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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914679
Clone id YMU001_000061_F11
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCGGGTTGCACGACGCTTTCAACAACACGTCGGCATCCTCAACATCTTTGAGGTGCAGCG
ACGCTAGCAACACAAGAAGGTGAGAACACCTTTGCTCCTCCTCGGTGCCATTATGACTCC
GCGTGGCGCTACAGCAATTGCATCAACTGCAGCAACCCATGCCTATGCACCTCCGAACAC
CATTACAGCTCCTGGCAGCGCCACGCGGCTCTGCATCAACCTAAGTGTCTACTGCCTAAC
CCTGGTTTCCGCGTCCTAGTCCATACTGCCTAATCCTTGCTACCGGGCGAAATCAATACG
ACTGCATGCAATTACGTCTGCTGTGAAACCCATGCTACCGGGCGGAAGTGGCATTGTTGC
ATAAATTAGTGACACAAGGGCTGGGTCACACTGCACAAGCGCCGAGTCACAATAGTGCCA
CCTCACAATACCCAACTTAAACTTCCCACCAACCCTACCTGTAACCTCAATTTGTAACCA
CAACTATGCTACTCTACAACAACAACTGCAACGACTCGGTGTAAAACAACCCCGACCTCG
TGCCTTTCTCATCAACCATTAAACAAGACATT
■■Homology search results ■■ -
sp_hit_id O75800
Definition sp|O75800|ZMY10_HUMAN Zinc finger MYND domain-containing protein 10 OS=Homo sapiens
Align length 51
Score (bit) 33.1
E-value 0.96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914679|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_F11.
         (559 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O75800|ZMY10_HUMAN Zinc finger MYND domain-containing protein...    33   0.96 
sp|Q99ML0|ZMY10_MOUSE Zinc finger MYND domain-containing protein...    32   2.8  
sp|O43915|VEGFD_HUMAN Vascular endothelial growth factor D OS=Ho...    32   2.8  
sp|P97946|VEGFD_MOUSE Vascular endothelial growth factor D OS=Mu...    31   4.7  
sp|O35251|VEGFD_RAT Vascular endothelial growth factor D OS=Ratt...    30   8.1  

>sp|O75800|ZMY10_HUMAN Zinc finger MYND domain-containing protein 10
           OS=Homo sapiens GN=ZMYND10 PE=1 SV=2
          Length = 440

 Score = 33.1 bits (74), Expect = 0.96
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +1

Query: 100 PRCHYDSAWRYSNCINCSNPCLCTSEHHYSSWQRHAALHQPKCLLPNPGFR 252
           PRC Y SA     C  C N   C  E     W++H       C+L   G R
Sbjct: 392 PRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHG----KTCVLAAQGDR 438


>sp|Q99ML0|ZMY10_MOUSE Zinc finger MYND domain-containing protein 10
           OS=Mus musculus GN=Zmynd10 PE=2 SV=1
          Length = 440

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = +1

Query: 100 PRCHYDSAWRYSNCINCSNPCLCTSEHHYSSWQRHAALHQPKCLLPNPGFR 252
           PRC Y +A     C  C N   C  E     W++H       C+L   G R
Sbjct: 392 PRCGYCNAEASKRCSRCQNVWYCCRECQVKHWEKHG----KTCVLAAQGDR 438


>sp|O43915|VEGFD_HUMAN Vascular endothelial growth factor D OS=Homo
           sapiens GN=FIGF PE=1 SV=1
          Length = 354

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 19/82 (23%), Positives = 32/82 (39%)
 Frame = +1

Query: 4   GCTTLSTTRRHPQHL*GAATLATQEGENTFAPPRCHYDSAWRYSNCINCSNPCLCTSEHH 183
           GC  L T  RHP  +   +    +E   + +   C  D  W  + C      C+   E+ 
Sbjct: 188 GCKCLPTAPRHPYSIIRRSIQIPEEDRCSHSKKLCPIDMLWDSNKC-----KCVLQEENP 242

Query: 184 YSSWQRHAALHQPKCLLPNPGF 249
            +  + H+ L +P    P+  F
Sbjct: 243 LAGTEDHSHLQEPALCGPHMMF 264


>sp|P97946|VEGFD_MOUSE Vascular endothelial growth factor D OS=Mus
           musculus GN=Figf PE=2 SV=1
          Length = 358

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 20/82 (24%), Positives = 30/82 (36%)
 Frame = +1

Query: 4   GCTTLSTTRRHPQHL*GAATLATQEGENTFAPPRCHYDSAWRYSNCINCSNPCLCTSEHH 183
           GC  L T  RHP  +   +    +E E   +   C  D  W  + C      C+   E  
Sbjct: 193 GCKCLPTGPRHPYSIIRRSIQTPEEDECPHSKKLCPIDMLWDNTKC-----KCVLQDETP 247

Query: 184 YSSWQRHAALHQPKCLLPNPGF 249
               + H+ L +P    P+  F
Sbjct: 248 LPGTEDHSYLQEPTLCGPHMTF 269


>sp|O35251|VEGFD_RAT Vascular endothelial growth factor D OS=Rattus
           norvegicus GN=Figf PE=1 SV=1
          Length = 326

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 19/82 (23%), Positives = 31/82 (37%)
 Frame = +1

Query: 4   GCTTLSTTRRHPQHL*GAATLATQEGENTFAPPRCHYDSAWRYSNCINCSNPCLCTSEHH 183
           GC  L T  RHP  +   +    +E +   +   C  D  W  + C      C+   E+ 
Sbjct: 193 GCKCLPTGPRHPYSIIRRSIQIPEEDQCPHSKKLCPVDMLWDNTKC-----KCVLQDENP 247

Query: 184 YSSWQRHAALHQPKCLLPNPGF 249
               + H+ L +P    P+  F
Sbjct: 248 LPGTEDHSYLQEPALCGPHMMF 269
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914679|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_F11.
         (559 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******