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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914657
Clone id YMU001_000061_D11
Library
Length 531
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTACAAGAAATATATCTTACTTTCTTTTCAAAAAATAATCAGCTTACAACCAAGTAAA
TCCAATCATTAATTTGAGCCAAGAGAAAATAACTGCAAATATCATATCATGCTGTCATGC
ATCTTTTCAAAGAAGGAAAAAACAACACCTAGGTCCCAAACTCATATCCAATGAATCATT
TATCGTCTGTCGATTACACATGTCCTCCCTCCCTTGGACCCTTTTATTAGACTAAGATTG
TGACTACGATCGGCGACCAACTCGCACTTCTGTTGCTTTACATCCTTCGAAGTGTCAGTA
ATAAACAGCTGAAGTCACTACCGAGCTGTGAAAACTGGAGACGCATCTGCTGTTGGTTGG
GTCCTTCTTGTATATTTCAAGAGCAGAGCATCTACCGACTTTCCAGGAGCTCTCAAATCA
CCGATGTAAGGCTCGAGGTCTTGCCACTCCCACTTTGATCTTTCTCTGAAAAGTGCTGCA
AATCTTTCAGCTGGATTCGAAGGTAGGGTGGACAGAGAAAAAGGGCGCAGC
■■Homology search results ■■ -
sp_hit_id P25559
Definition sp|P25559|DCC1_YEAST Sister chromatid cohesion protein DCC1 OS=Saccharomyces cerevisiae
Align length 50
Score (bit) 56.6
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914657|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D11.
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25559|DCC1_YEAST Sister chromatid cohesion protein DCC1 OS=S...    57   7e-08
sp|Q14AI0|DCC1_MOUSE Sister chromatid cohesion protein DCC1 OS=M...    45   2e-04
sp|Q66I84|DCC1_DANRE Sister chromatid cohesion protein DCC1 OS=D...    45   2e-04
sp|Q6GL75|DCC1_XENTR Sister chromatid cohesion protein DCC1 OS=X...    45   2e-04
sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1 OS=X...    45   2e-04
sp|Q9BVC3|DCC1_HUMAN Sister chromatid cohesion protein DCC1 OS=H...    45   3e-04
sp|Q55BA5|DCC1_DICDI Probable sister chromatid cohesion protein ...    44   6e-04
sp|Q47334|KPSF5_ECOLX Polysialic acid capsule expression protein...    32   1.9  
sp|P42502|KPSF1_ECOLX Polysialic acid capsule expression protein...    30   5.5  
sp|Q9Y337|KLK5_HUMAN Kallikrein-5 OS=Homo sapiens GN=KLK5 PE=1 SV=1    30   7.2  

>sp|P25559|DCC1_YEAST Sister chromatid cohesion protein DCC1
           OS=Saccharomyces cerevisiae GN=DCC1 PE=1 SV=2
          Length = 380

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 23/50 (46%), Positives = 36/50 (72%)
 Frame = -2

Query: 512 STLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRR 363
           STLP +P ERF  LFR +S+W+ +D++P I +L + G  +D+ ++KY RR
Sbjct: 319 STLPMDPKERFKVLFRLQSQWDLEDIKPLIEELNSRGMKIDSFIMKYARR 368


>sp|Q14AI0|DCC1_MOUSE Sister chromatid cohesion protein DCC1 OS=Mus
           musculus GN=DSCC1 PE=2 SV=1
          Length = 399

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = -2

Query: 506 LPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           LP    +RF +LF  R KW  +D+ PYI DL    +++ ALL KY+R
Sbjct: 336 LPEGTQDRFNSLFSLREKWTEEDITPYIQDLCGEKQTIGALLTKYSR 382


>sp|Q66I84|DCC1_DANRE Sister chromatid cohesion protein DCC1
           OS=Danio rerio GN=dscc1 PE=2 SV=1
          Length = 391

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 28/47 (59%)
 Frame = -2

Query: 506 LPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           LP +  ERF +LF  R KW   D+EPYI DL    ++  ALL K+ R
Sbjct: 327 LPEDTLERFNSLFSLREKWTQDDIEPYIQDLCGEKQTTGALLTKHAR 373


>sp|Q6GL75|DCC1_XENTR Sister chromatid cohesion protein DCC1
           OS=Xenopus tropicalis GN=dscc1 PE=2 SV=1
          Length = 391

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 27/47 (57%)
 Frame = -2

Query: 506 LPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           LP +  ERF  LF  R KW   D+ PYI DL    +++ ALL KY R
Sbjct: 328 LPEDTQERFNTLFGMREKWAEADIAPYIKDLCGEKQTIGALLTKYAR 374


>sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1
           OS=Xenopus laevis GN=dscc1 PE=2 SV=1
          Length = 390

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 27/47 (57%)
 Frame = -2

Query: 506 LPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           LP +  ERF  LF  R KW   D+ PYI DL    +++ ALL KY R
Sbjct: 327 LPEDTQERFNTLFGMREKWTEADIAPYIQDLCGEKQTIGALLTKYAR 373


>sp|Q9BVC3|DCC1_HUMAN Sister chromatid cohesion protein DCC1 OS=Homo
           sapiens GN=DSCC1 PE=1 SV=2
          Length = 393

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = -2

Query: 506 LPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYT 369
           LP +  ERF +LF  R KW  +D+ PYI DL    +++ ALL KY+
Sbjct: 330 LPEDNQERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYS 375


>sp|Q55BA5|DCC1_DICDI Probable sister chromatid cohesion protein
           DCC1 OS=Dictyostelium discoideum GN=DDB_G0271400 PE=3
           SV=1
          Length = 376

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -2

Query: 512 STLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           S LP+ P  RF  LF+  ++W   D+EP+I     PG S++  +L Y+R
Sbjct: 313 SILPTIPKARFKELFQISTRWSIDDIEPFIKSTIPPGNSLEQFILTYSR 361


>sp|Q47334|KPSF5_ECOLX Polysialic acid capsule expression protein
           kpsF OS=Escherichia coli GN=kpsF PE=3 SV=1
          Length = 327

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 141 NNT*VPNSYPMNHLSSVDYTCPPSLGPFY*TKIVTTIGDQLALLLLYILRSVSNKQLKSL 320
           N+T   N+  +  L   + TCP +L P   T +   IGD LA+ +++  + + N   +  
Sbjct: 141 NSTLAKNADAVLELHMANETCPNNLAPTTSTTLTMAIGDALAIAMIHQRKFMPNDFARYH 200

Query: 321 PSCENWRRI 347
           P     RR+
Sbjct: 201 PGGSLGRRL 209


>sp|P42502|KPSF1_ECOLX Polysialic acid capsule expression protein
           kpsF OS=Escherichia coli GN=kpsF PE=3 SV=1
          Length = 317

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 141 NNT*VPNSYPMNHLSSVDYTCPPSLGPFY*TKIVTTIGDQLALLLLYILRSVSNKQLKSL 320
           N+T   N+  +  L   + TCP +L P   T +   IGD LA+ ++   + + N   +  
Sbjct: 141 NSTLAKNADAVLELHMANETCPNNLAPTTSTTLTMAIGDALAIAMIRQRKFMPNDFARYH 200

Query: 321 PSCENWRRI 347
           P     RR+
Sbjct: 201 PGGSLGRRL 209


>sp|Q9Y337|KLK5_HUMAN Kallikrein-5 OS=Homo sapiens GN=KLK5 PE=1 SV=1
          Length = 293

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 407 PGKSVDALLLKYTRRTQPTADASPV 333
           PG S D +L+K  RR +PT D  P+
Sbjct: 148 PGHSNDLMLIKLNRRIRPTKDVRPI 172
tr_hit_id A7R1Y6
Definition tr|A7R1Y6|A7R1Y6_VITVI Chromosome undetermined scaffold_385, whole genome shotgun sequence OS=Vitis vinifera
Align length 70
Score (bit) 104.0
E-value 3.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914657|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D11.
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R1Y6|A7R1Y6_VITVI Chromosome undetermined scaffold_385, who...   104   3e-21
tr|Q0DL74|Q0DL74_ORYSJ Os05g0119600 protein OS=Oryza sativa subs...   103   5e-21
tr|A3AZD7|A3AZD7_ORYSJ Putative uncharacterized protein OS=Oryza...   103   5e-21
tr|A2XZS1|A2XZS1_ORYSI Putative uncharacterized protein OS=Oryza...   103   5e-21
tr|B6U5N0|B6U5N0_MAIZE Protein binding protein OS=Zea mays PE=2 ...   103   7e-21
tr|B4FIU9|B4FIU9_MAIZE Putative uncharacterized protein OS=Zea m...   103   7e-21
tr|A9RR21|A9RR21_PHYPA Predicted protein OS=Physcomitrella paten...    92   2e-17
tr|A8JA86|A8JA86_CHLRE Predicted protein (Fragment) OS=Chlamydom...    74   6e-12
tr|B3S1B1|B3S1B1_TRIAD Putative uncharacterized protein OS=Trich...    57   8e-07
tr|B3LU61|B3LU61_YEAS1 Sister chromatid cohesion protein DCC1 OS...    57   8e-07
tr|A6ZTH0|A6ZTH0_YEAS7 Conserved protein OS=Saccharomyces cerevi...    57   8e-07
tr|O80498|O80498_ARATH Putative RING zinc finger protein OS=Arab...    56   1e-06
tr|Q9LIW8|Q9LIW8_ORYSA Similar to a putative RING zinc finger pr...    56   1e-06
tr|A7T817|A7T817_NEMVE Predicted protein (Fragment) OS=Nematoste...    55   2e-06
tr|A7SXS6|A7SXS6_NEMVE Predicted protein OS=Nematostella vectens...    55   2e-06
tr|A4SAU7|A4SAU7_OSTLU Predicted protein OS=Ostreococcus lucimar...    53   8e-06
tr|B2G4C2|B2G4C2_ZYGRO Sister chromatid cohesion protein DCC1 OS...    52   2e-05
tr|Q4P4P9|Q4P4P9_USTMA Putative uncharacterized protein OS=Ustil...    51   3e-05
tr|A8NXP4|A8NXP4_COPC7 Putative uncharacterized protein OS=Copri...    50   9e-05
tr|Q6CS08|Q6CS08_KLULA KLLA0D04972p OS=Kluyveromyces lactis GN=K...    49   1e-04
tr|A7TGM8|A7TGM8_VANPO Putative uncharacterized protein OS=Vande...    49   1e-04
tr|B0CYH1|B0CYH1_LACBS Predicted protein OS=Laccaria bicolor (st...    47   5e-04
tr|B5XCA8|B5XCA8_SALSA Sister chromatid cohesion protein DCC1 OS...    47   6e-04
tr|Q00WB1|Q00WB1_OSTTA Zinc finger (ISS) OS=Ostreococcus tauri G...    47   8e-04
tr|B6JWM8|B6JWM8_SCHJP Sister chromatid cohesion protein dcc1 OS...    47   8e-04
tr|Q4V3Z5|Q4V3Z5_DROME CG11788 OS=Drosophila melanogaster GN=CG1...    46   0.001
tr|B4QEL7|B4QEL7_DROSI GD11503 OS=Drosophila simulans GN=Dsim\GD...    46   0.001
tr|B4HQ53|B4HQ53_DROSE GM22004 OS=Drosophila sechellia GN=Dsec\G...    46   0.001
tr|Q75EV1|Q75EV1_ASHGO AAL015Wp OS=Ashbya gossypii GN=AAL015W PE...    46   0.001
tr|Q8C1P7|Q8C1P7_MOUSE Putative uncharacterized protein OS=Mus m...    45   0.002

>tr|A7R1Y6|A7R1Y6_VITVI Chromosome undetermined scaffold_385, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012489001 PE=4 SV=1
          Length = 378

 Score =  104 bits (259), Expect = 3e-21
 Identities = 47/70 (67%), Positives = 58/70 (82%)
 Frame = -2

Query: 530 LRPFSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPT 351
           +R FS+S+LPSNPA RF+ LF+ER KWEW+DL+PYI DL  PG S + LLLKYTR+TQP 
Sbjct: 309 VRAFSVSSLPSNPAARFSMLFQERPKWEWKDLQPYIRDLTVPGLSSEGLLLKYTRKTQPN 368

Query: 350 ADASPVFTAR 321
           +DA PVF+AR
Sbjct: 369 SDAEPVFSAR 378


>tr|Q0DL74|Q0DL74_ORYSJ Os05g0119600 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0119600 PE=4 SV=1
          Length = 168

 Score =  103 bits (257), Expect = 5e-21
 Identities = 46/67 (68%), Positives = 57/67 (85%)
 Frame = -2

Query: 521 FSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADA 342
           FS++ LP  PA+RFAALF+ER KWEW+DL+PYI DLR PG S + LL+KYTR+TQP+ADA
Sbjct: 102 FSVADLPLAPADRFAALFQERPKWEWKDLQPYIRDLRVPGVSSEGLLIKYTRKTQPSADA 161

Query: 341 SPVFTAR 321
            P+FTAR
Sbjct: 162 EPIFTAR 168


>tr|A3AZD7|A3AZD7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016159 PE=4 SV=1
          Length = 403

 Score =  103 bits (257), Expect = 5e-21
 Identities = 46/67 (68%), Positives = 57/67 (85%)
 Frame = -2

Query: 521 FSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADA 342
           FS++ LP  PA+RFAALF+ER KWEW+DL+PYI DLR PG S + LL+KYTR+TQP+ADA
Sbjct: 337 FSVADLPLAPADRFAALFQERPKWEWKDLQPYIRDLRVPGVSSEGLLIKYTRKTQPSADA 396

Query: 341 SPVFTAR 321
            P+FTAR
Sbjct: 397 EPIFTAR 403


>tr|A2XZS1|A2XZS1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18234 PE=4 SV=1
          Length = 403

 Score =  103 bits (257), Expect = 5e-21
 Identities = 46/67 (68%), Positives = 57/67 (85%)
 Frame = -2

Query: 521 FSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADA 342
           FS++ LP  PA+RFAALF+ER KWEW+DL+PYI DLR PG S + LL+KYTR+TQP+ADA
Sbjct: 337 FSVADLPLAPADRFAALFQERPKWEWKDLQPYIRDLRVPGVSSEGLLIKYTRKTQPSADA 396

Query: 341 SPVFTAR 321
            P+FTAR
Sbjct: 397 EPIFTAR 403


>tr|B6U5N0|B6U5N0_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 404

 Score =  103 bits (256), Expect = 7e-21
 Identities = 46/67 (68%), Positives = 56/67 (83%)
 Frame = -2

Query: 521 FSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADA 342
           FS++ LP  PAERFAALFRER+KWEW+DL+PYI DL  PG S + LL+KYTRR+QP A+A
Sbjct: 338 FSVTDLPLAPAERFAALFRERAKWEWKDLQPYIRDLHVPGASSEGLLIKYTRRSQPNAEA 397

Query: 341 SPVFTAR 321
            P+FTAR
Sbjct: 398 EPIFTAR 404


>tr|B4FIU9|B4FIU9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 403

 Score =  103 bits (256), Expect = 7e-21
 Identities = 46/67 (68%), Positives = 56/67 (83%)
 Frame = -2

Query: 521 FSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADA 342
           FS++ LP  PAERFAALFRER+KWEW+DL+PYI DL  PG S + LL+KYTRR+QP A+A
Sbjct: 337 FSVTDLPLAPAERFAALFRERAKWEWKDLQPYIRDLHVPGASSEGLLIKYTRRSQPNAEA 396

Query: 341 SPVFTAR 321
            P+FTAR
Sbjct: 397 EPIFTAR 403


>tr|A9RR21|A9RR21_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_69441 PE=4 SV=1
          Length = 401

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 40/70 (57%), Positives = 57/70 (81%)
 Frame = -2

Query: 530 LRPFSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPT 351
           LR FS+S+LP+ PAERF+ALF+E  KWEW DLEPY+  ++APG+SV+A+LL+YTR+TQ +
Sbjct: 332 LRLFSVSSLPTKPAERFSALFKENPKWEWDDLEPYLRGMQAPGQSVEAMLLRYTRKTQIS 391

Query: 350 ADASPVFTAR 321
            +   ++T R
Sbjct: 392 PNVPAMYTPR 401


>tr|A8JA86|A8JA86_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_151985 PE=4
           SV=1
          Length = 475

 Score = 73.6 bits (179), Expect = 6e-12
 Identities = 30/67 (44%), Positives = 48/67 (71%)
 Frame = -2

Query: 521 FSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADA 342
           F  + LPS+PA+RF+ LF  R +W W DLEP++  ++ PG+S +A+LL++ R +Q T D+
Sbjct: 409 FPSAALPSDPAQRFSLLFTVRPRWAWTDLEPFLAGIKVPGQSAEAVLLRFARASQATPDS 468

Query: 341 SPVFTAR 321
             ++TAR
Sbjct: 469 PLMYTAR 475


>tr|B3S1B1|B3S1B1_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_58261 PE=4 SV=1
          Length = 373

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 25/52 (48%), Positives = 36/52 (69%)
 Frame = -2

Query: 521 FSLSTLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           F +S LP +P  RF  LF+ R+KW  +++EPYI DL    +S++ +LLKYTR
Sbjct: 289 FQVSELPPDPYVRFNKLFKVRTKWSLEEIEPYIKDLATGSQSLNTILLKYTR 340


>tr|B3LU61|B3LU61_YEAS1 Sister chromatid cohesion protein DCC1
           OS=Saccharomyces cerevisiae (strain RM11-1a)
           GN=SCRG_05388 PE=4 SV=1
          Length = 380

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 23/50 (46%), Positives = 36/50 (72%)
 Frame = -2

Query: 512 STLPSNPAERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRR 363
           STLP +P ERF  LFR +S+W+ +D++P I +L + G  +D+ ++KY RR
Sbjct: 319 STLPMDPKERFKVLFRLQSQWDLEDIKPLIEELNSRGMKIDSFIMKYARR 368