NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914718
Clone id YMU001_000062_B04
Library
Length 215
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATATCCTTCAAAGTACCAAGGATCTTGCAGTGCTTGTGGTGGTCTCTGACTATTTGCATC
AAAATCTTGGGGCAAAGAGCATTGTTGAAGTTTTACAAACAGAGGGTCATTTGCCGCAAC
TCAGCTCTCCGAATGTCGTCATTCCTGCTTTGAAGCGGCATCTGGAGCTGGTCATTTGAT
CTCGGTGAATGGACTGATTTCTTGAGGTCTCATCA
■■Homology search results ■■ -
sp_hit_id O07015
Definition sp|O07015|RSBQ_BACSU Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis
Align length 55
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914718|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_B04.
         (215 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O07015|RSBQ_BACSU Sigma factor sigB regulation protein rsbQ O...    34   0.20 
sp|Q61290|CAC1E_MOUSE Voltage-dependent R-type calcium channel s...    31   1.7  
sp|Q15878|CAC1E_HUMAN Voltage-dependent R-type calcium channel s...    31   1.7  
sp|Q07652|CAC1E_RAT Voltage-dependent R-type calcium channel sub...    30   3.7  

>sp|O07015|RSBQ_BACSU Sigma factor sigB regulation protein rsbQ
           OS=Bacillus subtilis GN=rsbQ PE=1 SV=1
          Length = 269

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHLE 167
           ILQ   D+     V  Y+HQ+L   S+ + ++  GH P +S P+  I  +  +L+
Sbjct: 213 ILQCADDIIAPATVGKYMHQHLPYSSLKQ-MEARGHCPHMSHPDETIQLIGDYLK 266


>sp|Q61290|CAC1E_MOUSE Voltage-dependent R-type calcium channel
            subunit alpha-1E OS=Mus musculus GN=Cacna1e PE=1 SV=1
          Length = 2272

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 111  NDPLFVKLQQCSLPQDFDANSQRPPQALQDP 19
            N P+F +++  SLPQ+  AN++  P   QDP
Sbjct: 1898 NAPMFQRMEPSSLPQEIIANAKALPYLQQDP 1928


>sp|Q15878|CAC1E_HUMAN Voltage-dependent R-type calcium channel
            subunit alpha-1E OS=Homo sapiens GN=CACNA1E PE=1 SV=3
          Length = 2313

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 111  NDPLFVKLQQCSLPQDFDANSQRPPQALQDP 19
            N P+F +++  SLPQ+  AN++  P   QDP
Sbjct: 1895 NAPMFQRMEPSSLPQEIIANAKALPYLQQDP 1925


>sp|Q07652|CAC1E_RAT Voltage-dependent R-type calcium channel subunit
            alpha-1E OS=Rattus norvegicus GN=Cacna1e PE=2 SV=1
          Length = 2222

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 111  NDPLFVKLQQCSLPQDFDANSQRPPQALQDP 19
            N P+F +++  SLPQ+  +N++  P   QDP
Sbjct: 1847 NAPMFQRMEPSSLPQEIISNAKALPYLQQDP 1877
tr_hit_id B8LRQ6
Definition tr|B8LRQ6|B8LRQ6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 55
Score (bit) 87.8
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914718|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_B04.
         (215 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LRQ6|B8LRQ6_PICSI Putative uncharacterized protein OS=Picea...    88   2e-16
tr|A9SSF6|A9SSF6_PHYPA Predicted protein OS=Physcomitrella paten...    87   4e-16
tr|A9T1J2|A9T1J2_PHYPA Predicted protein OS=Physcomitrella paten...    85   2e-15
tr|A9SKF7|A9SKF7_PHYPA Predicted protein OS=Physcomitrella paten...    84   5e-15
tr|A9ST85|A9ST85_PHYPA Predicted protein OS=Physcomitrella paten...    83   6e-15
tr|A5B7C0|A5B7C0_VITVI Putative uncharacterized protein (Chromos...    83   6e-15
tr|A9TW81|A9TW81_PHYPA Predicted protein OS=Physcomitrella paten...    83   8e-15
tr|Q75KE2|Q75KE2_ORYSJ Putative hydrolases OS=Oryza sativa subsp...    82   1e-14
tr|Q10J20|Q10J20_ORYSJ Os03g0437600 protein OS=Oryza sativa subs...    82   1e-14
tr|B4FHV3|B4FHV3_MAIZE Putative uncharacterized protein OS=Zea m...    82   1e-14
tr|A3AJG0|A3AJG0_ORYSJ Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|A2XID1|A2XID1_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|B7FK41|B7FK41_MEDTR Putative uncharacterized protein OS=Medic...    82   1e-14
tr|B6TZE5|B6TZE5_MAIZE Sigma factor sigB regulation protein rsbQ...    80   4e-14
tr|A9PJB4|A9PJB4_POPJC Putative uncharacterized protein OS=Popul...    80   5e-14
tr|Q9SZU7|Q9SZU7_ARATH Putative uncharacterized protein F6G17.12...    79   1e-13
tr|A9TC36|A9TC36_PHYPA Predicted protein OS=Physcomitrella paten...    69   9e-11
tr|A9SLP7|A9SLP7_PHYPA Predicted protein OS=Physcomitrella paten...    68   2e-10
tr|Q1W3B2|Q1W3B2_STRAF Catalytic hydrolase OS=Striga asiatica PE...    62   1e-08
tr|A9SG07|A9SG07_PHYPA Predicted protein OS=Physcomitrella paten...    61   2e-08
tr|A9SMQ5|A9SMQ5_PHYPA Predicted protein OS=Physcomitrella paten...    61   3e-08
tr|A9S299|A9S299_PHYPA Predicted protein OS=Physcomitrella paten...    59   9e-08
tr|A9PFX7|A9PFX7_POPTR Putative uncharacterized protein OS=Popul...    57   4e-07
tr|Q10QA5|Q10QA5_ORYSJ Os03g0203200 protein OS=Oryza sativa subs...    55   2e-06
tr|B6TRW7|B6TRW7_MAIZE Sigma factor sigB regulation protein rsbQ...    55   2e-06
tr|Q8L9M4|Q8L9M4_ARATH Putative uncharacterized protein OS=Arabi...    54   3e-06
tr|Q9SQR3|Q9SQR3_ARATH T11I18.10 protein (AT3g03990/T11I18_10) O...    54   5e-06
tr|A7NU89|A7NU89_VITVI Chromosome chr18 scaffold_1, whole genome...    54   5e-06
tr|A9P1M0|A9P1M0_PICSI Putative uncharacterized protein OS=Picea...    47   4e-04
tr|A9NP75|A9NP75_PICSI Putative uncharacterized protein OS=Picea...    47   4e-04

>tr|B8LRQ6|B8LRQ6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 267

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHLE 167
           ILQS+KDLAV V V+DY+HQNLGAKSIVE+L +EGHLPQLSSP +VIP L RH+E
Sbjct: 210 ILQSSKDLAVPVTVADYIHQNLGAKSIVEILPSEGHLPQLSSPAIVIPVLLRHIE 264


>tr|A9SSF6|A9SSF6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234012 PE=4 SV=1
          Length = 271

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 42/54 (77%), Positives = 47/54 (87%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHL 164
           ILQS+KDLAV +VV+DYLH  LG  +IVEVLQTEGHLPQLSSP +VIP LKRHL
Sbjct: 214 ILQSSKDLAVPIVVADYLHHTLGGPTIVEVLQTEGHLPQLSSPEIVIPVLKRHL 267


>tr|A9T1J2|A9T1J2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_190706 PE=4 SV=1
          Length = 272

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 41/54 (75%), Positives = 47/54 (87%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHL 164
           ILQS++DLAV V+VSDY+HQ +   SIVEVL TEGHLPQLSSP+VVIP LKRHL
Sbjct: 214 ILQSSRDLAVPVIVSDYIHQRISGASIVEVLHTEGHLPQLSSPDVVIPVLKRHL 267


>tr|A9SKF7|A9SKF7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_213263 PE=4 SV=1
          Length = 274

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 41/54 (75%), Positives = 47/54 (87%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHL 164
           ILQS+KDLAV VVV+DYLH  LG  +IVEVL TEGHLPQLSSP++VIP LKRH+
Sbjct: 214 ILQSSKDLAVPVVVADYLHLTLGGPTIVEVLPTEGHLPQLSSPDIVIPVLKRHV 267


>tr|A9ST85|A9ST85_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_215526 PE=4 SV=1
          Length = 270

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 40/54 (74%), Positives = 47/54 (87%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHL 164
           ILQS+KDLAV +VV+DYLH  LG  +IVEVL TEGHLPQLSSP+++IP LKRHL
Sbjct: 213 ILQSSKDLAVPLVVADYLHHALGGPTIVEVLPTEGHLPQLSSPDIIIPVLKRHL 266


>tr|A5B7C0|A5B7C0_VITVI Putative uncharacterized protein (Chromosome
           chr7 scaffold_20, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00019624001 PE=4 SV=1
          Length = 270

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 39/54 (72%), Positives = 48/54 (88%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHL 164
           ILQS KDLAV VVVS+YLHQNLG +SIVEV+ ++GHLPQLSSP++V+P L RH+
Sbjct: 211 ILQSIKDLAVPVVVSEYLHQNLGGESIVEVMTSDGHLPQLSSPDIVVPVLLRHI 264


>tr|A9TW81|A9TW81_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_61272 PE=4 SV=1
          Length = 266

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHL 164
           ILQS+KDLAV VVV+ YLH  LG  S VE+LQTEGHLPQLS+P+VVIP LKRHL
Sbjct: 207 ILQSSKDLAVPVVVASYLHHALGGPSAVEILQTEGHLPQLSAPDVVIPVLKRHL 260


>tr|Q75KE2|Q75KE2_ORYSJ Putative hydrolases OS=Oryza sativa subsp.
           japonica GN=OSJNBa0054H04.8 PE=4 SV=1
          Length = 313

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/55 (70%), Positives = 49/55 (89%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHLE 167
           I+QSTKDLAV VVVS+YLH++LG  SIVEV+ +EGHLPQLSSP++VIP L RH++
Sbjct: 254 IVQSTKDLAVPVVVSEYLHKHLGGDSIVEVMPSEGHLPQLSSPDIVIPVLLRHIQ 308


>tr|Q10J20|Q10J20_ORYSJ Os03g0437600 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0437600 PE=2 SV=1
          Length = 271

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/55 (70%), Positives = 49/55 (89%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHLE 167
           I+QSTKDLAV VVVS+YLH++LG  SIVEV+ +EGHLPQLSSP++VIP L RH++
Sbjct: 212 IVQSTKDLAVPVVVSEYLHKHLGGDSIVEVMPSEGHLPQLSSPDIVIPVLLRHIQ 266


>tr|B4FHV3|B4FHV3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 271

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/55 (70%), Positives = 49/55 (89%)
 Frame = +3

Query: 3   ILQSTKDLAVLVVVSDYLHQNLGAKSIVEVLQTEGHLPQLSSPNVVIPALKRHLE 167
           I+QSTKDLAV VVVS+YLH++LG  SIVEV+ +EGHLPQLSSP++VIP L RH++
Sbjct: 212 IVQSTKDLAVPVVVSEYLHRHLGGDSIVEVMPSEGHLPQLSSPDIVIPVLLRHIQ 266