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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914656
Clone id YMU001_000061_D10
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGGTATGAGCTTAGCATTGGTGTGGCAATTTGATCCCTATCTGCCTTTTCACGCTTTGG
CAAAATCTTCCTGTAAGCGTGCCCACATTGGCCTCCATATGCGCTTTGAGCACCTTCTCA
ATGCGCTGACCAAGAACAGCTTCCACTCGCTTCACTTCTTTTGCCACGGGAACTGCTAGA
ATGACCTGTATTTGCTTCTGAAAATCCCTTTGCATTGCTACAAGCTGATTAACAGATTCT
TGCATTGCATTGATTTGACCTACTAACTTCGATGGTAGGACACTACTGCTACCCTTGCTC
GTATCTTGCTCGGAAGTGCTTGCCACACTTGACACGAGGGCTGATAAAGGTGGTGTTAAG
TTCATGAGGACGTTAGTATCAGTCTTGTATTAGTTCTTCTTCCTCCGTGTCTGGGAGGCC
ACAGAAAATGCTGAAGCATTCTCAACTTTGGCAGAAACTTCTTGAAGTTGCTCACTATTA
TCATCCCCTTTTGCCACTTGTGAGGGTTCTCTT
■■Homology search results ■■ -
sp_hit_id Q17ZN0
Definition sp|Q17ZN0|PDXA_HELAH 4-hydroxythreonine-4-phosphate dehydrogenase OS=Helicobacter acinonychis (strain Sheeba)
Align length 68
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914656|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D10.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q17ZN0|PDXA_HELAH 4-hydroxythreonine-4-phosphate dehydrogenas...    32   1.7  
sp|Q9ZJ28|PDXA_HELPJ 4-hydroxythreonine-4-phosphate dehydrogenas...    30   6.5  
sp|Q1CR24|PDXA_HELPH 4-hydroxythreonine-4-phosphate dehydrogenas...    30   6.5  

>sp|Q17ZN0|PDXA_HELAH 4-hydroxythreonine-4-phosphate dehydrogenase
           OS=Helicobacter acinonychis (strain Sheeba) GN=pdxA PE=3
           SV=1
          Length = 310

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -2

Query: 287 SSVLPSKLVGQINAMQESVNQLVAMQRDFQKQI-QVILAVPVAKEVKRVEAVLGQRIEKV 111
           S  +P + V Q+  ++  V  L+A Q+  Q QI QV    P A E    E + G+  EK+
Sbjct: 154 SDHVPLRAVSQLIQVKALVQFLLAFQKSTQAQIIQVCGFNPHAGE----EGLFGEEDEKI 209

Query: 110 LKAHMEAN 87
           LKA  E+N
Sbjct: 210 LKAIQESN 217


>sp|Q9ZJ28|PDXA_HELPJ 4-hydroxythreonine-4-phosphate dehydrogenase
           OS=Helicobacter pylori J99 GN=pdxA PE=3 SV=1
          Length = 307

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -2

Query: 287 SSVLPSKLVGQINAMQESVNQLVAMQRDFQ-KQIQVILAVPVAKEVKRVEAVLGQRIEKV 111
           S  +P   V Q+  ++  V  L+A Q+  Q K +QV    P A E    E + G+  EK+
Sbjct: 154 SDHVPLSAVSQLIQVKALVKFLLAFQKSTQAKIVQVCGFNPHAGE----EGLFGEEDEKI 209

Query: 110 LKAHMEAN 87
           LKA  E+N
Sbjct: 210 LKAIQESN 217


>sp|Q1CR24|PDXA_HELPH 4-hydroxythreonine-4-phosphate dehydrogenase
           OS=Helicobacter pylori (strain HPAG1) GN=pdxA PE=3 SV=1
          Length = 307

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -2

Query: 287 SSVLPSKLVGQINAMQESVNQLVAMQRDFQ-KQIQVILAVPVAKEVKRVEAVLGQRIEKV 111
           S  +P   V Q+  ++E V  L+A Q+  Q K +QV    P A E    E + G+  EK+
Sbjct: 154 SDHVPLGAVSQLIQVKELVKFLLAFQKSTQAKIVQVCGFNPHAGE----EGLFGEEDEKI 209

Query: 110 LKAHMEAN 87
           LKA  ++N
Sbjct: 210 LKAIQKSN 217
tr_hit_id A9TXU9
Definition tr|A9TXU9|A9TXU9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 156
Score (bit) 81.6
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914656|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D10.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TXU9|A9TXU9_PHYPA Predicted protein OS=Physcomitrella paten...    82   2e-14
tr|A9SVK7|A9SVK7_PHYPA Predicted protein OS=Physcomitrella paten...    79   2e-13
tr|A9TBL8|A9TBL8_PHYPA Predicted protein OS=Physcomitrella paten...    77   6e-13
tr|A9SN85|A9SN85_PHYPA Predicted protein OS=Physcomitrella paten...    74   3e-12
tr|A7Q9H0|A7Q9H0_VITVI Chromosome chr19 scaffold_66, whole genom...    69   2e-10
tr|A7R1A0|A7R1A0_VITVI Chromosome undetermined scaffold_342, who...    65   1e-09
tr|A5BIR1|A5BIR1_VITVI Putative uncharacterized protein OS=Vitis...    65   1e-09
tr|Q5ZA32|Q5ZA32_ORYSJ WD-40 repeat protein-like OS=Oryza sativa...    57   2e-07
tr|A3BAZ7|A3BAZ7_ORYSJ Putative uncharacterized protein OS=Oryza...    57   2e-07
tr|Q0DCQ6|Q0DCQ6_ORYSJ Os06g0300800 protein (Fragment) OS=Oryza ...    57   2e-07
tr|B8B0W2|B8B0W2_ORYSI Putative uncharacterized protein OS=Oryza...    57   2e-07
tr|Q5ZA31|Q5ZA31_ORYSJ WD-40 repeat protein-like OS=Oryza sativa...    57   2e-07
tr|A9RBG7|A9RBG7_PHYPA Predicted protein OS=Physcomitrella paten...    57   5e-07
tr|A5BRP8|A5BRP8_VITVI Putative uncharacterized protein OS=Vitis...    57   5e-07
tr|Q6Z5M6|Q6Z5M6_ORYSJ Os02g0722800 protein OS=Oryza sativa subs...    57   7e-07
tr|B8AHN8|B8AHN8_ORYSI Putative uncharacterized protein OS=Oryza...    57   7e-07
tr|A3AAV3|A3AAV3_ORYSJ Putative uncharacterized protein OS=Oryza...    57   7e-07
tr|Q9LTT9|Q9LTT9_ARATH Genomic DNA, chromosome 3, P1 clone: MDC1...    56   9e-07
tr|A2Q5F8|A2Q5F8_MEDTR Peptidase S26A, signal peptidase I; WD40-...    56   9e-07
tr|Q9LTT8|Q9LTT8_ARATH Gb|AAF53066.1 OS=Arabidopsis thaliana GN=...    53   1e-05
tr|Q8L7N9|Q8L7N9_ARATH Putative uncharacterized protein At3g1330...    53   1e-05
tr|Q0WLC5|Q0WLC5_ARATH Putative uncharacterized protein At3g1330...    53   1e-05
tr|Q7SDD4|Q7SDD4_NEUCR Predicted protein OS=Neurospora crassa GN...    35   1.6  
tr|Q6MVS1|Q6MVS1_NEUCR Related to putative cytoplasmic structura...    35   1.6  
tr|A7RTS3|A7RTS3_NEMVE Predicted protein OS=Nematostella vectens...    34   3.7  
tr|B8FTR2|B8FTR2_DESHD Putative uncharacterized protein OS=Desul...    33   8.1  
tr|A8JF64|A8JF64_CHLRE Mitotic checkpoint protein MAD1 OS=Chlamy...    33   8.1  
tr|Q245R7|Q245R7_TETTH TPR Domain containing protein OS=Tetrahym...    33   8.1  

>tr|A9TXU9|A9TXU9_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_98720 PE=4 SV=1
          Length = 1572

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 54/156 (34%), Positives = 89/156 (57%), Gaps = 8/156 (5%)
 Frame = -2

Query: 482  DNSEQLQEVSAKVENASAFSVASQTR-----RKKN*YKTD---TNVLMNLTXXXXXXXXX 327
            D+ ++L+ V AK   A   + A+Q R      +K+  KT+    ++ +N           
Sbjct: 1045 DSQDELKNVIAKEREAGVSATAAQHRIASVKGRKSKNKTNLASASLPLNSDPSKPFSAPA 1104

Query: 326  XXSTSEQDTSKGSSSVLPSKLVGQINAMQESVNQLVAMQRDFQKQIQVILAVPVAKEVKR 147
                 E + S+ +S+ L   L+ Q+  MQES+NQL+A+Q+D+QKQI V++AVPVA+E KR
Sbjct: 1105 TLPEGEAE-SRLNSAFLDLGLITQVATMQESLNQLIAIQKDWQKQIPVMVAVPVAEEAKR 1163

Query: 146  VEAVLGQRIEKVLKAHMEANVGTLTGRFCQSVKRQI 39
            +E   GQ +EKV+KA+M+A +  +     +  K+ I
Sbjct: 1164 LEGAFGQHMEKVVKANMDAMLARVNDENVRREKQDI 1199


>tr|A9SVK7|A9SVK7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_216156 PE=4 SV=1
          Length = 1161

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 37/58 (63%), Positives = 51/58 (87%)
 Frame = -2

Query: 263 VGQINAMQESVNQLVAMQRDFQKQIQVILAVPVAKEVKRVEAVLGQRIEKVLKAHMEA 90
           + Q+ +MQES+NQLV+MQ++ QKQ+ V++AVPVAKE KR+E  LGQR+EKVLKAH++A
Sbjct: 739 LAQVASMQESLNQLVSMQKEIQKQMTVMVAVPVAKEGKRMEGALGQRMEKVLKAHVDA 796


>tr|A9TBL8|A9TBL8_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_193513 PE=4 SV=1
          Length = 1214

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
 Frame = -2

Query: 497  VAKGDDNSEQLQEVSAKVE-NASAFSVASQTRRKKN*-------YKTDTNVLMNLTXXXX 342
            +A+ + ++  + EVS K+  +ASA S +++T             +    + LMNL     
Sbjct: 686  MAQSNSSTTSVDEVSGKIHRDASADSSSAKTSNLSQPGILHQVLHLITPSELMNLPEGET 745

Query: 341  XXXXXXXSTSEQDTSKGSSSV---LPSKLVGQINAMQESVNQLVAMQRDFQKQIQVILAV 171
                   S+S    +   S+    +    + Q+ +MQES+NQLV MQ++ QKQ+ V++AV
Sbjct: 746  SHIVDPVSSSTPMAAAAPSTAPAAIDPAFLAQVASMQESLNQLVTMQKEIQKQMAVMVAV 805

Query: 170  PVAKEVKRVEAVLGQRIEKVLKAHMEA 90
            PV KE KR+E  LGQR+EK+LKAH++A
Sbjct: 806  PVQKEGKRMEVALGQRMEKMLKAHVDA 832


>tr|A9SN85|A9SN85_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_186691 PE=4 SV=1
          Length = 1261

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
 Frame = -2

Query: 509  EPSQVAKGD-DNSEQLQEVSAKVENASAFSVASQT----RRKKN*YKTDTNVLMNLTXXX 345
            E  +++  D D+  +L+ V AK   A   +  +Q     R+ KN     T+ L  +T   
Sbjct: 747  EEKKLSSADSDSKHELKSVLAKQCEAGVGNFTAQQPVKGRKSKNKNNVATSGLPLITNPS 806

Query: 344  XXXXXXXXSTSEQDTSKGSSSVLPSKLVGQINAMQESVNQLVAMQRDFQKQIQVILAVPV 165
                     +  +  S  +S++L   L  QI  MQES+NQ++A+QR+ QKQ+ V+ A  +
Sbjct: 807  QSSAAPATLSECETVSSLNSALLDPGLTTQIATMQESLNQVLAIQRELQKQMTVLTAASL 866

Query: 164  AKEVKRVEAVLGQRIEKVLKAHMEA 90
            +KE KR+E   GQR+EK++KA+++A
Sbjct: 867  SKETKRLEGAFGQRMEKIVKANVDA 891


>tr|A7Q9H0|A7Q9H0_VITVI Chromosome chr19 scaffold_66, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00033471001
            PE=4 SV=1
          Length = 1308

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 47/132 (35%), Positives = 71/132 (53%)
 Frame = -2

Query: 485  DDNSEQLQEVSAKVENASAFSVASQTRRKKN*YKTDTNVLMNLTXXXXXXXXXXXSTSEQ 306
            D+  + +++VS KV    A S    T + KN   + +    N T             S  
Sbjct: 822  DEVIDAIKDVSGKV----ADSAMPTTHKGKNSQVSPSPTAFNSTD------------SSN 865

Query: 305  DTSKGSSSVLPSKLVGQINAMQESVNQLVAMQRDFQKQIQVILAVPVAKEVKRVEAVLGQ 126
            +     SS      V  I AMQE++NQL++MQ++ QKQI V++AVPV KE +R+EA LG+
Sbjct: 866  EPGANLSSPSVEAAVPHILAMQETLNQLLSMQKEMQKQISVLVAVPVTKEGRRLEATLGR 925

Query: 125  RIEKVLKAHMEA 90
             +EK +KA+ +A
Sbjct: 926  SMEKSVKANADA 937


>tr|A7R1A0|A7R1A0_VITVI Chromosome undetermined scaffold_342, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00011841001 PE=4 SV=1
          Length = 1169

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 34/75 (45%), Positives = 51/75 (68%)
 Frame = -2

Query: 314 SEQDTSKGSSSVLPSKLVGQINAMQESVNQLVAMQRDFQKQIQVILAVPVAKEVKRVEAV 135
           S  + S  SS         Q+ +MQE ++QLV MQ++ QKQ+ V++AVPV KE +R+EA 
Sbjct: 719 SSNEPSSSSSPPSMDAAFSQLFSMQEMLDQLVNMQKEMQKQMNVMVAVPVTKESRRLEAS 778

Query: 134 LGQRIEKVLKAHMEA 90
           LG+ +EKV+KA+ +A
Sbjct: 779 LGRSMEKVVKANSDA 793


>tr|A5BIR1|A5BIR1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_038739 PE=4 SV=1
          Length = 1404

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 34/75 (45%), Positives = 51/75 (68%)
 Frame = -2

Query: 314  SEQDTSKGSSSVLPSKLVGQINAMQESVNQLVAMQRDFQKQIQVILAVPVAKEVKRVEAV 135
            S  + S  SS         Q+ +MQE ++QLV MQ++ QKQ+ V++AVPV KE +R+EA 
Sbjct: 928  SSNEPSSSSSPPSMDAAFSQLFSMQEMLDQLVNMQKEMQKQMNVMVAVPVTKESRRLEAS 987

Query: 134  LGQRIEKVLKAHMEA 90
            LG+ +EKV+KA+ +A
Sbjct: 988  LGRSMEKVVKANSDA 1002


>tr|Q5ZA32|Q5ZA32_ORYSJ WD-40 repeat protein-like OS=Oryza sativa
            subsp. japonica GN=P0501G08.38-1 PE=4 SV=1
          Length = 1334

 Score = 57.0 bits (136), Expect(2) = 2e-07
 Identities = 25/52 (48%), Positives = 40/52 (76%)
 Frame = -2

Query: 245  MQESVNQLVAMQRDFQKQIQVILAVPVAKEVKRVEAVLGQRIEKVLKAHMEA 90
            +QE++ QL+AM  D QKQ+  I++ P+AKE KR+E  LG+ +EK +KA+++A
Sbjct: 914  IQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKANIDA 965



 Score = 21.2 bits (43), Expect(2) = 2e-07
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 88  MWARLQEDFAK 56
           MWAR QE+ AK
Sbjct: 966 MWARFQEENAK 976


>tr|A3BAZ7|A3BAZ7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_020219 PE=4 SV=1
          Length = 1256

 Score = 57.0 bits (136), Expect(2) = 2e-07
 Identities = 25/52 (48%), Positives = 40/52 (76%)
 Frame = -2

Query: 245 MQESVNQLVAMQRDFQKQIQVILAVPVAKEVKRVEAVLGQRIEKVLKAHMEA 90
           +QE++ QL+AM  D QKQ+  I++ P+AKE KR+E  LG+ +EK +KA+++A
Sbjct: 836 IQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKANIDA 887



 Score = 21.2 bits (43), Expect(2) = 2e-07
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 88  MWARLQEDFAK 56
           MWAR QE+ AK
Sbjct: 888 MWARFQEENAK 898


>tr|Q0DCQ6|Q0DCQ6_ORYSJ Os06g0300800 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os06g0300800 PE=4 SV=1
          Length = 1206

 Score = 57.0 bits (136), Expect(2) = 2e-07
 Identities = 25/52 (48%), Positives = 40/52 (76%)
 Frame = -2

Query: 245 MQESVNQLVAMQRDFQKQIQVILAVPVAKEVKRVEAVLGQRIEKVLKAHMEA 90
           +QE++ QL+AM  D QKQ+  I++ P+AKE KR+E  LG+ +EK +KA+++A
Sbjct: 786 IQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKANIDA 837



 Score = 21.2 bits (43), Expect(2) = 2e-07
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 88  MWARLQEDFAK 56
           MWAR QE+ AK
Sbjct: 838 MWARFQEENAK 848