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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914732
Clone id YMU001_000062_C08
Library
Length 381
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGCGGTGCAGTTTGAGCAGCACTGGCTTTATGCCCAGACCGAACAACAATCTGTTTTGA
ATGACAATTTAAGCAGAAGGCTGGTTACAGAGCATTGTTTGAAGCGGCAGCCCTTATTGG
GGCAAGTGTACTACAAGTTTATCTTCTCCGCCGACTATTCAATAAGAAGCTCAACCAGTC
AAGGGTTTAGTGCTGTGTCTTTAGCAAGGGTTCATTGTCCCTTCAGGAAGCAGAGCTCCT
CTGTAGTAACTAACACATTTGGCTCGCATCAAGGGGCCCGAGTCCGTCTCTGTAGGTGGA
GGACATGGGAGAGTGAGGGGTCATATTGAAGAGTTTTACTTTTATGGGTTTACTTTCCCA
GATCTTAATTTGGATACAGTA
■■Homology search results ■■ -
sp_hit_id Q769F9
Definition sp|Q769F9|TMEDA_DICDI Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum
Align length 26
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914732|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_C08.
         (381 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q769F9|TMEDA_DICDI Transmembrane emp24 domain-containing prot...    29   6.3  
sp|P56945|BCAR1_HUMAN Breast cancer anti-estrogen resistance pro...    29   8.2  

>sp|Q769F9|TMEDA_DICDI Transmembrane emp24 domain-containing protein
           A OS=Dictyostelium discoideum GN=empA PE=3 SV=1
          Length = 205

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 92  ALFEAAALIGASVLQVYLLRRLFNKK 169
           ++FEA  LI  S+ Q+Y LRR F  K
Sbjct: 177 SVFEAFVLIALSIWQIYYLRRFFEVK 202


>sp|P56945|BCAR1_HUMAN Breast cancer anti-estrogen resistance
           protein 1 OS=Homo sapiens GN=BCAR1 PE=1 SV=1
          Length = 870

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 354 SKPIKVKLFNMTPHSPMSSTYRDGLGPLDASQMC*LLQRSSAS 226
           S+PI   L N TP  P++     GLGP D   +   L++  A+
Sbjct: 712 SRPIDHDLANWTPAQPLAPGRTGGLGPSDRQLLLFYLEQCEAN 754
tr_hit_id A9P981
Definition tr|A9P981|A9P981_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 34
Score (bit) 50.1
E-value 8.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914732|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_C08.
         (381 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P981|A9P981_POPTR Putative uncharacterized protein OS=Popul...    50   8e-12
tr|A7Q9A0|A7Q9A0_VITVI Chromosome chr19 scaffold_66, whole genom...    55   2e-06
tr|A5AV45|A5AV45_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|B6TE63|B6TE63_MAIZE Transmembrane emp24 domain-containing pro...    54   4e-06
tr|B6SUS5|B6SUS5_MAIZE Transmembrane emp24 domain-containing pro...    54   4e-06
tr|A0MAU7|A0MAU7_WHEAT Coated vesicle membrane protein-like OS=T...    54   5e-06
tr|Q9S7M9|Q9S7M9_ARATH Putative coated vesicle membrane protein ...    53   7e-06
tr|Q8L987|Q8L987_ARATH Putative coated vesicle membrane protein ...    53   7e-06
tr|B4FE73|B4FE73_MAIZE Putative uncharacterized protein OS=Zea m...    53   9e-06
tr|A7Q2Y1|A7Q2Y1_VITVI Chromosome chr12 scaffold_47, whole genom...    52   1e-05
tr|Q6YZD2|Q6YZD2_ORYSJ Os08g0532900 protein OS=Oryza sativa subs...    52   2e-05
tr|A2YXG3|A2YXG3_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|Q0J0I4|Q0J0I4_ORYSJ Os09g0507600 protein OS=Oryza sativa subs...    50   6e-05
tr|A9SKH6|A9SKH6_PHYPA Predicted protein OS=Physcomitrella paten...    50   6e-05
tr|A9TN56|A9TN56_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|A2Z2X8|A2Z2X8_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A9T3W4|A9T3W4_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.28 
tr|A9SXC5|A9SXC5_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.1  
tr|Q0DJ01|Q0DJ01_ORYSJ Os05g0345700 protein OS=Oryza sativa subs...    33   5.3  
tr|A2Y3F8|A2Y3F8_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.3  
tr|B3CRF1|B3CRF1_ORITI 2-oxoglutarate dehydrogenase e1 component...    33   7.0  

>tr|A9P981|A9P981_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 213

 Score = 50.1 bits (118), Expect(2) = 8e-12
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +2

Query: 86  YRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           ++A FE+AAL+ AS+LQVYLLRRLF +KL  SRV
Sbjct: 180 HKAFFESAALVAASILQVYLLRRLFERKLGMSRV 213



 Score = 43.5 bits (101), Expect(2) = 8e-12
 Identities = 16/27 (59%), Positives = 24/27 (88%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLV 86
           +QFEQHWL AQT++Q+++ND +SRR +
Sbjct: 153 IQFEQHWLEAQTDRQAIINDAMSRRTI 179


>tr|A7Q9A0|A7Q9A0_VITVI Chromosome chr19 scaffold_66, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033393001
           PE=3 SV=1
          Length = 211

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +2

Query: 74  QKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           ++A Y+A +E+AALIGAS+LQVYLLRRLF +KL  SRV
Sbjct: 174 RRAVYKAFYESAALIGASILQVYLLRRLFERKLGTSRV 211



 Score = 43.1 bits (100), Expect = 0.007
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLVTEHCLKRQPLLG----QVY 131
           +QFEQHWL AQTE+Q+ +ND ++RR V +   +   L+G    QVY
Sbjct: 151 IQFEQHWLEAQTERQARVNDAMNRRAVYKAFYESAALIGASILQVY 196


>tr|A5AV45|A5AV45_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_036211 PE=4 SV=1
          Length = 1181

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +2

Query: 74   QKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
            ++A Y+A +E+AALIGAS+LQVYLLRRLF +KL  SRV
Sbjct: 1144 RRAVYKAFYESAALIGASILQVYLLRRLFERKLGTSRV 1181


>tr|B6TE63|B6TE63_MAIZE Transmembrane emp24 domain-containing
           protein 3 OS=Zea mays PE=2 SV=1
          Length = 213

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 30/50 (60%), Positives = 37/50 (74%)
 Frame = +2

Query: 38  DRTTICFE*QFKQKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           DR  I  E    ++A ++ALFE+AALI ASV+QVYLLRRLF +KL  SRV
Sbjct: 165 DRQAILNE-NMSRRAVHKALFESAALIAASVIQVYLLRRLFERKLGTSRV 213



 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLVTEHCLKRQPLLG----QVY 131
           +QFEQHWL AQT++Q++LN+N+SRR V +   +   L+     QVY
Sbjct: 153 IQFEQHWLEAQTDRQAILNENMSRRAVHKALFESAALIAASVIQVY 198


>tr|B6SUS5|B6SUS5_MAIZE Transmembrane emp24 domain-containing
           protein 3 OS=Zea mays PE=2 SV=1
          Length = 213

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 30/50 (60%), Positives = 37/50 (74%)
 Frame = +2

Query: 38  DRTTICFE*QFKQKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           DR  I  E    ++A ++ALFE+AALI ASV+QVYLLRRLF +KL  SRV
Sbjct: 165 DRQAILNE-NMSRRAVHKALFESAALIAASVIQVYLLRRLFERKLGTSRV 213



 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLVTEHCLKRQPLLG----QVY 131
           +QFEQHWL AQT++Q++LN+N+SRR V +   +   L+     QVY
Sbjct: 153 IQFEQHWLEAQTDRQAILNENMSRRAVHKALFESAALIAASVIQVY 198


>tr|A0MAU7|A0MAU7_WHEAT Coated vesicle membrane protein-like
           OS=Triticum aestivum PE=2 SV=1
          Length = 212

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 30/50 (60%), Positives = 37/50 (74%)
 Frame = +2

Query: 38  DRTTICFE*QFKQKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           DR  I  E    ++A ++ALFE+AALI ASV+QVYLLRRLF +KL  SRV
Sbjct: 164 DRQAILNE-NMSRRAIHKALFESAALIAASVIQVYLLRRLFERKLGTSRV 212



 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLVTEHCLKRQPLLG----QVY 131
           +QFEQHWL AQT++Q++LN+N+SRR + +   +   L+     QVY
Sbjct: 152 IQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALIAASVIQVY 197


>tr|Q9S7M9|Q9S7M9_ARATH Putative coated vesicle membrane protein
           OS=Arabidopsis thaliana GN=MLP3.13 PE=2 SV=1
          Length = 208

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 30/50 (60%), Positives = 36/50 (72%)
 Frame = +2

Query: 38  DRTTICFE*QFKQKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           DR  I  E    ++A ++ALFE+ ALIGAS LQVYLLRRLF +KL  SRV
Sbjct: 160 DRQAIVNE-NMSKRAVHKALFESFALIGASFLQVYLLRRLFERKLGMSRV 208



 Score = 45.8 bits (107), Expect = 0.001
 Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 4/46 (8%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLVTEHCLKRQPLLG----QVY 131
           +QFEQHWL AQT++Q+++N+N+S+R V +   +   L+G    QVY
Sbjct: 148 IQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQVY 193


>tr|Q8L987|Q8L987_ARATH Putative coated vesicle membrane protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 208

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 30/50 (60%), Positives = 36/50 (72%)
 Frame = +2

Query: 38  DRTTICFE*QFKQKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           DR  I  E    ++A ++ALFE+ ALIGAS LQVYLLRRLF +KL  SRV
Sbjct: 160 DRQAIVNE-NMSKRAVHKALFESFALIGASFLQVYLLRRLFERKLGMSRV 208



 Score = 45.8 bits (107), Expect = 0.001
 Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 4/46 (8%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLVTEHCLKRQPLLG----QVY 131
           +QFEQHWL AQT++Q+++N+N+S+R V +   +   L+G    QVY
Sbjct: 148 IQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQVY 193


>tr|B4FE73|B4FE73_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 213

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 30/50 (60%), Positives = 37/50 (74%)
 Frame = +2

Query: 38  DRTTICFE*QFKQKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           DR  I  E    ++A ++ALFE+AALI ASV+QVYLLRRLF +KL  SRV
Sbjct: 165 DRQAILNE-NMSRRAVHKALFESAALIVASVIQVYLLRRLFERKLGTSRV 213



 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLV 86
           +QFEQHWL AQT++Q++LN+N+SRR V
Sbjct: 153 IQFEQHWLEAQTDRQAILNENMSRRAV 179


>tr|A7Q2Y1|A7Q2Y1_VITVI Chromosome chr12 scaffold_47, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029074001
           PE=3 SV=1
          Length = 214

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 28/50 (56%), Positives = 37/50 (74%)
 Frame = +2

Query: 38  DRTTICFE*QFKQKAGYRALFEAAALIGASVLQVYLLRRLFNKKLNQSRV 187
           DR  I  E    Q+A ++A+FE+ AL+GASVLQ+YLL+RLF +KL  SRV
Sbjct: 166 DRQAIVNE-GMSQRAVHKAMFESVALVGASVLQIYLLQRLFERKLGISRV 214



 Score = 42.7 bits (99), Expect = 0.009
 Identities = 17/39 (43%), Positives = 29/39 (74%)
 Frame = +3

Query: 6   VQFEQHWLYAQTEQQSVLNDNLSRRLVTEHCLKRQPLLG 122
           +QFEQHWL AQT++Q+++N+ +S+R V +   +   L+G
Sbjct: 154 IQFEQHWLEAQTDRQAIVNEGMSQRAVHKAMFESVALVG 192