BP914715 |
Clone id |
YMU001_000062_B01 |
Library |
YMU01 |
Length |
264 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000062_B01. |
Accession |
BP914715 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2Contig4 |
Sequence |
ACATGATTAGAATGATTGGCCGCACAGACTTGGGCGGCGAATACAGAAACCAGGCTCTTA AAAGAGATGAATTAAAATTTGGTGATGTGCCTCATCGTTACAAAAGTGTATGTTCACAAG GTCTCCTTGAGAGAAAAAAGGGCTACGAACGCATTGTCGTTGTCTCCGAGGATAAATCAT TGATTTCTAGACAGAGGGCTTCTGGACAAGGAAGCCGGAGACCTGCACCTGCCTCTTAGC GTCAAAGCCCAGCACGCGGATGAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26985 |
Definition |
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii |
Align length |
23 |
Score (bit) |
36.2 |
E-value |
0.053 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914715|Adiantum capillus-veneris mRNA, clone: YMU001_000062_B01. (264 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai... 36 0.053 sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16129|RBS1_ACECL Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha... 36 0.053 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 35 0.090 sp|Q38693|RBS7_ACECL Ribulose bisphosphate carboxylase small cha... 34 0.20 sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 34 0.20 sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 34 0.20 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 34 0.20 sp|Q9XGX5|RBS2_AMAHP Ribulose bisphosphate carboxylase small cha... 34 0.20 sp|Q42516|RBS1_AMAHP Ribulose bisphosphate carboxylase small cha... 34 0.20 sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26 sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26 sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26 sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26 sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26 sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha... 34 0.26 sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha... 34 0.26 sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha... 34 0.26 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 33 0.34 sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 33 0.34 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 33 0.34
>sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2 Length = 175
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 139 YIRLVCFDANRQVQISGFLVHRP 161
>sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1 Length = 182
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 146 YIRLVCFDANRQVQISGFLVHRP 168
>sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1 Length = 184
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 148 YIRLVCFDANRQVQISGFLVHRP 170
>sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1 Length = 183
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 147 YIRLVCFDANRQVQISGFLVHRP 169
>sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1 Length = 182
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 146 YIRLVCFDANRQVQISGFLVHRP 168
>sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1 Length = 182
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 146 YIRLVCFDANRQVQISGFLVHRP 168
>sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1 Length = 183
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 147 YIRLVCFDANRQVQISGFLVHRP 169
>sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1 Length = 182
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 146 YIRLVCFDANRQVQISGFLVHRP 168
>sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1 Length = 86
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 50 YIRLVCFDANRQVQISGFLVHRP 72
>sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1 Length = 173
Score = 36.2 bits (82), Expect = 0.053 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -1
Query: 264 FIRVLGFDAKRQVQVSGFLVQKP 196 +IR++ FDA RQVQ+SGFLV +P Sbjct: 137 YIRLVCFDANRQVQISGFLVHRP 159
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43109 |
Definition |
tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small chain (Fragment) OS=Pteris vittata |
Align length |
24 |
Score (bit) |
47.8 |
E-value |
0.0003 |
Report |
|