BP914690
Clone id YMU001_000061_G11
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCAATCTGAAATAGCTTGAACCTTTGTTGGGTCCATGCGTACTTGATTATAGGAGACACA
GCTAGTGAATCTCTGTCAAGAAAAATTCACTCTTCTTAGCATTAACTTGAAGTTTATTTT
GTTGCAGTTCTTGAAACATAGTCTGTAGGTGTCGTTTGTGTGCTTCCTCTGTGTGAGAGA
AGACTAGGATGTCACCAAAGAAGATTCCTGTGAACTGTCGATGAAGACGTAAAATTCGGT
CCATCATTTGATTGAAAGTTGCTGGAGCGTTAGTAACGCCGAAAGGCATAACTAGAAACT
CGTACAATCCAAAAGTTGTTCGGAATGCAGTCTTATGTATGTCTTCAGGAGCAATACAAA
TCTGGTGGTAGCCGCTCTTAAGATCTATGCGGCTAAAAATTCGTGGCCCTTGTAGTTTGT
CTAAGATATCATCGATTCGGGGAATTGGAAATCTATTCTTAATTGTAATCTTGTTGAGAG
AACGATAGTCGATGCACATTCGAAAAGTGCCGTCTTTCTTTTGAACAAGCGAGACTAGTG
AACAGTGAGGAGAAGTGCTAGGTCGAACAAGAGCCTTATCGAGTACCTGC
■■Homology search results ■■ -
sp_hit_id Q7LHG5
Definition sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
Align length 169
Score (bit) 166.0
E-value 8.0e-41
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914690|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_G11.
(590 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 166 8e-41
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 166 8e-41
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 136 7e-32
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 136 9e-32
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 134 4e-31
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 132 1e-30
sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 130 5e-30
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 130 5e-30
sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic ... 129 1e-29
sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic ... 129 1e-29
sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic ... 129 1e-29
sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic ... 127 5e-29
sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic ... 125 2e-28
sp|P19199|POL_COYMV Putative polyprotein OS=Commelina yellow mot... 123 6e-28
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra... 123 8e-28
sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oeno... 114 4e-25
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 104 4e-22
sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus... 103 5e-22
sp|P15629|POL_SOCMV Enzymatic polyprotein OS=Soybean chlorotic m... 95 3e-19
sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf... 93 9e-19
sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched rin... 89 2e-17
sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform vi... 84 4e-16
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing... 84 7e-16
sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing... 84 7e-16
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha... 79 1e-14
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p... 62 3e-09
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus... 58 3e-08
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus ty... 52 2e-06
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus typ... 52 2e-06
sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogen... 52 2e-06

>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
Length = 1498

Score = 166 bits (420), Expect = 8e-41
Identities = 82/169 (48%), Positives = 114/169 (67%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
++LD + PS SP S V LV KKDGTFR+C+DYR+LNK TI + FP+PRID++L ++
Sbjct: 644 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 703

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
+IF+ +DL SGYHQI + P+D +KTAF T G YE+ VMPFG+ NAP+TF + M
Sbjct: 704 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 763

Query: 229 RLHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEF 83
R +F ++ DIL+FS + E H +HL T+ + L+ L V KK +F
Sbjct: 764 R-DLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 811


>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
Length = 1547

Score = 166 bits (420), Expect = 8e-41
Identities = 82/169 (48%), Positives = 114/169 (67%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
++LD + PS SP S V LV KKDGTFR+C+DYR+LNK TI + FP+PRID++L ++
Sbjct: 618 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 677

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
+IF+ +DL SGYHQI + P+D +KTAF T G YE+ VMPFG+ NAP+TF + M
Sbjct: 678 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 737

Query: 229 RLHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEF 83
R +F ++ DIL+FS + E H +HL T+ + L+ L V KK +F
Sbjct: 738 R-DLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 785


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
transposon opus OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1003

Score = 136 bits (343), Expect = 7e-32
Identities = 73/180 (40%), Positives = 111/180 (61%), Gaps = 6/180 (3%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKK-----DGTFRMCIDYRSLNKITIKNRFPIPRIDDI 425
++L ++RPS SP+ S + +V KK + +RM +D++ LN +TI + +PIP I+
Sbjct: 145 ELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINAT 204

Query: 424 LDKLQGPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQM 245
L L + F+ +DL SG+HQI + DI KTAF T G YEFL +PFG+ NAPA F +M
Sbjct: 205 LASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRM 264

Query: 244 MDRILRLH-RQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
+D ILR H + ++ DI+VFS + H ++L+ + L + LQVN +KS F T++
Sbjct: 265 IDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQV 324


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1058

Score = 136 bits (342), Expect = 9e-32
Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 6/178 (3%)
Frame = -2

Query: 586 VLDKALVRPSTSPHCSLVSLVQKKDGT-----FRMCIDYRSLNKITIKNRFPIPRIDDIL 422
+L++ ++R S SP+ S + +V KK FR+ IDYR LN+IT+ +R PIP +D+IL
Sbjct: 230 MLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEIL 289

Query: 421 DKLQGPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMM 242
KL F+ IDL G+HQI + PE + KTAF T G YE+L MPFG+ NAPATF + M
Sbjct: 290 GKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCM 349

Query: 241 DRILR-LHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTE 71
+ ILR L + ++ DI+VFS + + H + L +F++L + L++ K EF E
Sbjct: 350 NDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQE 407


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
transposon 297 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1059

Score = 134 bits (336), Expect = 4e-31
Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 6/179 (3%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGT-----FRMCIDYRSLNKITIKNRFPIPRIDDI 425
++L++ L+R S SP+ S +V KK +R+ IDYR LN+ITI +R+PIP +D+I
Sbjct: 228 EMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEI 287

Query: 424 LDKLQGPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQM 245
L KL + F+ IDL G+HQI + E I KTAF T G YE+L MPFG+ NAPATF +
Sbjct: 288 LGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRC 347

Query: 244 MDRILR-LHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTE 71
M+ ILR L + ++ DI++FS + H +Q +F +L L++ K EF E
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKE 406


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
Length = 1333

Score = 132 bits (333), Expect = 1e-30
Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
Q L ++R S + + V V KK+GT RM +DY+ LNK N +P+P I+ +L K+Q
Sbjct: 434 QGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQ 493

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
G IF+++DLKS YH I + D HK AFR G++E+LVMP+G++ APA F ++ IL
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTIL 553

Query: 229 -RLHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
+ DIL+ S +E H +H++ + Q+L+ L +N K EF +++
Sbjct: 554 GEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608


>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
Length = 1333

Score = 130 bits (327), Expect = 5e-30
Identities = 66/175 (37%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
Q L ++R S + + V V KK+GT RM +DY+ LNK N +P+P I+ +L K+Q
Sbjct: 434 QGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQ 493

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
G IF+++DLKS YH I + D HK AFR G++E+LVMP+G++ APA F ++ IL
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTIL 553

Query: 229 -RLHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
+ + +IL+ S +E H +H++ + Q+L+ L +N K EF +++
Sbjct: 554 GEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
Length = 1333

Score = 130 bits (327), Expect = 5e-30
Identities = 66/175 (37%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
Q L ++R S + + V V KK+GT RM +DY+ LNK N +P+P I+ +L K+Q
Sbjct: 434 QGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQ 493

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
G IF+++DLKS YH I + D HK AFR G++E+LVMP+G++ APA F ++ IL
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTIL 553

Query: 229 -RLHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
+ + +IL+ S +E H +H++ + Q+L+ L +N K EF +++
Sbjct: 554 GEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608


>sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain BBC) GN=ORF V PE=3 SV=1
Length = 679

Score = 129 bits (324), Expect = 1e-29
Identities = 70/192 (36%), Positives = 116/192 (60%), Gaps = 5/192 (2%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLV----QKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDIL 422
++LD +++PS SPH + LV +K+ G RM ++Y+++NK TI + + +P D++L
Sbjct: 268 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELL 327

Query: 421 DKLQGPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMM 242
++G +IFS D KSG+ Q+ + E TAF G YE+ V+PFG+ AP+ F + M
Sbjct: 328 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 387

Query: 241 DRILRLHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEIH* 62
D R+ R+F ++ DILVFS+ EE H H+ + Q+ Q+ + ++ KK++ F +I+
Sbjct: 388 DEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 447

Query: 61 LCL-L*SSTHGP 29
L L + TH P
Sbjct: 448 LGLEIDEGTHKP 459


>sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain CM-1841) GN=ORF V PE=3 SV=1
Length = 679

Score = 129 bits (324), Expect = 1e-29
Identities = 70/192 (36%), Positives = 116/192 (60%), Gaps = 5/192 (2%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLV----QKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDIL 422
++LD +++PS SPH + LV +K+ G RM ++Y+++NK TI + + +P D++L
Sbjct: 268 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELL 327

Query: 421 DKLQGPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMM 242
++G +IFS D KSG+ Q+ + E TAF G YE+ V+PFG+ AP+ F + M
Sbjct: 328 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 387

Query: 241 DRILRLHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEIH* 62
D R+ R+F ++ DILVFS+ EE H H+ + Q+ Q+ + ++ KK++ F +I+
Sbjct: 388 DEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 447

Query: 61 LCL-L*SSTHGP 29
L L + TH P
Sbjct: 448 LGLEIDEGTHKP 459


tr_hit_id Q2HW78
Definition tr|Q2HW78|Q2HW78_MEDTR RNA-directed DNA polymerase (Reverse transcriptase) OS=Medicago truncatula
Align length 174
Score (bit) 199.0
E-value 8.0e-51
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914690|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_G11.
(590 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2HW78|Q2HW78_MEDTR RNA-directed DNA polymerase (Reverse tran... 199 8e-51
tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus ... 198 1e-50
tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse tran... 199 7e-50
tr|A5BBP7|A5BBP7_VITVI Putative uncharacterized protein OS=Vitis... 197 4e-49
tr|Q5JPW2|Q5JPW2_ORYSA OSJNBa0085C10.29 protein OS=Oryza sativa ... 193 1e-48
tr|Q84KB0|Q84KB0_CUCME Pol protein OS=Cucumis melo PE=4 SV=1 196 1e-48
tr|A5C4G3|A5C4G3_VITVI Putative uncharacterized protein OS=Vitis... 196 1e-48
tr|A5C4G2|A5C4G2_VITVI Putative uncharacterized protein (Fragmen... 196 1e-48
tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gy... 191 2e-48
tr|Q8RU68|Q8RU68_ORYSA Putative 22 kDa kafirin cluster; Ty3-Gyps... 195 2e-48
tr|Q7G6A5|Q7G6A5_ORYSJ Putative 22 kDa kafirin cluster; Ty3-Gyps... 195 2e-48
tr|Q8W1D1|Q8W1D1_MAIZE Gag-pol OS=Zea mays PE=4 SV=1 194 3e-48
tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris ... 188 4e-48
tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa s... 190 4e-48
tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 190 5e-48
tr|Q6L3M7|Q6L3M7_SOLDE Gag-pol protein, putative OS=Solanum demi... 193 7e-48
tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 189 8e-48
tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa G... 184 1e-47
tr|Q6L3S3|Q6L3S3_SOLDE Putative gag-pol polyprotein, identical O... 192 1e-47
tr|Q6UUH7|Q6UUH7_ORYSJ Putative polyprotein OS=Oryza sativa subs... 192 2e-47
tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gy... 188 2e-47
tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s... 188 2e-47
tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G... 188 2e-47
tr|Q2QSS9|Q2QSS9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 186 2e-47
tr|A5BWN8|A5BWN8_VITVI Putative uncharacterized protein OS=Vitis... 191 2e-47
tr|Q7XRV6|Q7XRV6_ORYSJ OSJNBb0049I21.5 protein OS=Oryza sativa s... 186 2e-47
tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subs... 187 2e-47
tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gy... 188 2e-47
tr|Q7XXI2|Q7XXI2_ORYSJ OSJNBa0059H15.7 protein OS=Oryza sativa s... 187 2e-47
tr|Q33AC0|Q33AC0_ORYSJ Retrotransposon protein, putative, Ty3-gy... 189 3e-47

>tr|Q2HW78|Q2HW78_MEDTR RNA-directed DNA polymerase (Reverse
transcriptase) OS=Medicago truncatula
GN=MtrDRAFT_AC147774g16v1 PE=4 SV=1
Length = 579

Score = 199 bits (507), Expect(2) = 8e-51
Identities = 96/174 (55%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Frame = -2

Query: 586 VLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQG 407
+L+K VRPS SP + V LV+KKDG+ R+CIDYR LNK+TIKNR+P+PRIDD++D+L G
Sbjct: 222 LLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVG 281

Query: 406 PRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRILR 227
R+FS+IDL+SGYHQI + ED+ KTAFRT +G YE+ VMPFGVTNAP F + M+RI
Sbjct: 282 ARVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFH 341

Query: 226 LH-RQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
+F +F DIL++S TEE H HL+ + Q L++ KL K EF+L E+
Sbjct: 342 AFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEV 395



Score = 24.3 bits (51), Expect(2) = 8e-51
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3

Query: 57 VSYNQVRMDPTKVQAISDW 1
+S + + +DP+KV+A+S W
Sbjct: 402 ISGDGIVVDPSKVEAVSQW 420


>tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus
PE=4 SV=1
Length = 871

Score = 198 bits (503), Expect(2) = 1e-50
Identities = 91/174 (52%), Positives = 130/174 (74%), Gaps = 1/174 (0%)
Frame = -2

Query: 586 VLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQG 407
+LDK +RPS SP + V V+KKDG+ R+C+DYR LNK+TIKN++P+PRIDD+ D+LQG
Sbjct: 40 LLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCVDYRELNKVTIKNKYPLPRIDDLFDQLQG 99

Query: 406 PRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRILR 227
++S+IDL+SGYHQ+ I PED+ KTAFRT +G YEF VMPFG+TNAP F +M+R+ +
Sbjct: 100 SCVYSKIDLQSGYHQLKIKPEDVSKTAFRTRYGHYEFAVMPFGLTNAPTAFMDLMNRVFK 159

Query: 226 LH-RQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
+ +F +F DILV+S ++ H+ HL+ + Q L++ +L V KK EF+L E+
Sbjct: 160 PYLDRFVVVFIDDILVYSRSDADHEEHLRIVLQVLREKELYVKLKKCEFWLREV 213



Score = 25.0 bits (53), Expect(2) = 1e-50
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3

Query: 57 VSYNQVRMDPTKVQAISDW 1
+S + + +DP K++AI DW
Sbjct: 220 ISGSGIAVDPKKIEAIKDW 238


>tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse
transcriptase); Zinc finger, CCHC-type; Peptidase
aspartic, active site; Retrotransposon gag protein
OS=Medicago truncatula GN=MtrDRAFT_AC147774g4v1 PE=4 SV=1
Length = 912

Score = 199 bits (507), Expect = 7e-50
Identities = 96/174 (55%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Frame = -2

Query: 586 VLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQG 407
+L+K VRPS SP + V LV+KKDG+ R+CIDYR LNK+TIKNR+P+PRIDD++D+L G
Sbjct: 537 LLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVG 596

Query: 406 PRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRILR 227
R+FS+IDL+SGYHQI + ED+ KTAFRT +G YE+ VMPFGVTNAP F + M+RI
Sbjct: 597 ARVFSKIDLRSGYHQIKVKDEDMQKTAFRTCYGHYEYKVMPFGVTNAPGVFMEYMNRIFH 656

Query: 226 LH-RQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
+F +F DIL++S TEE H HL+ + Q L++ KL K EF+L E+
Sbjct: 657 AFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEV 710


>tr|A5BBP7|A5BBP7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027150 PE=4 SV=1
Length = 1495

Score = 197 bits (501), Expect = 4e-49
Identities = 91/176 (51%), Positives = 132/176 (75%), Gaps = 1/176 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
++L + +RPSTSP + V V+KKDGT R+CIDYR LN++T+KN++P+PRIDD+ D+L+
Sbjct: 654 ELLGRGFIRPSTSPWGAPVLFVKKKDGTLRLCIDYRKLNRVTVKNKYPLPRIDDLFDQLK 713

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
G + FS+IDL++GYHQ+ + ED+ KTAFRT +G YEFLVMPFG+TNAPA F +M+R+
Sbjct: 714 GAKYFSKIDLRTGYHQLRVREEDVSKTAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVF 773

Query: 229 RLHRQ-FTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEIH 65
R + F +F DIL++S + E HK+HL T L++++L KSEF+LTE++
Sbjct: 774 RAYLDXFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLDKSEFWLTEVN 829


>tr|Q5JPW2|Q5JPW2_ORYSA OSJNBa0085C10.29 protein OS=Oryza sativa
GN=OSJNBa0085C10.29 PE=4 SV=1
Length = 626

Score = 193 bits (490), Expect(2) = 1e-48
Identities = 91/179 (50%), Positives = 130/179 (72%), Gaps = 1/179 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
++ DK VRPS+SP + V V+KKDG+ RMC+DYRSLNK+TIKN++P+PRIDD+ D+L+
Sbjct: 341 ELQDKGYVRPSSSPWGAQVLFVKKKDGSMRMCVDYRSLNKVTIKNKYPLPRIDDLFDQLK 400

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRI- 233
G ++FS+IDL+S YHQ+ I P DI KTAF T +GLYEF VM FG+TNAPA F +M+++
Sbjct: 401 GAKVFSKIDLRSEYHQLKIRPRDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVF 460

Query: 232 LRLHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEIH*LC 56
+ +F +F DIL++S EE H HL + ++L++++L K EF+L E+ LC
Sbjct: 461 MEYLDKFVVVFIDDILIYSKDEEEHAEHLSQVLEKLREHQLYAKFSKCEFWLKEVAFLC 519



Score = 23.9 bits (50), Expect(2) = 1e-48
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3

Query: 57 VSYNQVRMDPTKVQAISDW 1
+S V +DP KV+A+++W
Sbjct: 522 ISAGGVAVDPAKVEAMTEW 540


>tr|Q84KB0|Q84KB0_CUCME Pol protein OS=Cucumis melo PE=4 SV=1
Length = 923

Score = 196 bits (497), Expect = 1e-48
Identities = 91/175 (52%), Positives = 127/175 (72%), Gaps = 1/175 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
++LDK +RPS SP + V V+KKDG+ R+CIDYR LNK+T+KNR+P+PRIDD+ D+LQ
Sbjct: 15 ELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQ 74

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
G +FS+IDL+SGYHQ+ I ED+ KTAFR+ +G Y+F+VM FG+TNAPA F +M+R+
Sbjct: 75 GATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYQFIVMSFGLTNAPAVFMDLMNRVF 134

Query: 229 R-LHRQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
R F +F DIL++S TE H+ HL+ + Q L+ NKL K EF+L ++
Sbjct: 135 REFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQV 189


>tr|A5C4G3|A5C4G3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_020888 PE=4 SV=1
Length = 893

Score = 196 bits (497), Expect = 1e-48
Identities = 91/176 (51%), Positives = 132/176 (75%), Gaps = 1/176 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
++L K +RPSTSP + V V+KKDGT R+CIDYR LN++T+KN++P+PRIDD+ D+L+
Sbjct: 15 ELLGKGFIRPSTSPWGAPVLSVKKKDGTLRLCIDYRKLNRVTVKNKYPLPRIDDLFDQLK 74

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
G + FS+IDL++GYHQ+ I E++ KTAFRT +G YEFLVMPFG+TN P F +M+R+
Sbjct: 75 GAKYFSKIDLRTGYHQLRIREENVSKTAFRTRYGHYEFLVMPFGLTNVPIAFMDLMNRVF 134

Query: 229 RLH-RQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEIH 65
R + QF +F DIL++S + E HK+HL T + L++++L KSEF+LTE++
Sbjct: 135 RAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLKTLRRHQLYGKLDKSEFWLTEVN 190


>tr|A5C4G2|A5C4G2_VITVI Putative uncharacterized protein (Fragment)
OS=Vitis vinifera GN=VITISV_020887 PE=4 SV=1
Length = 701

Score = 196 bits (497), Expect = 1e-48
Identities = 91/176 (51%), Positives = 132/176 (75%), Gaps = 1/176 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
++L K +RPSTSP + V V+KKDGT R+CIDYR LN++T+KN++P+PRIDD+ D+L+
Sbjct: 203 ELLGKGFIRPSTSPWGAPVLSVKKKDGTLRLCIDYRKLNRVTVKNKYPLPRIDDLFDQLK 262

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
G + FS+IDL++GYHQ+ I E++ KTAFRT +G YEFLVMPFG+TN P F +M+R+
Sbjct: 263 GAKYFSKIDLRTGYHQLRIREENVSKTAFRTRYGHYEFLVMPFGLTNVPIAFMDLMNRVF 322

Query: 229 RLH-RQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEIH 65
R + QF +F DIL++S + E HK+HL T + L++++L KSEF+LTE++
Sbjct: 323 RAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLKTLRRHQLYGKLDKSEFWLTEVN 378


>tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g28690 PE=4 SV=1
Length = 1470

Score = 191 bits (486), Expect(2) = 2e-48
Identities = 90/175 (51%), Positives = 130/175 (74%), Gaps = 1/175 (0%)
Frame = -2

Query: 589 QVLDKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQ 410
++ +K VRPS+SP + V V+KKDG+ RMC+DYRSLN++TIKN++P+PRIDD+ D+L+
Sbjct: 564 ELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLK 623

Query: 409 GPRIFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRIL 230
G ++FS+IDL+SGYHQ+ I EDI KTAF T +GLYEF VM FG+TNAPA F +M+++
Sbjct: 624 GAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVF 683

Query: 229 RLH-RQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
+ +F +F DIL++S EE H HL+ + Q+L+++KL K EF+L E+
Sbjct: 684 MDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFWLKEV 738



Score = 24.6 bits (52), Expect(2) = 2e-48
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3

Query: 57 VSYNQVRMDPTKVQAISDW 1
+S V +DP KV+A+++W
Sbjct: 745 ISAGGVAVDPAKVEAVTEW 763


>tr|Q8RU68|Q8RU68_ORYSA Putative 22 kDa kafirin cluster; Ty3-Gypsy
type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1
Length = 1230

Score = 195 bits (495), Expect = 2e-48
Identities = 91/172 (52%), Positives = 126/172 (73%), Gaps = 1/172 (0%)
Frame = -2

Query: 580 DKALVRPSTSPHCSLVSLVQKKDGTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGPR 401
DK + PS SP + V V+KKDG+ R+C DYR LNK+TIKN++P+PRIDD+ D+LQG R
Sbjct: 521 DKGFIHPSVSPWGAPVLFVKKKDGSLRLCTDYRELNKVTIKNKYPLPRIDDLFDQLQGAR 580

Query: 400 IFSRIDLKSGYHQICIAPEDIHKTAFRTTFGLYEFLVMPFGVTNAPATFNQMMDRILRLH 221
+FS+IDL+SGYHQ+ I P DI KTAFR +G YE+LVMPFG+TNAPA F +M+RI + +
Sbjct: 581 VFSKIDLQSGYHQLKIKPSDIPKTAFRARYGHYEYLVMPFGLTNAPAAFMDLMNRIFKPY 640

Query: 220 -RQFTGIFFGDILVFSHTEEAHKRHLQTMFQELQQNKLQVNAKKSEFFLTEI 68
QF +F DIL++S T+E H HL+ + Q L+ +KL KK +F++ ++
Sbjct: 641 LDQFVVVFIDDILIYSKTKEDHANHLRIVLQTLRDHKLFAKLKKCDFWMDKV 692