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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914722
Clone id YMU001_000062_B09
Library
Length 193
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACTGGTGTTGTACACTAAGAGGGCACCACCCAACAAGATAGCGCCGAGGGTAACTGCCC
AGATAGCCAATCCAGTAGGACCTGCAGCATAGCTATCACCAGAAGTTGACCATTCCTCTG
GGACATAGATAGGGCTGTATCCATCGACATTAGCACCATACTTCTTGGTATATTGGTAGA
CTCCCTTTCCCTT
■■Homology search results ■■ -
sp_hit_id P06183
Definition sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum
Align length 64
Score (bit) 90.1
E-value 3.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914722|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_B09.
         (193 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl...    90   3e-18
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl...    90   3e-18
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl...    89   7e-18
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl...    86   6e-17
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl...    85   1e-16
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl...    85   1e-16
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl...    84   2e-16
sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr...    30   5.0  
sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ...    30   5.0  
sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu...    30   5.0  

>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 44/64 (68%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQY  KYGANVDGYSPIY  +EWS SGD Y  G TGLAIWAVT          LV
Sbjct: 71  KGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLV 130

Query: 13  YNTS 2
           YNTS
Sbjct: 131 YNTS 134


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 44/64 (68%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQY  KYGANVDGYSPIY  +EWS SGD Y  G TGLAIWAVT          LV
Sbjct: 71  KGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLV 130

Query: 13  YNTS 2
           YNTS
Sbjct: 131 YNTS 134


>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
          Length = 138

 Score = 89.0 bits (219), Expect = 7e-18
 Identities = 42/64 (65%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL +WAVT          LV
Sbjct: 71  KGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLV 130

Query: 13  YNTS 2
           Y+TS
Sbjct: 131 YSTS 134


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
          Length = 136

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 41/64 (64%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY  ++WS SGD Y  G TGLAIWAVT          LV
Sbjct: 69  KGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLV 128

Query: 13  YNTS 2
           +NTS
Sbjct: 129 FNTS 132


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
          Length = 140

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 41/63 (65%), Positives = 44/63 (69%)
 Frame = -1

Query: 190 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 11
           GKGVYQ+  KYGANVDGYSPIY  EEW+ +GD YA G TGL IWAVT          LVY
Sbjct: 74  GKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVY 133

Query: 10  NTS 2
           NTS
Sbjct: 134 NTS 136


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
          Length = 140

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 42/64 (65%), Positives = 43/64 (67%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KG GVY+Y  KYGANVDGYSPIY   EWS SGD Y  G TGLAIWAVT          LV
Sbjct: 73  KGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLV 132

Query: 13  YNTS 2
           YNTS
Sbjct: 133 YNTS 136


>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
          Length = 141

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 41/64 (64%), Positives = 44/64 (68%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KG GVY++  KYGANVDGYSPIY  +EWS SGD Y  G TGLAIWAVT          LV
Sbjct: 74  KGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLV 133

Query: 13  YNTS 2
           YNTS
Sbjct: 134 YNTS 137


>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal
           transduction-associated protein 2 OS=Rattus norvegicus
           GN=Khdrbs2 PE=1 SV=1
          Length = 349

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 172 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 77
           Y   +G N D Y   Y PEEW+T+  S  A P
Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333


>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal
           transduction-associated protein 2 OS=Mus musculus
           GN=Khdrbs2 PE=1 SV=1
          Length = 349

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 172 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 77
           Y   +G N D Y   Y PEEW+T+  S  A P
Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWATTRSSLKAPP 333


>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus
           GN=Tcf7l1 PE=1 SV=2
          Length = 584

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 69  NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 164
           +P  P   LSPE+D  +G     +PS L+PY+
Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231
tr_hit_id A4ZGB4
Definition tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein OS=Agave tequilana
Align length 64
Score (bit) 90.9
E-value 3.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914722|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_B09.
         (193 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein...    91   3e-17
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu...    91   3e-17
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid...    91   4e-17
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza...    91   4e-17
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza...    91   4e-17
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro...    90   6e-17
tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=...    90   6e-17
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs...    89   8e-17
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif...    89   8e-17
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz...    89   8e-17
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme...    89   8e-17
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    89   8e-17
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza...    89   8e-17
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos...    89   1e-16
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs...    88   2e-16
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza...    88   2e-16
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul...    88   2e-16
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt...    87   3e-16
tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosop...    87   4e-16
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella paten...    87   5e-16
tr|A9PJW8|A9PJW8_POPJC Putative uncharacterized protein OS=Popul...    87   5e-16
tr|A9PH94|A9PH94_POPTR Putative uncharacterized protein OS=Popul...    87   5e-16
tr|A9PAP8|A9PAP8_POPTR Putative uncharacterized protein OS=Popul...    87   5e-16
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul...    86   7e-16
tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein...    86   9e-16
tr|Q1H8R2|Q1H8R2_CHERU Photosystem II 10 kDa polypeptide, chloro...    86   9e-16
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea...    86   9e-16
tr|A9RLG5|A9RLG5_PHYPA Predicted protein OS=Physcomitrella paten...    85   2e-15
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN...    85   2e-15
tr|B6SQV5|B6SQV5_MAIZE Photosystem II 10 kDa polypeptide OS=Zea ...    84   3e-15

>tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein
           OS=Agave tequilana PE=2 SV=1
          Length = 144

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 43/64 (67%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL IWA+T          LV
Sbjct: 77  KGKGVYQFVDKYGANVDGYSPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLAGGALLV 136

Query: 13  YNTS 2
           YNTS
Sbjct: 137 YNTS 140


>tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edulis
           PE=2 SV=1
          Length = 130

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 43/64 (67%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL IWA+T          LV
Sbjct: 63  KGKGVYQFVDKYGANVDGYSPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLGGGALLV 122

Query: 13  YNTS 2
           YNTS
Sbjct: 123 YNTS 126


>tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptide,
           chloroplast OS=Oryza sativa subsp. japonica
           GN=P0022E03.16 PE=4 SV=1
          Length = 134

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 43/64 (67%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL +WAVT          LV
Sbjct: 67  KGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDVYTGGKTGLLLWAVTLSGILLAGALLV 126

Query: 13  YNTS 2
           YNTS
Sbjct: 127 YNTS 130


>tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24892 PE=4 SV=1
          Length = 139

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 43/64 (67%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL +WAVT          LV
Sbjct: 72  KGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDLYTGGKTGLLLWAVTLSGILLAGALLV 131

Query: 13  YNTS 2
           YNTS
Sbjct: 132 YNTS 135


>tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022174 PE=4 SV=1
          Length = 251

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 43/64 (67%), Positives = 45/64 (70%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL +WAVT          LV
Sbjct: 184 KGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDVYTGGKTGLLLWAVTLSGILLAGALLV 243

Query: 13  YNTS 2
           YNTS
Sbjct: 244 YNTS 247



 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 27/35 (77%), Positives = 32/35 (91%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSY 89
           KGKG+YQ++ KYGANVDGYSPIY PEEWS++GD Y
Sbjct: 71  KGKGLYQFSNKYGANVDGYSPIYTPEEWSSTGDVY 105


>tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide,
           chloroplast OS=Salmo salar GN=PSBR PE=2 SV=1
          Length = 138

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 42/64 (65%), Positives = 44/64 (68%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY PEEWS  GD Y  G TGL +WAVT          LV
Sbjct: 71  KGKGVYQFANKYGANVDGYSPIYTPEEWSPGGDVYVGGKTGLFLWAVTLAGILLGGALLV 130

Query: 13  YNTS 2
           YNTS
Sbjct: 131 YNTS 134


>tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment)
           OS=Triticum aestivum PE=2 SV=1
          Length = 99

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 43/62 (69%), Positives = 44/62 (70%)
 Frame = -1

Query: 187 KGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYN 8
           KGVYQ+  KYGANVDGYSPIY PEEWS SGD YA G TGL IWAVT          LVYN
Sbjct: 34  KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTLAGLLGGGVLLVYN 93

Query: 7   TS 2
           TS
Sbjct: 94  TS 95


>tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subsp.
           japonica GN=P0556A11.19 PE=2 SV=1
          Length = 130

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 42/63 (66%), Positives = 45/63 (71%)
 Frame = -1

Query: 190 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 11
           GKGVYQ+  KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAVT          LVY
Sbjct: 64  GKGVYQFVDKYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVY 123

Query: 10  NTS 2
           NTS
Sbjct: 124 NTS 126


>tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide
           OS=Trifolium pratense PE=2 SV=1
          Length = 136

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 42/64 (65%), Positives = 46/64 (71%)
 Frame = -1

Query: 193 KGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLV 14
           KGKGVYQ+  KYGANVDGYSPIY P++WS +GD Y  G TGLAIWAVT          LV
Sbjct: 69  KGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGALLV 128

Query: 13  YNTS 2
           YNTS
Sbjct: 129 YNTS 132


>tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryza
           sativa PE=2 SV=1
          Length = 126

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 42/63 (66%), Positives = 45/63 (71%)
 Frame = -1

Query: 190 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVY 11
           GKGVYQ+  KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAVT          LVY
Sbjct: 60  GKGVYQFVDKYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVY 119

Query: 10  NTS 2
           NTS
Sbjct: 120 NTS 122