BP914649
Clone id YMU001_000061_D03
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCCTAACAAGCCAATTAAAGAATCTTTCACATGAGGGTGTTGTTCTTGGTATTTCAAAGA
GTAAATTTACTCCTTTACCAAACTAAGATAGCTATACGAATGAAAAAATATGGTACCTCC
TTGTCCTCTCCCTTAGCTAACATCTTTAAGACTTGTTCAACAAGCTTCTAGATTTGTTGG
GGTCAATGATACCATAAACTTGACTAATCTCCTTCTATGTGTGCTTTGAAAGGAAGGAGA
GAGAGGCAGATTTGTCTGAGACTCCTATCTGCCTGCTCTGCCCACGTGTCTTCTTCTCCC
TTCGTCCACTTGACTGGCTCCCCGCTATCTCCATGAAGCCTTCCCCTTTTCCATTTGGTG
GCATCGGCTTAGATACCCATTAATAAACCACTTTCAAAATTGACCACACATACGGCATAC
TTGAATACCCATACTAATACAGATCAGTTATGGATGTTGTACTTGGCAAATATACTTGCT
CTTCTATTCAATGTTCGGGAAAGATGTGTGTTAGCTTAATATCGTGCCGTTTTATTGTGA
CAGTCCGTTATCCTCTCCCTTTTTGCTCCA
■■Homology search results ■■ -
sp_hit_id Q75DS1
Definition sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii
Align length 41
Score (bit) 31.6
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914649|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D03.
(570 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 ... 32 2.9

>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2
OS=Ashbya gossypii GN=RPA2 PE=3 SV=1
Length = 1198

Score = 31.6 bits (70), Expect = 2.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2

Query: 398 FESGLLMGI*ADATKWKRGRLHGDSGEPVKWTKGEEDTWAE 276
F S + +G+ ++ K G LHG + + WT EEDT A+
Sbjct: 949 FPSRMTIGMFVESLAGKAGALHGIAQDATPWTFSEEDTPAD 989


tr_hit_id A9RTW1
Definition tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 23
Score (bit) 30.0
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914649|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D03.
(570 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella paten... 30 1.5
tr|A5AKZ4|A5AKZ4_VITVI Putative uncharacterized protein OS=Vitis... 34 5.0
tr|A7QM75|A7QM75_VITVI Chromosome chr5 scaffold_124, whole genom... 34 6.5
tr|A5BZG5|A5BZG5_VITVI Putative uncharacterized protein OS=Vitis... 34 6.5
tr|A5DDC5|A5DDC5_PICGU Putative uncharacterized protein OS=Pichi... 34 6.5
tr|A0LHN4|A0LHN4_SYNFM Putative uncharacterized protein OS=Syntr... 33 8.5

>tr|A9RTW1|A9RTW1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_205535 PE=4 SV=1
Length = 2180

Score = 30.0 bits (66), Expect(2) = 1.5
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -2

Query: 182 PQQI*KLVEQVLKMLAKGEDKEV 114
PQQ KL E VL LA+G+D+EV
Sbjct: 295 PQQSQKLAEDVLSKLAEGDDREV 317



Score = 24.3 bits (51), Expect(2) = 1.5
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -3

Query: 352 GKGEGFMEIAGSQSSGRREKKTRGQSRQIGVSDKSASLSFLSKHT*KEISQVYGIIDPNK 173
G G+ + + Q G+ ++ + V D A +L + +ISQ +G IDP +
Sbjct: 244 GDGQDTRQASAMQMGGQDDEDMEEADEGLNVQDIDAY--WLQR----KISQAHGDIDPQQ 297

Query: 172 SRSL 161
S+ L
Sbjct: 298 SQKL 301


>tr|A5AKZ4|A5AKZ4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_025517 PE=4 SV=1
Length = 646

Score = 34.3 bits (77), Expect = 5.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1

Query: 400 LTTHTAYLNTHTNTDQLWMLYLANILALLFNV 495
+TTH +YL + LW LY+ +ILALL N+
Sbjct: 366 ITTHFSYLPLGVVDEVLWQLYIDDILALLLNI 397


>tr|A7QM75|A7QM75_VITVI Chromosome chr5 scaffold_124, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001949001
PE=4 SV=1
Length = 2072

Score = 33.9 bits (76), Expect = 6.5
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -2

Query: 182 PQQI*KLVEQVLKMLAKGEDKEV 114
PQQ KL E+VLK+LA+G+D+EV
Sbjct: 210 PQQCQKLAEEVLKILAEGDDREV 232


>tr|A5BZG5|A5BZG5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_042645 PE=4 SV=1
Length = 2144

Score = 33.9 bits (76), Expect = 6.5
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -2

Query: 182 PQQI*KLVEQVLKMLAKGEDKEV 114
PQQ KL E+VLK+LA+G+D+EV
Sbjct: 299 PQQCQKLAEEVLKILAEGDDREV 321


>tr|A5DDC5|A5DDC5_PICGU Putative uncharacterized protein OS=Pichia
guilliermondii GN=PGUG_01276 PE=4 SV=2
Length = 716

Score = 33.9 bits (76), Expect = 6.5
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -3

Query: 355 NGKGEGFMEIAGSQSSGRREKKTRGQSRQIGVSDKSASL 239
NG GEGF ++ SQ + KK RG+ +++ D+S+ +
Sbjct: 3 NGSGEGFENVSESQLETPKPKKKRGRPKKVSPKDESSPI 41


>tr|A0LHN4|A0LHN4_SYNFM Putative uncharacterized protein
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=Sfum_1244 PE=4 SV=1
Length = 373

Score = 33.5 bits (75), Expect = 8.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -2

Query: 389 GLLMGI*ADATKWKRGRLHGDSGEP---VKWTKGEEDTWAEQADRSLRQICLS 240
GLL+ + D KW+RG + EP ++W E W E A RSL+ I ++
Sbjct: 31 GLLLRL-RDLHKWERGMAPWEEPEPHVLLEWVDARETYWEEIASRSLQPISMA 82