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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914717
Clone id YMU001_000062_B03
Library
Length 369
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGCCACAGCTCGCATCGCACAAGGAGTGTCGACTCTTAAAAGAAGACTTATACAATGAC
GAGGAGCAACAAATGCTGCCTACTTTGTCTTTGAGAAGGACACAGCAAGCCCACACATGT
GCCCACAAAGAATAAATCTAGAGGCTGAAAAAAATACGACGCACACTGTAGTTTAATGCT
TTCTTCGTGACTTCATCCCTGGGTCAACTATATATTAGCTCTTCCAATCATAAATGAGAC
ACCGGCAAGCATTGGCTCTTTTATATCCTACGTTAAGCAAAGACAGGTAAGAAAGACAAT
CACCATTTCCTCTGCAGCTCATTTACGCCTGCTTACTCTTCCAAGGCTGCAGAACTGACA
CCACTATAA
■■Homology search results ■■ -
sp_hit_id Q9FH09
Definition sp|Q9FH09|HDA7_ARATH Histone deacetylase 7 OS=Arabidopsis thaliana
Align length 40
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914717|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_B03.
         (369 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FH09|HDA7_ARATH Histone deacetylase 7 OS=Arabidopsis thalia...    32   1.3  
sp|P35993|HOX7P_XENLA Homeobox protein XHOX-7.1' (Fragment) OS=X...    30   3.7  
sp|A4VX47|MURC_STRSY UDP-N-acetylmuramate--L-alanine ligase OS=S...    30   4.9  
sp|A4W3F1|MURC_STRS2 UDP-N-acetylmuramate--L-alanine ligase OS=S...    30   4.9  
sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicali...    30   4.9  
sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN...    30   4.9  
sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus G...    30   4.9  
sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii GN=H...    30   4.9  
sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus GN=H...    30   4.9  
sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=H...    30   4.9  
sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=...    30   4.9  
sp|A3CPS7|MURC_STRSV UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q8DP40|MURC_STRR6 UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q97PS8|MURC_STRPN UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q48V60|MURC_STRPM UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|A2RGA7|MURC_STRPG UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q1J8C6|MURC_STRPF UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q1JIH1|MURC_STRPD UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q1JNC1|MURC_STRPC UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q1JDE8|MURC_STRPB UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q8P2E1|MURC_STRP8 UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q5XDR0|MURC_STRP6 UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q8K8J5|MURC_STRP3 UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q04HS5|MURC_STRP2 UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q9A1C7|MURC_STRP1 UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   6.4  
sp|Q5U236|PERQ2_XENLA PERQ amino acid-rich with GYF domain-conta...    29   8.3  
sp|Q03MH6|MURC_STRTD UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   8.3  
sp|Q5M641|MURC_STRT2 UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   8.3  
sp|Q5M1J9|MURC_STRT1 UDP-N-acetylmuramate--L-alanine ligase OS=S...    29   8.3  

>sp|Q9FH09|HDA7_ARATH Histone deacetylase 7 OS=Arabidopsis thaliana
           GN=HDA7 PE=2 SV=1
          Length = 409

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -3

Query: 322 MSCRGNGDCLSYLSLLNV--------GYKRANACRCLIYD 227
           +S +G+GDCL Y+   NV        GY   N  RC  Y+
Sbjct: 279 LSIKGHGDCLQYVRSFNVPLMILGGGGYTLPNVARCWCYE 318


>sp|P35993|HOX7P_XENLA Homeobox protein XHOX-7.1' (Fragment)
           OS=Xenopus laevis PE=2 SV=1
          Length = 291

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 4   PQLASHKECRLLKEDLYNDEEQQMLPTLS 90
           P L +    R +KEDL +DEE Q+ PTLS
Sbjct: 24  PLLTAMSSPRRIKEDLSSDEEGQVHPTLS 52


>sp|A4VX47|MURC_STRSY UDP-N-acetylmuramate--L-alanine ligase
           OS=Streptococcus suis (strain 05ZYH33) GN=murC PE=3 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 60  RGATNAAYFVFEKDTASPHMCP 125
           RG+ NA YFVFE D    H  P
Sbjct: 141 RGSANAQYFVFESDEYERHFAP 162


>sp|A4W3F1|MURC_STRS2 UDP-N-acetylmuramate--L-alanine ligase
           OS=Streptococcus suis (strain 98HAH33) GN=murC PE=3 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 60  RGATNAAYFVFEKDTASPHMCP 125
           RG+ NA YFVFE D    H  P
Sbjct: 141 RGSANAQYFVFESDEYERHFAP 162


>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis
           GN=hdac3 PE=2 SV=1
          Length = 428

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -3

Query: 322 MSCRGNGDCLSYLSLLNV--------GYKRANACRCLIYD 227
           +S RG+G+C+ Y+   N+        GY   N  RC  Y+
Sbjct: 271 LSIRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYE 310


>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis
           GN=hdac3 PE=2 SV=2
          Length = 428

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -3

Query: 322 MSCRGNGDCLSYLSLLNV--------GYKRANACRCLIYD 227
           +S RG+G+C+ Y+   N+        GY   N  RC  Y+
Sbjct: 271 LSIRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYE 310


>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus
           GN=Hdac3 PE=1 SV=1
          Length = 428

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -3

Query: 322 MSCRGNGDCLSYLSLLNV--------GYKRANACRCLIYD 227
           +S RG+G+C+ Y+   N+        GY   N  RC  Y+
Sbjct: 271 LSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYE 310


>sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii
           GN=HDAC3 PE=2 SV=1
          Length = 428

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -3

Query: 322 MSCRGNGDCLSYLSLLNV--------GYKRANACRCLIYD 227
           +S RG+G+C+ Y+   N+        GY   N  RC  Y+
Sbjct: 271 LSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYE 310


>sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus
           GN=Hdac3 PE=1 SV=1
          Length = 424

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -3

Query: 322 MSCRGNGDCLSYLSLLNV--------GYKRANACRCLIYD 227
           +S RG+G+C+ Y+   N+        GY   N  RC  Y+
Sbjct: 271 LSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYE 310


>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens
           GN=HDAC3 PE=1 SV=2
          Length = 428

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -3

Query: 322 MSCRGNGDCLSYLSLLNV--------GYKRANACRCLIYD 227
           +S RG+G+C+ Y+   N+        GY   N  RC  Y+
Sbjct: 271 LSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYE 310
tr_hit_id A5UZ93
Definition tr|A5UZ93|A5UZ93_ROSS1 Undecaprenyl-diphosphatase OS=Roseiflexus sp. (strain RS-1)
Align length 47
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914717|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_B03.
         (369 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5UZ93|A5UZ93_ROSS1 Undecaprenyl-diphosphatase OS=Roseiflexus...    34   4.2  
tr|B6AJ24|B6AJ24_9CRYT RNB-like domain-containing protein OS=Cry...    33   7.1  

>tr|A5UZ93|A5UZ93_ROSS1 Undecaprenyl-diphosphatase OS=Roseiflexus
           sp. (strain RS-1) GN=RoseRS_3591 PE=3 SV=1
          Length = 286

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 191 LHPWVNYILALPIINETPASIGSFISYVKQRQVRKTITISSAAHLRL 331
           LH W+  +L  P++  T   +G  +  + +R  R+T T+  A  L L
Sbjct: 117 LHGWIKAVLFSPVVIGTALIVGGIVLIIVERLPRRTATVHDATRLSL 163


>tr|B6AJ24|B6AJ24_9CRYT RNB-like domain-containing protein
           OS=Cryptosporidium muris RN66 GN=CMU_011660 PE=4 SV=1
          Length = 975

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 192 FIPGSTIY*LFQS*MRHRQALALLYPTLSKDR*ERQSPFPLQLIYACLLFQGCRTDTTI 368
           F+P   +Y L +  +R+     LL P  S     ++ P PL ++Y C + QG  T   I
Sbjct: 193 FVPLLKVYPLIKIHLRNSVIKKLLAPFTSNINDTKKIPIPLNILYTCNILQGTSTSRYI 251