BP914715
Clone id YMU001_000062_B01
Library
Length 264
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACATGATTAGAATGATTGGCCGCACAGACTTGGGCGGCGAATACAGAAACCAGGCTCTTA
AAAGAGATGAATTAAAATTTGGTGATGTGCCTCATCGTTACAAAAGTGTATGTTCACAAG
GTCTCCTTGAGAGAAAAAAGGGCTACGAACGCATTGTCGTTGTCTCCGAGGATAAATCAT
TGATTTCTAGACAGAGGGCTTCTGGACAAGGAAGCCGGAGACCTGCACCTGCCTCTTAGC
GTCAAAGCCCAGCACGCGGATGAA
■■Homology search results ■■ -
sp_hit_id P26985
Definition sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii
Align length 23
Score (bit) 36.2
E-value 0.053
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914715|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_B01.
(264 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai... 36 0.053
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16129|RBS1_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 35 0.090
sp|Q38693|RBS7_ACECL Ribulose bisphosphate carboxylase small cha... 34 0.20
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 34 0.20
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 34 0.20
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 34 0.20
sp|Q9XGX5|RBS2_AMAHP Ribulose bisphosphate carboxylase small cha... 34 0.20
sp|Q42516|RBS1_AMAHP Ribulose bisphosphate carboxylase small cha... 34 0.20
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha... 34 0.26
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha... 34 0.26
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 33 0.34
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 33 0.34
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 33 0.34

>sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2
Length = 175

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 139 YIRLVCFDANRQVQISGFLVHRP 161


>sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small chain
6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6
PE=3 SV=1
Length = 182

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 146 YIRLVCFDANRQVQISGFLVHRP 168


>sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small chain
5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5
PE=2 SV=1
Length = 184

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 148 YIRLVCFDANRQVQISGFLVHRP 170


>sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small chain
5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5
PE=2 SV=1
Length = 183

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 147 YIRLVCFDANRQVQISGFLVHRP 169


>sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small chain
4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4
PE=2 SV=1
Length = 182

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 146 YIRLVCFDANRQVQISGFLVHRP 168


>sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small chain
4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4
PE=2 SV=1
Length = 182

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 146 YIRLVCFDANRQVQISGFLVHRP 168


>sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small chain
3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3
PE=2 SV=1
Length = 183

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 147 YIRLVCFDANRQVQISGFLVHRP 169


>sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small chain
3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3
PE=2 SV=1
Length = 182

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 146 YIRLVCFDANRQVQISGFLVHRP 168


>sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small chain
2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3
SV=1
Length = 86

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 50 YIRLVCFDANRQVQISGFLVHRP 72


>sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small chain
2, chloroplastic (Fragment) OS=Acetabularia acetabulum
GN=RBCS-2 PE=2 SV=1
Length = 173

Score = 36.2 bits (82), Expect = 0.053
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
+IR++ FDA RQVQ+SGFLV +P
Sbjct: 137 YIRLVCFDANRQVQISGFLVHRP 159


tr_hit_id Q43109
Definition tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small chain (Fragment) OS=Pteris vittata
Align length 24
Score (bit) 47.8
E-value 0.0003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914715|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_B01.
(264 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small c... 48 3e-04
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 47 4e-04
tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small c... 46 0.001
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 39 0.13
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 39 0.13
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 39 0.13
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 39 0.17
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c... 39 0.17
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 39 0.17
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 39 0.17
tr|Q68BK3|Q68BK3_NANBA Ribulose bisphosphate carboxylase small c... 37 0.49
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 37 0.64
tr|Q7XYK6|Q7XYK6_BIGNA Ribulose-1,5-bisphosphate carboxylase/oxy... 36 0.83
tr|Q33BU5|Q33BU5_CHLPY Ribulose bisphosphate carboxylase small c... 36 0.83
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 36 0.83
tr|Q39387|Q39387_BATOE Ribulose bisphosphate carboxylase small c... 36 1.1
tr|B3TFH0|B3TFH0_9EUKA Chloroplast ribulose-1,5-bisphosphate car... 36 1.1
tr|B3TFG9|B3TFG9_9EUKA Chloroplast ribulose-1,5-bisphosphate car... 36 1.1
tr|Q8SAQ3|Q8SAQ3_NICBE Ribulose bisphosphate carboxylase small c... 35 1.4
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 35 1.4
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c... 35 1.4
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c... 35 1.4

>tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Pteris vittata GN=rbcS3 PE=2 SV=1
Length = 43

Score = 47.8 bits (112), Expect = 3e-04
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
FIRVLGFDAKRQVQV+GFLVQ+PS
Sbjct: 19 FIRVLGFDAKRQVQVAGFLVQRPS 42


>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 47.4 bits (111), Expect = 4e-04
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
FIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 150 FIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Pteris vittata GN=rbcS1 PE=2 SV=1
Length = 34

Score = 45.8 bits (107), Expect = 0.001
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196
FIRVLGFDAKRQVQV+GFLV+KP
Sbjct: 12 FIRVLGFDAKRQVQVAGFLVKKP 34


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 38.9 bits (89), Expect = 0.13
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 191 WVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 38.9 bits (89), Expect = 0.13
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 160 WVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 38.9 bits (89), Expect = 0.13
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 161 WVRVLGFDSKKQVQICGFLVSRPN 184


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 38.5 bits (88), Expect = 0.17
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 161 WVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_226715 PE=3 SV=1
Length = 91

Score = 38.5 bits (88), Expect = 0.17
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 68 WVRVLGFDSKKQVQICGFLVARPN 91


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 38.5 bits (88), Expect = 0.17
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 156 WVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 38.5 bits (88), Expect = 0.17
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -1

Query: 264 FIRVLGFDAKRQVQVSGFLVQKPS 193
++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 156 WVRVLGFDSKKQVQICGFLVARPN 179