BP914728
Clone id YMU001_000062_C04
Library
Length 285
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGATTTATGCTTATCTCATCCTGCTCTCCTCCAATCTCTCAGTTCTAATGGATTATAGAG
GTTGTATCCTACTTTATCCCCTTCATTTCTTTCCCTGATTCCCATATCAGGGATTGAAAG
ACCAAAAATACCCTCCCTACATACTGCACTGGGCATTGTGCCGTGCCATGTCCTTAGCTA
AAGGAAATAGAAGAATGCCCTAAAGCTCTCACTTCGTGTAGCTCCTTGTGTTAGCCCTTC
CCAAAGACAAAAGCGCCCTACACATATGGGACTCTGGCCAGACTA
■■Homology search results ■■ -
sp_hit_id Q00961
Definition sp|Q00961|NMDE3_RAT Glutamate [NMDA] receptor subunit epsilon-3 OS=Rattus norvegicus
Align length 30
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914728|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_C04.
(285 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q00961|NMDE3_RAT Glutamate [NMDA] receptor subunit epsilon-3 ... 31 2.2
sp|Q01098|NMDE3_MOUSE Glutamate [NMDA] receptor subunit epsilon-... 31 2.2

>sp|Q00961|NMDE3_RAT Glutamate [NMDA] receptor subunit epsilon-3
OS=Rattus norvegicus GN=Grin2c PE=1 SV=1
Length = 1237

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1

Query: 88 SFPDSHIRD*KTKNTLPTYCTGH-CAVPCP 174
S P S N LP CTGH CA PCP
Sbjct: 1083 SLPSSVAEAFTRSNPLPARCTGHACACPCP 1112


>sp|Q01098|NMDE3_MOUSE Glutamate [NMDA] receptor subunit epsilon-3
OS=Mus musculus GN=Grin2c PE=2 SV=2
Length = 1239

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1

Query: 88 SFPDSHIRD*KTKNTLPTYCTGH-CAVPCP 174
S P S N LP CTGH CA PCP
Sbjct: 1084 SLPSSVAEAFTRSNPLPARCTGHACACPCP 1113


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914728|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_C04.
(285 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******