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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914672
Clone id YMU001_000061_F02
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTCGCCAAATCTTTCTATACTCAAGATCATTTCTCCATTCATGAGCCAAAATTCTAGAT
CCAAATGTTCAAGTCTCGAACTTACATACAAATACAAATTATTTTTCAAAATCATCACTC
TCTACATTTTTTACAATCCAATGAGCATCTGTAATGCTCAAAATAAAGTACTCTAACCTG
CTGCAATTTCTGTGAATGGCTCCTAGCAAGTCTTCTTCAAAGCTTAATTAGTTTAAGTAA
AACCAGTAACGCATTACCAAAAAAGTGTGTATGCATACTCACCAACAAGTAAGGCGCAGA
AATATGAGTGCTACGGCGACAAAGAGTACGAAGAGAAATGCCATGCTTCCAAGTACTGGT
CACCAACAAATTAATTCTTAAAAAAAACAGTACAAAGAATCAGTACTAGCTGAACATGAA
ACTTGAGATAGAGATACCTATACAAAAGCACCCACTCACGCCCTCGAACAAGTGTTGGGA
GATGCGTACACAGTGAGCTTCGCAGGA
■■Homology search results ■■ -
sp_hit_id Q6DFV7
Definition sp|Q6DFV7|NCOA7_MOUSE Nuclear receptor coactivator 7 OS=Mus musculus
Align length 39
Score (bit) 33.1
E-value 0.78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914672|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_F02.
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6DFV7|NCOA7_MOUSE Nuclear receptor coactivator 7 OS=Mus musc...    33   0.78 
sp|Q8NI08|NCOA7_HUMAN Nuclear receptor coactivator 7 OS=Homo sap...    33   0.78 
sp|Q5ZMS4|NCOA7_CHICK Nuclear receptor coactivator 7 OS=Gallus g...    33   0.78 
sp|Q43175|CISY_SOLTU Citrate synthase, mitochondrial OS=Solanum ...    30   4.9  

>sp|Q6DFV7|NCOA7_MOUSE Nuclear receptor coactivator 7 OS=Mus
           musculus GN=Ncoa7 PE=2 SV=2
          Length = 943

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 366 LVTSTWKHGISLRTLCRRSTHISAPYLLV--SMHTHFFG 256
           L  ST +HG SL+TL R+S  + +P LLV   M    FG
Sbjct: 807 LAYSTLEHGTSLKTLYRKSASLDSPVLLVIKDMDNQIFG 845


>sp|Q8NI08|NCOA7_HUMAN Nuclear receptor coactivator 7 OS=Homo
           sapiens GN=NCOA7 PE=1 SV=2
          Length = 942

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 366 LVTSTWKHGISLRTLCRRSTHISAPYLLV--SMHTHFFG 256
           L  ST +HG SL+TL R+S  + +P LLV   M    FG
Sbjct: 806 LAYSTLEHGTSLKTLYRKSASLDSPVLLVIKDMDNQIFG 844


>sp|Q5ZMS4|NCOA7_CHICK Nuclear receptor coactivator 7 OS=Gallus
           gallus GN=NCOA7 PE=2 SV=1
          Length = 907

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 366 LVTSTWKHGISLRTLCRRSTHISAPYLLV--SMHTHFFG 256
           L  ST +HG SL+TL R+S  + +P LLV   M    FG
Sbjct: 771 LAYSTLEHGTSLKTLYRKSASLDSPVLLVIKDMDNQIFG 809


>sp|Q43175|CISY_SOLTU Citrate synthase, mitochondrial OS=Solanum
           tuberosum PE=2 SV=1
          Length = 471

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 243 PVTHYQKSVYAYSPTSKAQKYECYGDKEYEEKCHASKYWSPT 368
           P+T +   V A    S+ QK        YE+  H SKYW PT
Sbjct: 172 PMTQFATGVMALQVQSEFQK-------AYEKGIHKSKYWEPT 206
tr_hit_id B8LR06
Definition tr|B8LR06|B8LR06_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 30
Score (bit) 40.0
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914672|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_F02.
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LR06|B8LR06_PICSI Putative uncharacterized protein OS=Picea...    40   2e-06
tr|A5BPK0|A5BPK0_VITVI Putative uncharacterized protein OS=Vitis...    38   9e-04
tr|B4FLE7|B4FLE7_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.001
tr|A3B9S0|A3B9S0_ORYSJ Putative uncharacterized protein OS=Oryza...    35   0.002
tr|Q8GUN9|Q8GUN9_ARATH Putative uncharacterized protein At4g3987...    33   0.002
tr|Q8VZ09|Q8VZ09_ARATH Putative uncharacterized protein At4g3987...    33   0.002
tr|Q67VZ2|Q67VZ2_ORYSJ Os06g0221100 protein OS=Oryza sativa subs...    35   0.002
tr|A2YAT2|A2YAT2_ORYSI Putative uncharacterized protein OS=Oryza...    35   0.002
tr|B4FDE2|B4FDE2_MAIZE Putative uncharacterized protein OS=Zea m...    35   0.002
tr|A7NXI0|A7NXI0_VITVI Chromosome chr5 scaffold_2, whole genome ...    38   0.002
tr|Q9AT60|Q9AT60_ARATH Putative uncharacterized protein T20G20.6...    38   0.003
tr|Q9SL08|Q9SL08_ARATH Expressed protein OS=Arabidopsis thaliana...    38   0.003
tr|Q94A07|Q94A07_ARATH Putative uncharacterized protein At2g0559...    38   0.003
tr|A9SSW1|A9SSW1_PHYPA Predicted protein (Fragment) OS=Physcomit...    32   0.004
tr|A9SPL0|A9SPL0_PHYPA Predicted protein (Fragment) OS=Physcomit...    32   0.005
tr|B8B5N7|B8B5N7_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.012
tr|A7R5H9|A7R5H9_VITVI Chromosome undetermined scaffold_975, who...    32   0.041
tr|A9S596|A9S596_PHYPA Predicted protein (Fragment) OS=Physcomit...    31   0.056
tr|B6TJ62|B6TJ62_MAIZE TLD family protein OS=Zea mays PE=2 SV=1        32   0.088
tr|B8AIS8|B8AIS8_ORYSI Putative uncharacterized protein OS=Oryza...    33   0.24 
tr|Q6Z6A4|Q6Z6A4_ORYSJ Os02g0754000 protein OS=Oryza sativa subs...    33   0.25 
tr|B7ERM9|B7ERM9_ORYSJ cDNA clone:J033035I12, full insert sequen...    33   0.25 
tr|A6N086|A6N086_ORYSI Putative uncharacterized protein (Fragmen...    33   0.25 
tr|Q6Z157|Q6Z157_ORYSJ Os07g0438700 protein OS=Oryza sativa subs...    38   0.32 
tr|Q4RFE3|Q4RFE3_TETNG Chromosome 8 SCAF15119, whole genome shot...    33   1.5  
tr|Q9SMR6|Q9SMR6_ARATH Putative uncharacterized protein T5J17.40...    35   1.6  
tr|Q7PGA6|Q7PGA6_ANOGA AGAP010470-PA (Fragment) OS=Anopheles gam...    35   2.7  
tr|Q8CG81|Q8CG81_MOUSE Ncoa7 protein (Fragment) OS=Mus musculus ...    33   8.0  
tr|A9Q6S9|A9Q6S9_MOUSE NCOA7B OS=Mus musculus GN=Ncoa7 PE=2 SV=1       33   8.0  
tr|Q5R8N5|Q5R8N5_PONAB Putative uncharacterized protein DKFZp469...    33   8.0  

>tr|B8LR06|B8LR06_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 332

 Score = 40.0 bits (92), Expect(2) = 2e-06
 Identities = 20/30 (66%), Positives = 22/30 (73%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRSTHISAPYLLV 280
           +L+ STWKHGISL TL RRST    P LLV
Sbjct: 167 VLLYSTWKHGISLHTLYRRSTLSPGPCLLV 196



 Score = 35.0 bits (79), Expect(2) = 2e-06
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -3

Query: 499 SSLCTHLPTLVRGREWVLLY 440
           S LC+ LPTL +GR+WVLLY
Sbjct: 151 SYLCSELPTLAQGRKWVLLY 170


>tr|A5BPK0|A5BPK0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037045 PE=4 SV=1
          Length = 317

 Score = 38.1 bits (87), Expect(2) = 9e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRSTHISAPYLLV 280
           +L+ ST KHGISLRTL R+S  +S P LL+
Sbjct: 168 VLLYSTLKHGISLRTLIRKSADLSGPCLLI 197



 Score = 28.1 bits (61), Expect(2) = 9e-04
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 493 LCTHLPTLVRGREWVLLYRYL 431
           L + LP +VRG +WVLLY  L
Sbjct: 154 LLSSLPNIVRGCQWVLLYSTL 174


>tr|B4FLE7|B4FLE7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 327

 Score = 43.9 bits (102), Expect(2) = 0.001
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRSTHISAPYLLV 280
           +L+ STWKHGISLRTL RRS +I  P LL+
Sbjct: 181 VLLYSTWKHGISLRTLLRRSENIQGPCLLI 210



 Score = 21.6 bits (44), Expect(2) = 0.001
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 481 LPTLVRGREWVLLY 440
           LP  ++G  WVLLY
Sbjct: 171 LPGTLKGCHWVLLY 184


>tr|A3B9S0|A3B9S0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019792 PE=4 SV=1
          Length = 537

 Score = 34.7 bits (78), Expect(2) = 0.002
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRSTHISAPYLLV 280
           +LV STW+HGISL TL RRS   +   LL+
Sbjct: 376 MLVYSTWRHGISLSTLYRRSMLCAGYSLLI 405



 Score = 30.4 bits (67), Expect(2) = 0.002
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 505 LRSSLCTHLPTLVRGREWVLLY 440
           +R+ L T LP LV+GR W+L+Y
Sbjct: 358 MRTVLYTSLPVLVQGRNWMLVY 379


>tr|Q8GUN9|Q8GUN9_ARATH Putative uncharacterized protein At4g39870
           OS=Arabidopsis thaliana GN=At4g39870 PE=2 SV=1
          Length = 394

 Score = 33.5 bits (75), Expect(2) = 0.002
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -3

Query: 502 RSSLCTHLPTLVRGREWVLLY 440
           R SL T LP LV+GR+W+LLY
Sbjct: 216 RRSLYTSLPALVQGRKWILLY 236



 Score = 31.6 bits (70), Expect(2) = 0.002
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRS 310
           +L+ STW+HGISL TL R+S
Sbjct: 233 ILLYSTWRHGISLSTLYRKS 252


>tr|Q8VZ09|Q8VZ09_ARATH Putative uncharacterized protein At4g39870
           (Fragment) OS=Arabidopsis thaliana GN=At4g39870 PE=2
           SV=2
          Length = 389

 Score = 33.5 bits (75), Expect(2) = 0.002
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -3

Query: 502 RSSLCTHLPTLVRGREWVLLY 440
           R SL T LP LV+GR+W+LLY
Sbjct: 211 RRSLYTSLPALVQGRKWILLY 231



 Score = 31.6 bits (70), Expect(2) = 0.002
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRS 310
           +L+ STW+HGISL TL R+S
Sbjct: 228 ILLYSTWRHGISLSTLYRKS 247


>tr|Q67VZ2|Q67VZ2_ORYSJ Os06g0221100 protein OS=Oryza sativa subsp.
           japonica GN=P0516A04.13 PE=2 SV=1
          Length = 368

 Score = 34.7 bits (78), Expect(2) = 0.002
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRSTHISAPYLLV 280
           +LV STW+HGISL TL RRS   +   LL+
Sbjct: 207 MLVYSTWRHGISLSTLYRRSMLCAGYSLLI 236



 Score = 30.4 bits (67), Expect(2) = 0.002
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 505 LRSSLCTHLPTLVRGREWVLLY 440
           +R+ L T LP LV+GR W+L+Y
Sbjct: 189 MRTVLYTSLPVLVQGRNWMLVY 210


>tr|A2YAT2|A2YAT2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22197 PE=4 SV=1
          Length = 368

 Score = 34.7 bits (78), Expect(2) = 0.002
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRSTHISAPYLLV 280
           +LV STW+HGISL TL RRS   +   LL+
Sbjct: 207 MLVYSTWRHGISLSTLYRRSMLCAGYSLLI 236



 Score = 30.4 bits (67), Expect(2) = 0.002
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 505 LRSSLCTHLPTLVRGREWVLLY 440
           +R+ L T LP LV+GR W+L+Y
Sbjct: 189 MRTVLYTSLPVLVQGRNWMLVY 210


>tr|B4FDE2|B4FDE2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 279

 Score = 34.7 bits (78), Expect(2) = 0.002
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRSTHISAPYLLV 280
           +LV STW+HGISL TL RRS   +   LL+
Sbjct: 202 MLVYSTWRHGISLSTLYRRSRLCAGYSLLI 231



 Score = 30.4 bits (67), Expect(2) = 0.002
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 505 LRSSLCTHLPTLVRGREWVLLY 440
           +R+ L T LP LV+GR W+L+Y
Sbjct: 184 MRAVLYTSLPVLVQGRNWMLVY 205


>tr|A7NXI0|A7NXI0_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020343001
           PE=4 SV=1
          Length = 220

 Score = 38.1 bits (87), Expect(2) = 0.002
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -1

Query: 369 LLVTSTWKHGISLRTLCRRSTHISAPYLLV 280
           +L+ ST KHGISLRTL R+S  +S P LL+
Sbjct: 74  VLLYSTLKHGISLRTLIRKSADLSGPCLLI 103



 Score = 26.9 bits (58), Expect(2) = 0.002
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 493 LCTHLPTLVRGREWVLLYRYL 431
           L + LP +V+G +WVLLY  L
Sbjct: 60  LLSSLPNIVKGCQWVLLYSTL 80