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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914740
Clone id YMU001_000062_D04
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGTCATTGAAGTGTATCTTGGAAGGAGGAGCAGCACTCATCCTGGCCAGATGATTGGA
GTGCAGAGCATAAAGTGGACTATTCCTTCAAGGGGACCAGTCGTAGATCCAGGAAAGAAG
CAAGGTTTTCCTTTTTCGAAGAAATCGGAGCTCTATAAGAAAGCATATGCGATGGCTGAT
GTGCTTCGAACATCTTTGTATCAGATTGTTACAACATTCAGGAAAGAAATGGTTGTGAGC
GGGCCAGGTGGGATGGCGATAGCAGAGAGGGACTGGCTTGACAAAGGGCAGCCTCTGTAT
GGCACATGTGAGTTGCACGTGCAAATTTTGCGGTTACTGCTAGACTTCAGACTCTAGTCA
TATGAGCTCTTACAGTGGTTGATTAATTACGGAAGAACTTCCTGACTCTCAAACTACTGT
■■Homology search results ■■ -
sp_hit_id Q9K6Z4
Definition sp|Q9K6Z4|HIS5_BACHD Imidazole glycerol phosphate synthase subunit hisH OS=Bacillus halodurans
Align length 41
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914740|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_D04.
         (420 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9K6Z4|HIS5_BACHD Imidazole glycerol phosphate synthase subun...    32   1.3  
sp|Q6NBF3|HEMH_RHOPA Ferrochelatase OS=Rhodopseudomonas palustri...    31   1.7  
sp|A5CRA6|HRCA_CLAM3 Heat-inducible transcription repressor hrcA...    29   8.6  

>sp|Q9K6Z4|HIS5_BACHD Imidazole glycerol phosphate synthase subunit
           hisH OS=Bacillus halodurans GN=hisH PE=3 SV=1
          Length = 214

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 208 VTTFRKEMVVSGPGGMAIAERDWLDKGQPLYGTCELHVQIL 330
           V +F   M +    G+    +DW+D+G+PL G C L +Q+L
Sbjct: 46  VGSFHDAMSILNETGLTAFIKDWVDEGKPLLGIC-LGMQLL 85


>sp|Q6NBF3|HEMH_RHOPA Ferrochelatase OS=Rhodopseudomonas palustris
           GN=hemH PE=3 SV=1
          Length = 345

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
 Frame = +1

Query: 154 YKKAYAMADVLRTSLYQIVT--TFRKEMVVSGPGGMAIAERDWLDKGQPLYGTCELHVQI 327
           Y +  A  D L TS+   +   TF  E++V+   GM  A   ++DKG P    C   V+ 
Sbjct: 182 YYRDSAYIDALATSIKSHLASLTFEPELIVASFHGMPQA---YIDKGDPYQAQCVATVEA 238

Query: 328 LR---------LLLDFRL*SYELLQWLINY 390
           LR         LLL F+   +   QWL  Y
Sbjct: 239 LRERMGVADDKLLLTFQS-RFGFDQWLQPY 267


>sp|A5CRA6|HRCA_CLAM3 Heat-inducible transcription repressor hrcA
           OS=Clavibacter michiganensis subsp. michiganensis
           (strain NCPPB 382) GN=hrcA PE=3 SV=1
          Length = 340

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 169 AMADVLRTSLYQIVTTFRKE-MVVSGPGGMAIAERDWLDKGQPLYGTCELHVQILRLL 339
           A A VL  +L + V   R+E ++++G   +A  ERD+     P+    E  V +LRLL
Sbjct: 209 AAASVLAGTLVEQVLANRQERLLLAGSANLARTERDFPGSISPVLEAIEEQVVLLRLL 266
tr_hit_id A9U0P8
Definition tr|A9U0P8|A9U0P8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 120
Score (bit) 132.0
E-value 7.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914740|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_D04.
         (420 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U0P8|A9U0P8_PHYPA Predicted protein OS=Physcomitrella paten...   132   7e-30
tr|A7QTZ4|A7QTZ4_VITVI Chromosome undetermined scaffold_174, who...    92   2e-17
tr|Q2M5C6|Q2M5C6_BRAJU Putative uncharacterized protein (Fragmen...    80   5e-14
tr|Q60D06|Q60D06_SOLDE Putative uncharacterized protein OS=Solan...    75   2e-12
tr|Q9CAT8|Q9CAT8_ARATH Putative uncharacterized protein T18K17.9...    72   1e-11
tr|Q8LAF4|Q8LAF4_ARATH Putative uncharacterized protein OS=Arabi...    72   1e-11
tr|Q8L628|Q8L628_ARATH Putative uncharacterized protein At1g7324...    71   3e-11
tr|B6U818|B6U818_MAIZE Putative uncharacterized protein OS=Zea m...    70   7e-11
tr|A2X8D7|A2X8D7_ORYSI Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|Q6ETZ8|Q6ETZ8_ORYSJ Os02g0684300 protein OS=Oryza sativa subs...    68   2e-10
tr|A3AA67|A3AA67_ORYSJ Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|B3T351|B3T351_9ZZZZ Putative uncharacterized protein OS=uncul...    36   1.1  
tr|A4QWF3|A4QWF3_MAGGR Putative uncharacterized protein OS=Magna...    35   2.4  
tr|Q3KGA7|Q3KGA7_PSEPF Putative uncharacterized protein OS=Pseud...    34   4.1  
tr|Q1YF26|Q1YF26_MOBAS Penicillin-insensitive murein endopeptida...    33   7.0  

>tr|A9U0P8|A9U0P8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_153935 PE=4 SV=1
          Length = 534

 Score =  132 bits (333), Expect = 7e-30
 Identities = 65/120 (54%), Positives = 88/120 (73%), Gaps = 2/120 (1%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTHPGQMIGVQSIKWTIPSRGPVVDPGKKQGFPFSKKSELYKKAYAMAD 180
           LV+EVYLGRRSS      +G  SIKWT+PS+G V D  K++G PF K S ++KKAYA+AD
Sbjct: 414 LVVEVYLGRRSSARGVGFVGPNSIKWTVPSQGVVADVVKRKGSPFGKGSSMHKKAYALAD 473

Query: 181 VLRTSLYQIVTTFRKEMVVSGPG--GMAIAERDWLDKGQPLYGTCELHVQILRLLLDFRL 354
           +LRTS+YQI+  F +E++V      G+AIAERDWL +  PLYG+ E+H+Q L L L++R+
Sbjct: 474 ILRTSIYQIIAVFGEEIMVGSISNKGLAIAERDWLSQTTPLYGSHEMHLQKLGLFLEYRV 533


>tr|A7QTZ4|A7QTZ4_VITVI Chromosome undetermined scaffold_174, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00006605001 PE=4 SV=1
          Length = 530

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 54/122 (44%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTH-PGQMIGVQSIKW----TIPSRGPVVDPGKKQGFPFSKKSELYKKA 165
           L +E +LG+++S   P  ++G   IKW    T  S       GKK+GFP      L+ +A
Sbjct: 415 LAVETFLGKKTSLQSPNALMGPAGIKWATVTTARSDAATSVVGKKRGFP------LHSQA 468

Query: 166 YAMADVLRTSLYQIVTTFRKEMVVSGPGGMAIAERDWLDKGQPLYGTCELHVQILRLLLD 345
           YA+ADVLRTS+Y IV+ F +EM+     G  + E+DW+  G+PLYGT EL +Q L L LD
Sbjct: 469 YAIADVLRTSIYCIVSVFHEEMLTGAKAG--LLEKDWIIGGKPLYGTRELLLQKLHLFLD 526

Query: 346 FR 351
           FR
Sbjct: 527 FR 528


>tr|Q2M5C6|Q2M5C6_BRAJU Putative uncharacterized protein (Fragment)
           OS=Brassica juncea PE=2 SV=1
          Length = 132

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTH-PGQMIGVQSIKWTIPSRGPVVDPGKKQGFPFSKKS-ELYKKAYAM 174
           L +E ++G++++   P Q++G  SIKW   S        +K   P  K+S  LY  AYA+
Sbjct: 21  LAVETFMGKKNNLQSPQQLLGPASIKWATSSMV------RKDVKPIKKRSGALYSYAYAV 74

Query: 175 ADVLRTSLYQIVTTFRKEMVVSGPGGMAIAERDWLDKGQPLYGTCELHVQILRLLLDFR 351
           +DVLR S+YQI +TFR EMV S      I  RDW+   +P++GT E+ +Q L+L L+F+
Sbjct: 75  SDVLRVSMYQIDSTFRDEMVSS--DRTEILGRDWIGSKKPVFGTSEMLLQKLKLFLEFQ 131


>tr|Q60D06|Q60D06_SOLDE Putative uncharacterized protein OS=Solanum
           demissum GN=SDM1_56t00017 PE=4 SV=1
          Length = 612

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTHPGQ-MIGVQSIKWTIPSRG----PVVDPGKKQGFPFSKKSELYKKA 165
           L +E  +G++++      ++    IKW   + G         G+++G PF      Y KA
Sbjct: 497 LAVETLMGKKTNLQSSNTLMDPAGIKWATLNPGRRDSAAGMAGRRKGSPF------YAKA 550

Query: 166 YAMADVLRTSLYQIVTTFRKEMVVSGPGGMAIAERDWLDKGQPLYGTCELHVQILRLLLD 345
           Y+MAD+L+TS+Y IV+ F  EM  S   G  + E+DW+   +PLYGT EL  Q LRL LD
Sbjct: 551 YSMADILKTSIYGIVSAFYDEMSHSAKAG--LLEKDWIISSKPLYGTRELLSQKLRLFLD 608

Query: 346 FR 351
           F+
Sbjct: 609 FQ 610


>tr|Q9CAT8|Q9CAT8_ARATH Putative uncharacterized protein T18K17.9
           OS=Arabidopsis thaliana GN=T18K17.9 PE=4 SV=1
          Length = 501

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTH-PGQMIGVQSIKWTIPSRGPVVDPGKKQGFPFSKK-SELYKKAYAM 174
           L IE ++G++++   P Q++G  SIKW   S        +K   P  +    +Y  AYA 
Sbjct: 390 LAIETFMGKKTNLQSPQQLMGPASIKWATSSMV------RKDVKPIKRSIGAMYAYAYAA 443

Query: 175 ADVLRTSLYQIVTTFRKEMVVSGPGGMAIAERDWLDKGQPLYGTCELHVQILRLLLDFR 351
            DVLR S+YQI++TFR EM+ S   G  +  RDW+   +P +GT ++ +Q L+L L+F+
Sbjct: 444 TDVLRISVYQILSTFRDEMLNSDRAG--LLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQ 500


>tr|Q8LAF4|Q8LAF4_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 519

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTH-PGQMIGVQSIKWTIPSRGPVVDPGKKQGFPFSKK-SELYKKAYAM 174
           L IE ++G++++   P Q++G  SIKW   S        +K   P  +    +Y  AYA 
Sbjct: 408 LAIETFMGKKTNLQSPQQLMGPASIKWATSSMV------RKDVKPIKRSIGAMYAYAYAA 461

Query: 175 ADVLRTSLYQIVTTFRKEMVVSGPGGMAIAERDWLDKGQPLYGTCELHVQILRLLLDFR 351
            DVLR S+YQI++TFR EM+ S   G  +  RDW+   +P +GT ++ +Q L+L L+F+
Sbjct: 462 TDVLRISVYQILSTFRDEMLNSDRAG--LLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQ 518


>tr|Q8L628|Q8L628_ARATH Putative uncharacterized protein At1g73240
           OS=Arabidopsis thaliana GN=At1g73240 PE=2 SV=1
          Length = 519

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTH-PGQMIGVQSIKWTIPSRGPVVDPGKKQGFPFSKK-SELYKKAYAM 174
           L I+ ++G++++   P Q++G  SIKW   S        +K   P  +    +Y  AYA 
Sbjct: 408 LAIKTFMGKKTNLQSPQQLMGPASIKWATSSMV------RKDVKPIKRSIGAMYAYAYAA 461

Query: 175 ADVLRTSLYQIVTTFRKEMVVSGPGGMAIAERDWLDKGQPLYGTCELHVQILRLLLDFR 351
            DVLR S+YQI++TFR EM+ S   G  +  RDW+   +P +GT ++ +Q L+L L+F+
Sbjct: 462 TDVLRISVYQILSTFRDEMLNSDRAG--LLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQ 518


>tr|B6U818|B6U818_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 503

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTHPGQMIGVQSIKWTIPSRGPVVDPGKKQGFPFSKKSELYKKAYAMAD 180
           + IE  LG++++  P   +G ++I+W   S G     G       ++K  L+KKAY MAD
Sbjct: 389 VAIETCLGKKTNPQPVHSLGPENIRWVNFSTGR---KGTGVAIACTQKGGLHKKAYTMAD 445

Query: 181 VLRTSLYQIVTTFRKEMVVSG-PGGMAIAERDWLDKG-QPLYGTCELHVQILRLLLDFR 351
           VLRTS+YQIV+ F  ++  +  P  +   E++W+ +G +P+YG+  + VQ L L +++R
Sbjct: 446 VLRTSVYQIVSAFIDDLRANAKPSSL---EKNWISEGRKPVYGSQAVLVQKLILFIEYR 501


>tr|A2X8D7|A2X8D7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08495 PE=4 SV=1
          Length = 513

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTHPGQMIGVQSIKWTIPSRGPVVDPGKKQGFPFSKKSELYKKAYAMAD 180
           + +E  LG++++  P   +G  SIKW   S G     G       +++  L+ KA++MAD
Sbjct: 399 VAVEACLGKKTNPQPAHSLGPASIKWANFSTGR---KGNVTAIASTQRGGLHTKAFSMAD 455

Query: 181 VLRTSLYQIVTTFRKEMVVSGPGGMAIAERDWLDKG-QPLYGTCELHVQILRLLLDFR 351
           VLRTS+YQ+V+ F  +M  +     +  E++W+ +G +P++G+  + VQ L L +++R
Sbjct: 456 VLRTSIYQMVSAFEHDMRANAKA--SSLEKNWISEGRKPVFGSQAVLVQKLSLFIEYR 511


>tr|Q6ETZ8|Q6ETZ8_ORYSJ Os02g0684300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1212_A08.12 PE=4 SV=1
          Length = 237

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
 Frame = +1

Query: 1   LVIEVYLGRRSSTHPGQMIGVQSIKWTIPSRGPVVDPGKKQGFPFSKKSELYKKAYAMAD 180
           + +E  LG++++  P   +G  SIKW   S G     G       +++  L+ KA++MAD
Sbjct: 123 VAVEACLGKKTNPQPAHSLGPASIKWANFSTGR---KGNVTAIASTQRGGLHTKAFSMAD 179

Query: 181 VLRTSLYQIVTTFRKEMVVSGPGGMAIAERDWLDKG-QPLYGTCELHVQILRLLLDFR 351
           V+RTS+YQ+V+ F  +M  +     +  E++W+ +G +P++G+  + VQ L L +++R
Sbjct: 180 VIRTSIYQMVSAFEHDMRANAKA--SSLEKNWISEGRKPVFGSQAVLVQKLSLFIEYR 235