BP914668
Clone id YMU001_000061_E10
Library
Length 248
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGTATCCATAGAAGTCCAAAAAGTAGTCTACTGCTCCCTCAAGATTCAGCATCATCCTTT
AAGCCATCTCCATCCACGCTTCCATAGGCTCCACAAAGTGTAAGCTTGCCCTGATGTAGC
AGTGTATGATGTACAGAATAAGATGGTATGAAGTGAAGAAACAGTGTCTTCTTATCTGAC
ACGACTTCGCTTTCTGTCGCTTAGCTTGCTGTACTTCTTTGATCGGTACTCTGCACTCCT
GCTCCTCT
■■Homology search results ■■ -
sp_hit_id Q9M9X9
Definition sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana
Align length 29
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914668|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_E10.
(248 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protei... 30 4.9

>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial OS=Arabidopsis thaliana
GN=At1g06710 PE=2 SV=1
Length = 987

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2

Query: 23 VVYCSLKIQHHPLSHLHPRFHRLHKV*AC 109
VV C L HHPL H LH+V C
Sbjct: 5 VVRCLLSRSHHPLIHFSTNLSLLHRVFTC 33


tr_hit_id Q1Z4J2
Definition tr|Q1Z4J2|Q1Z4J2_PHOPR Putative uncharacterized protein OS=Photobacterium profundum 3TCK
Align length 61
Score (bit) 33.1
E-value 7.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914668|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_E10.
(248 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1Z4J2|Q1Z4J2_PHOPR Putative uncharacterized protein OS=Photo... 33 7.2

>tr|Q1Z4J2|Q1Z4J2_PHOPR Putative uncharacterized protein
OS=Photobacterium profundum 3TCK GN=P3TCK_24481 PE=4
SV=1
Length = 776

Score = 33.1 bits (74), Expect = 7.2
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3

Query: 234 AEY-RSKKYSKLSDRKRSRVR*EDTVSSLHTILFCTSYTATSGQAYTLWSLWKRGWRWLK 58
AEY +S KY LSD + DT + TI T++ A+ G LW + G+R++
Sbjct: 502 AEYDKSNKYLTLSDDDDDEPKLSDTELFIPTIYNTTTFDASVGWQPMLWQEMRLGYRYII 561

Query: 57 G 55
G
Sbjct: 562 G 562