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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914653
Clone id YMU001_000061_D07
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACCACACAACATATCATGGACCTAAAATGGCATCAAAATATATGACCAGTTTAACTACAT
AAAACTTCACTGTACATTATAATACAAATCAAAATTTGAACCACTACGTGATCTTCAACT
GTTCAAGACCTTCTGAAGCTACGTTGTACCACCACCACTACAACTACGGCAACTGCAAGC
ATCATGCACGATGTTACTGTCTTGTCCTTTGCACTTGCACCTTCCTTTGTGAGAAGCGTC
TTTTCCATGGATCCAAACATGCTGTCCAAAATTGAGTAAAGTTTGATTCGCACATAGCTG
TAGTACACTTTGGTCCTTGTCACCAACCCATAAAATTTGGAAGCAAGCCTCGTACCCAAT
TCCTTAATCTCAAGAAAATCATCATCATCTTCATCTTCATCTTCATCATCATCAAAACCA
AAAGAATCTTGTGAATCGTGTGAATTTTCTTGAGTTAGCTCCAAAACCTTTTCATTGCTC
AGCATTGCATTCCACACGGCAGGATCACGGGCGAGTGACTTAACAACTTCCTGAACTTTT
GGGTTCGACTGCAAGAGTTGAAATGCTTGGATAACCGGGTTGTTCTCGACTGTAA
■■Homology search results ■■ -
sp_hit_id Q557I1
Definition sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum
Align length 62
Score (bit) 34.3
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914653|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D07.
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamm...    34   0.48 
sp|Q8IQG1|MOB2_DROME Mps one binder kinase activator-like 2 OS=D...    32   1.8  
sp|Q18473|YE15_CAEEL UPF0392 protein C35A5.5 OS=Caenorhabditis e...    30   7.0  

>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma
           OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1
          Length = 684

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +3

Query: 3   HTTYHGPKMASKYMTSLTT*NFTVHYNTNQNLNHYVIFNCSRPSEATLYHHHYNYGNCKH 182
           H+  H P  AS   TS +  N   H+N N N N+    N +  +    +HHH+NY + + 
Sbjct: 6   HSLLHFPSSASTGSTSNSHNN---HHNNNNNNNYNNNNNNNINNINNNHHHHHNYKSIQQ 62

Query: 183 HA 188
           H+
Sbjct: 63  HS 64


>sp|Q8IQG1|MOB2_DROME Mps one binder kinase activator-like 2
           OS=Drosophila melanogaster GN=Mob2 PE=1 SV=3
          Length = 566

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 63  NFTVHYNTNQNLNHYVIFNCSRPSEATLYHHHYNYGNCKHH 185
           NF+ + N N NLNH+             +HHH+++G+  HH
Sbjct: 497 NFSNNNNNNHNLNHH-------------HHHHHHHGHHGHH 524


>sp|Q18473|YE15_CAEEL UPF0392 protein C35A5.5 OS=Caenorhabditis
           elegans GN=C35A5.5 PE=2 SV=3
          Length = 525

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = +3

Query: 21  PKMASKYMTSLTT*NFTVHYNTNQNLNHYVIFNCSRPSEATLYHHHYNYGNCKHHARCYC 200
           PK   +  +S    N     NT  NLN   IF+  R  E TL+   +  G  K  A    
Sbjct: 129 PKFLEESYSSCPYINMVAMVNTLPNLNKLEIFDGERKMEKTLFQIPFQMG--KTTAPASV 186

Query: 201 LVLCTCTFLCEK-RLFHGSKHAVQN*VKFDSHI 296
           ++  +  F+ E+ +LF    H  +   KF  H+
Sbjct: 187 IICISPQFVAEQWQLFVAHAHVAR---KFGGHL 216
tr_hit_id A9NLD3
Definition tr|A9NLD3|A9NLD3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 143
Score (bit) 58.2
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914653|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D07.
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NLD3|A9NLD3_PICSI Putative uncharacterized protein OS=Picea...    58   4e-07
tr|A9SDT8|A9SDT8_PHYPA Predicted protein OS=Physcomitrella paten...    54   7e-06
tr|A9NUF8|A9NUF8_PICSI Putative uncharacterized protein OS=Picea...    52   2e-05
tr|Q10QD3|Q10QD3_ORYSJ Os03g0201000 protein OS=Oryza sativa subs...    52   3e-05
tr|Q10QD2|Q10QD2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    52   3e-05
tr|A2XDL8|A2XDL8_ORYSI Putative uncharacterized protein OS=Oryza...    52   3e-05
tr|A9NN66|A9NN66_PICSI Putative uncharacterized protein OS=Picea...    51   4e-05
tr|B6TL94|B6TL94_MAIZE Putative uncharacterized protein OS=Zea m...    51   6e-05
tr|B4G1S6|B4G1S6_MAIZE Putative uncharacterized protein OS=Zea m...    51   6e-05
tr|B4FQT4|B4FQT4_MAIZE Putative uncharacterized protein OS=Zea m...    51   6e-05
tr|Q949B5|Q949B5_ORYSA Putative uncharacterized protein W1110ERI...    50   1e-04
tr|Q6Z9U8|Q6Z9U8_ORYSJ Os08g0179900 protein OS=Oryza sativa subs...    50   1e-04
tr|Q6H689|Q6H689_ORYSJ Os02g0657700 protein OS=Oryza sativa subs...    50   1e-04
tr|B8AG50|B8AG50_ORYSI Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A6N1C1|A6N1C1_ORYSI Putative uncharacterized protein (Fragmen...    50   1e-04
tr|A3BQ82|A3BQ82_ORYSJ Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A3A9S8|A3A9S8_ORYSJ Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A2YRU6|A2YRU6_ORYSI Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A9TGP9|A9TGP9_PHYPA Predicted protein OS=Physcomitrella paten...    48   4e-04
tr|B6TN01|B6TN01_MAIZE Putative uncharacterized protein OS=Zea m...    48   5e-04
tr|B4FKH1|B4FKH1_MAIZE Putative uncharacterized protein OS=Zea m...    48   5e-04
tr|A9PAV8|A9PAV8_POPTR Putative uncharacterized protein OS=Popul...    48   5e-04
tr|Q9FKH0|Q9FKH0_ARATH Genomic DNA, chromosome 5, TAC clone:K11J...    46   0.002
tr|A7Q5B8|A7Q5B8_VITVI Chromosome undetermined scaffold_52, whol...    46   0.002
tr|A9SL01|A9SL01_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A7P136|A7P136_VITVI Chromosome chr19 scaffold_4, whole genome...    45   0.003
tr|A7PKF7|A7PKF7_VITVI Chromosome chr15 scaffold_19, whole genom...    45   0.004
tr|Q9FIV0|Q9FIV0_ARATH Arabidopsis thaliana genomic DNA, chromos...    42   0.020
tr|Q7XU30|Q7XU30_ORYSJ Os04g0550700 protein OS=Oryza sativa subs...    42   0.026
tr|Q01JC7|Q01JC7_ORYSA OSIGBa0122F23.3 protein OS=Oryza sativa G...    42   0.026

>tr|A9NLD3|A9NLD3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 314

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
 Frame = -3

Query: 584 NNPVIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLELTQENSHDSQDSFGFXXX 405
           +N V +AF LLQSNP VQE+V SLA D  VW A+L NEKV E  Q    D          
Sbjct: 178 HNNVCEAFNLLQSNPAVQEMVISLASDKTVWEALLKNEKVTEFRQSLQKDES-------- 229

Query: 404 XXXXXXXXDFLEIKELG-------TRLASKFYGLVTRTKVYYSYVRIKLYSILDSMFGSM 246
                      +++EL            + F  ++  TK+       K+  +L+  FG +
Sbjct: 230 -----------KLRELSKDSDKPPPHQENHFMWVIENTKMKVMECIEKITELLNQYFGFV 278

Query: 245 EKTLLTKEGASAKDKTVTSCMML 177
           ++  L K+     ++ + + +ML
Sbjct: 279 DEKDLFKKDEDPLERILRASLML 301


>tr|A9SDT8|A9SDT8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164415 PE=4 SV=1
          Length = 352

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 26/57 (45%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
 Frame = -3

Query: 584 NNPVIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLELTQE-NSHDSQDSFG 417
           ++ +++AF   Q NP+VQ +V SLA D A+W+A+LSNEK+ E  +  ++ +S+DSFG
Sbjct: 204 SSAMLEAFYQFQHNPQVQGMVVSLATDKAIWDAVLSNEKIKEFRRNFSAPNSEDSFG 260


>tr|A9NUF8|A9NUF8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 454

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = -3

Query: 590 VENNPVIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLELTQ 450
           V +N V +AF LL++NP VQ +V S+A D AVW+A+L NEKV E  Q
Sbjct: 317 VGHNNVREAFHLLKNNPAVQRMVMSVASDKAVWDALLKNEKVHEFRQ 363


>tr|Q10QD3|Q10QD3_ORYSJ Os03g0201000 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0201000 PE=2 SV=1
          Length = 327

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = -3

Query: 575 VIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLE 459
           V+QAF +LQ +P+ QEVV SLA D  VWNA++ NEKV++
Sbjct: 182 VVQAFTMLQDSPEAQEVVASLASDQNVWNAVMRNEKVMK 220


>tr|Q10QD2|Q10QD2_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g10390 PE=4 SV=1
          Length = 288

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = -3

Query: 575 VIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLE 459
           V+QAF +LQ +P+ QEVV SLA D  VWNA++ NEKV++
Sbjct: 143 VVQAFTMLQDSPEAQEVVASLASDQNVWNAVMRNEKVMK 181


>tr|A2XDL8|A2XDL8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10413 PE=4 SV=1
          Length = 327

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = -3

Query: 575 VIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLE 459
           V+QAF +LQ +P+ QEVV SLA D  VWNA++ NEKV++
Sbjct: 182 VVQAFTMLQDSPEAQEVVASLASDQNVWNAVMRNEKVMK 220


>tr|A9NN66|A9NN66_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 319

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 38/138 (27%), Positives = 64/138 (46%)
 Frame = -3

Query: 590 VENNPVIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLELTQENSHDSQDSFGFX 411
           +  N V+ AF+LLQ N  V+E+V SL  D A+W+A+L NEKV+E  +E  H  +      
Sbjct: 188 LRQNDVLDAFRLLQRNHTVREMVISLVSDKAIWDALLKNEKVVEF-RELLHKGETK---- 242

Query: 410 XXXXXXXXXXDFLEIKELGTRLASKFYGLVTRTKVYYSYVRIKLYSILDSMFGSMEKTLL 231
                        EI E      +      ++        ++K+  I++ + G  +K + 
Sbjct: 243 -----------LQEITEGSDENPADNPNWFSQA---VQSAKLKVVEIINHILGFADKKIF 288

Query: 230 TKEGASAKDKTVTSCMML 177
           ++      D+TV S +ML
Sbjct: 289 SENDGEILDRTVKSSLML 306


>tr|B6TL94|B6TL94_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 303

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 24/55 (43%), Positives = 40/55 (72%)
 Frame = -3

Query: 587 ENNPVIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLELTQENSHDSQDS 423
           E+  V+ AF+LLQ +P VQ++V SL+ D AVWNA+++NE V +  + + HD +++
Sbjct: 166 EHRNVVDAFRLLQKDPTVQKMVMSLSCDKAVWNAVMNNEAVQDF-RRSLHDGKEN 219


>tr|B4G1S6|B4G1S6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 260

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 24/55 (43%), Positives = 40/55 (72%)
 Frame = -3

Query: 587 ENNPVIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLELTQENSHDSQDS 423
           E+  V+ AF+LLQ +P VQ++V SL+ D AVWNA+++NE V +  + + HD +++
Sbjct: 123 EHRNVVDAFRLLQKDPTVQKMVMSLSCDKAVWNAVMNNEAVQDF-RRSLHDGKEN 176


>tr|B4FQT4|B4FQT4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 303

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 24/55 (43%), Positives = 40/55 (72%)
 Frame = -3

Query: 587 ENNPVIQAFQLLQSNPKVQEVVKSLARDPAVWNAMLSNEKVLELTQENSHDSQDS 423
           E+  V+ AF+LLQ +P VQ++V SL+ D AVWNA+++NE V +  + + HD +++
Sbjct: 166 EHRNVVDAFRLLQKDPTVQKMVMSLSCDKAVWNAVMNNEAVQDF-RRSLHDGKEN 219