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NBDC - LSDB Archive
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BP914750
Clone id YMU001_000062_E02
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGGCTGTCTTCATTAACACATCTCCACATTGTGCATCCAACCCGGGCTCCCCTCGTTTGA
TTATCTGTCTACCAATCTCTGGCGGAAATTGTCGATGCGGCATGCTTTGAATGGCATGGG
CAGGTTGTGATGCTGAACTTGCATCCTCGTTACCTAACGGCCCTATGCCCAGCCTTAGCT
CTATATCTCCGCATTCCAGTCCCTTGTCCTCTGCATCACACTCATCACATGCTGTAGAAT
AGGCTAATTGAGTGTTTTGTACCGGGGACGAGTCGGATGTCTTTGATAGCCCTAAGTAAT
CGTGTTCAGTCAAAGCAGAATTGGAAGGAGTAAGGCAGTTAGCCCTGCTTTCCACTTCCT
TTTTTTTGTTGGAGACACTAACTGGCCATGCATCATCATGATCCGCCTTGCTCAACATGC
TCTTTTCTCAAATGCCCTCAACTTATAATTTTCAGACCACTATATGATATTGCTTGCGCA
GCTTCGACCTACCTGCACAACT
■■Homology search results ■■ -
sp_hit_id Q9V3Q6
Definition sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kinase 7 OS=Drosophila melanogaster
Align length 56
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914750|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_E02.
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kin...    32   1.6  
sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor ...    32   2.0  
sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type recepto...    32   2.0  
sp|Q6BQ02|DRE2_DEBHA Protein DRE2 OS=Debaryomyces hansenii GN=DR...    31   2.7  
sp|O14234|CCH1_SCHPO Calcium-channel protein cch1 OS=Schizosacch...    30   4.5  
sp|A4J5Y2|SYP_DESRM Prolyl-tRNA synthetase OS=Desulfotomaculum r...    30   5.9  
sp|Q9UHK0|NUFP1_HUMAN Nuclear fragile X mental retardation-inter...    30   7.8  
sp|P80019|K6PF_LACDE 6-phosphofructokinase OS=Lactobacillus delb...    30   7.8  

>sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kinase
           7 OS=Drosophila melanogaster GN=Tak1 PE=2 SV=1
          Length = 678

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = -1

Query: 378 AWPVSVSNKKKEVESRANCLTPSNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACD 211
           A P S+S+++ E+   +  LTP+ +A    + + +SKT+ SS  +NT    ST+ D
Sbjct: 301 AQPDSLSSQEGELSPSSTQLTPTTAANANVNAIAISKTTTSSMTENTS---STSSD 353


>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3
            OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1
          Length = 3313

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -1

Query: 243  NTQLAYSTACDECDAEDKGLECGDIELRLGIGPLGNEDASSASQPAHAIQS 91
            N  L+Y  A  EC+A    L+    E RLG+    N+DA++ +QP  A+ S
Sbjct: 2945 NDLLSYWPALGECEAAPCALQAWGSERRLGLD--SNKDAANNNQPELALTS 2993


>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3
            OS=Mus musculus GN=Celsr3 PE=2 SV=1
          Length = 3301

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -1

Query: 243  NTQLAYSTACDECDAEDKGLECGDIELRLGIGPLGNEDASSASQPAHAIQS 91
            N  L+Y  A  EC+A    L+    E RLG+    N+DA++ +QP  A+ S
Sbjct: 2937 NDLLSYWPALGECEAAPCALQAWGSERRLGLD--SNKDAANNNQPELALTS 2985


>sp|Q6BQ02|DRE2_DEBHA Protein DRE2 OS=Debaryomyces hansenii GN=DRE2
           PE=3 SV=2
          Length = 339

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
 Frame = -1

Query: 369 VSVSNKKKEVE---SRANCLTPSNSALTEHDYLGLSKTSDSSP------------VQNTQ 235
           VS+  KKKEV    +   CL       + H  +GL+ TS S+             +Q T+
Sbjct: 125 VSIPLKKKEVAVGGASKQCLPSFKKLSSTHAAVGLTDTSASNTDEENDDVNSKRKLQETK 184

Query: 234 LAYSTACDECDAEDK 190
           LAY +  D+ D ED+
Sbjct: 185 LAYFSESDDEDEEDQ 199


>sp|O14234|CCH1_SCHPO Calcium-channel protein cch1
           OS=Schizosaccharomyces pombe GN=cch1 PE=2 SV=1
          Length = 1854

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -1

Query: 387 HDDAWPVSVSNKKKEVESRANCLTPSNSALTEHDYLGLSKTSDSSP--VQNTQLAYSTAC 214
           HDD++  +V+  +  V    + ++ ++  +  H+ LG+++T D     +   QLAY T  
Sbjct: 46  HDDSYLDNVNPFEYNVADDEDTISMTSDGVEFHN-LGITETVDEQDKILSELQLAYPTVS 104

Query: 213 DECDAEDKGLECGD 172
              +  DKGL  GD
Sbjct: 105 RYSETLDKGLLNGD 118


>sp|A4J5Y2|SYP_DESRM Prolyl-tRNA synthetase OS=Desulfotomaculum
           reducens (strain MI-1) GN=proS PE=3 SV=1
          Length = 569

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 189 GLECGDIELRLGIGPLGNEDASSASQPAHAIQSMPHRQFPPEIGRQI--IKRGEP 31
           GLE   I   + +  L N    +  Q AH I   P R F PEI   I  +K GEP
Sbjct: 338 GLENIRIVADMEVMALVNAVVGANKQDAHLINVNPKRDFQPEIVEDIRMVKAGEP 392


>sp|Q9UHK0|NUFP1_HUMAN Nuclear fragile X mental
           retardation-interacting protein 1 OS=Homo sapiens
           GN=NUFIP1 PE=1 SV=2
          Length = 495

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 147 PLGNEDASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLDAQ 16
           P      SS SQP    QS+P    PP    QI+   +P  DAQ
Sbjct: 55  PAAGSKPSSESQPPMEAQSLPGA--PPPFDAQILPGAQPPFDAQ 96


>sp|P80019|K6PF_LACDE 6-phosphofructokinase OS=Lactobacillus
           delbrueckii subsp. bulgaricus GN=pfkA PE=1 SV=2
          Length = 319

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 21/71 (29%)
 Frame = -1

Query: 300 LTEHDY--LGLSKTSDSS-PVQNTQLAYSTAC-DECDAEDK-----------------GL 184
           LT H +  +GL  T D+  P  +  + Y TAC    DA DK                 G 
Sbjct: 112 LTRHGFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHRVFIVNVMGR 171

Query: 183 ECGDIELRLGI 151
            CGDI +R+G+
Sbjct: 172 NCGDIAMRVGV 182
tr_hit_id B6QJW2
Definition tr|B6QJW2|B6QJW2_PENMA Putative uncharacterized protein OS=Penicillium marneffei ATCC 18224
Align length 103
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914750|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_E02.
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6QJW2|B6QJW2_PENMA Putative uncharacterized protein OS=Penic...    35   1.9  
tr|A7PCC5|A7PCC5_VITVI Chromosome chr2 scaffold_11, whole genome...    35   2.4  
tr|Q18K73|Q18K73_HALWD Probable formate/nitrite transport protei...    35   2.4  
tr|B6M9Y2|B6M9Y2_BRAFL Putative uncharacterized protein OS=Branc...    34   3.2  
tr|Q948Q1|Q948Q1_PHYPA IAA/AUX protein OS=Physcomitrella patens ...    34   4.2  
tr|A9T8J7|A9T8J7_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|Q1R110|Q1R110_CHRSD Alpha,alpha-trehalose-phosphate synthase ...    33   5.5  
tr|B8CV13|B8CV13_9GAMM Methyl-accepting chemotaxis protein OS=Sh...    33   5.5  
tr|B1KQ97|B1KQ97_SHEWM AAA ATPase OS=Shewanella woodyi (strain A...    33   5.5  
tr|A9IUG6|A9IUG6_BORPD Putative dicarboxylic acid hydrolase OS=B...    33   5.5  
tr|Q5ZE24|Q5ZE24_ORYSJ Endonuclease/exonuclease/phosphatase fami...    33   9.3  
tr|B8ABL5|B8ABL5_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.3  
tr|A2ZVB0|A2ZVB0_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.3  
tr|A4RK34|A4RK34_MAGGR Putative uncharacterized protein OS=Magna...    33   9.3  

>tr|B6QJW2|B6QJW2_PENMA Putative uncharacterized protein
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_101070 PE=4
           SV=1
          Length = 233

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
 Frame = -1

Query: 312 SNSALTEHDYLG-----LSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDIELRLGIG 148
           + S++  HDY       + +T+DS+P  + +LA      E +   +G   G ++L  GI 
Sbjct: 53  TGSSVRGHDYSEAPQKLIHRTADSNPSSDEKLAQRRQKHEQETSPEGKR-GHVDLEDGIE 111

Query: 147 PLGNE-DASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLD 22
               E D + A +  H+ +S PH++F P +    +    PG +
Sbjct: 112 QQPREGDIAHAVEDNHS-ESAPHQRFQPGVHAGAVGTSTPGFE 153


>tr|A7PCC5|A7PCC5_VITVI Chromosome chr2 scaffold_11, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00015806001
            PE=4 SV=1
          Length = 989

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
 Frame = -1

Query: 342  VESRANCLTPSNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGL--ECGDI 169
            V+ R N + PS       D +   + + +S    T     TAC+ CD  +KG+   C +I
Sbjct: 738  VDDRPNSIGPSPKGKFRTDVVTTKEHTAASGGFTTSTPALTACENCDGSNKGIWKRCSEI 797

Query: 168  ELRLGIGPLGNEDASSASQPAHAIQSMPHR--QFPPEI---GRQIIKRGEPGLDAQCGDV 4
               +     GN  A  +  P  A  S   R  + PP      R   +R   G  +  GD 
Sbjct: 798  RYLISGIIRGNASALGSYTPPVAAGSGKRRFSEMPPHTTYRDRAAERRSLYGSSSSTGDS 857

Query: 3    L 1
            L
Sbjct: 858  L 858


>tr|Q18K73|Q18K73_HALWD Probable formate/nitrite transport protein
           OS=Haloquadratum walsbyi (strain DSM 16790) GN=focA PE=4
           SV=1
          Length = 602

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 237 QLAYSTACDECDAEDKGLECGDIELRLGIGPLGNEDASSASQPAHAIQ 94
           +L     CD   A D+GL+C D+ L      +G  DA+ A++ AHA+Q
Sbjct: 444 ELTNRLPCDFLIANDRGLDCSDVLL----PTVGGPDAALAAETAHALQ 487


>tr|B6M9Y2|B6M9Y2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_79909 PE=4 SV=1
          Length = 1143

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = -1

Query: 354 KKKEVESRANCLTPSNSALTEHDY--LGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLE 181
           K+  V+S+A+      S ++  D   L  +  +  SP Q      S + D+ D E   L 
Sbjct: 437 KQARVKSKADLDASGQSTISSADLQELDFAFQTYDSPEQP-----SLSVDDSDLEQPSLS 491

Query: 180 CGDIELRLGIGPLGNEDASSASQPAHAIQSMP 85
             D +L LG+ PL  ED  +       + S+P
Sbjct: 492 VDDSDLDLGVMPLSEEDTDTTKPIIEVLNSIP 523


>tr|Q948Q1|Q948Q1_PHYPA IAA/AUX protein OS=Physcomitrella patens
           GN=PpIAA1b PE=2 SV=1
          Length = 503

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
 Frame = -1

Query: 312 SNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDIELRLG----IGP 145
           S S L EHDY GLS+ S S+     Q       ++C  E+  L      L+LG    + P
Sbjct: 57  SGSTLKEHDYFGLSEVSSSNSSSGKQ------PEKCCREELNLNESATTLQLGPPAAVKP 110

Query: 144 LGNEDASS-----------ASQPAHAIQ 94
            G+ D +            A +PAH +Q
Sbjct: 111 SGHADGADAHDEGAGPENPAKRPAHHMQ 138


>tr|A9T8J7|A9T8J7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_219923 PE=4 SV=1
          Length = 503

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
 Frame = -1

Query: 312 SNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDIELRLG----IGP 145
           S S L EHDY GLS+ S S+     Q       ++C  E+  L      L+LG    + P
Sbjct: 57  SGSTLKEHDYFGLSEVSSSNSSSGKQ------PEKCCREELNLNESATTLQLGPPAAVKP 110

Query: 144 LGNEDASS-----------ASQPAHAIQ 94
            G+ D +            A +PAH +Q
Sbjct: 111 SGHADGADAHDEGAGPENPAKRPAHHMQ 138


>tr|Q1R110|Q1R110_CHRSD Alpha,alpha-trehalose-phosphate synthase
           (UDP-forming) OS=Chromohalobacter salexigens (strain DSM
           3043 / ATCC BAA-138 / NCIMB 13768) GN=Csal_0234 PE=4
           SV=1
          Length = 458

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -1

Query: 195 DKGLECGDIELRLGIGPLGNEDASSASQPAHAIQSMPHRQFPPEIGRQIIKRGEPGLDAQ 16
           D  ++C    LR G+ P+G +   + ++  HAI   P  QF  ++G++ +  G   LD  
Sbjct: 210 DNVIDCLGHRLRTGVYPVGIDVDEAIAEAEHAITQAPACQFQADLGKRDLIIGADRLDYS 269

Query: 15  CG 10
            G
Sbjct: 270 KG 271


>tr|B8CV13|B8CV13_9GAMM Methyl-accepting chemotaxis protein
           OS=Shewanella piezotolerans WP3 GN=swp_4867 PE=4 SV=1
          Length = 623

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 29/93 (31%), Positives = 46/93 (49%)
 Frame = -1

Query: 429 VEGI*EKSMLSKADHDDAWPVSVSNKKKEVESRANCLTPSNSALTEHDYLGLSKTSDSSP 250
           V+GI E ++L K      W V+ S + +  E  +     SNS L +  YL    T+ +S 
Sbjct: 529 VQGIEETTLLQKQRAQSLWQVAQSVQSQASEMASTAKQGSNSTLEQVSYLDDFITAMNS- 587

Query: 249 VQNTQLAYSTACDECDAEDKGLECGDIELRLGI 151
           ++N   A S   +E  A++  L   +IE+ LGI
Sbjct: 588 LKNHAQAASQQSEEI-AKEVELSVENIEVSLGI 619


>tr|B1KQ97|B1KQ97_SHEWM AAA ATPase OS=Shewanella woodyi (strain ATCC
           51908 / MS32) GN=Swoo_0454 PE=4 SV=1
          Length = 606

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +3

Query: 51  SVYQSLAEIVDAACFEWHGQVVMLNLHPRYLTALCPALALYL-----RIPVPCPLHHTHH 215
           S+ + + EIV+    + HG  V+L+ H     A  PA ALY      +IP  C LH +  
Sbjct: 298 SMSKLMLEIVEEEIVQKHGIPVLLSTHSPTTIACTPANALYKITAAEKIPTQCDLHDSMR 357

Query: 216 ML 221
           +L
Sbjct: 358 IL 359


>tr|A9IUG6|A9IUG6_BORPD Putative dicarboxylic acid hydrolase
           OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
           CCUG 43448) GN=Bpet3199 PE=4 SV=1
          Length = 297

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/40 (47%), Positives = 21/40 (52%)
 Frame = +3

Query: 99  WHGQVVMLNLHPRYLTALCPALALYLRIPVPCPLHHTHHM 218
           WH Q +M     R L AL P LA   R+PVPC   H  HM
Sbjct: 156 WHAQFLM---DVRQLPALMPRLA---RLPVPCVFDHMGHM 189