BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914754|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_E06.
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-depen...    32   1.8  
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-r...    32   2.3  
sp|Q6C1V6|CWC25_YARLI Pre-mRNA-splicing factor CWC25 OS=Yarrowia...    32   2.3  
sp|Q4P0P3|MED14_USTMA Mediator of RNA polymerase II transcriptio...    32   3.0  
sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35...    31   5.1  
sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa O...    30   8.7  

>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor
           ATP-dependent RNA helicase mog-5 OS=Caenorhabditis
           elegans GN=mog-5 PE=2 SV=1
          Length = 1200

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 562 KNRSRSQVADEDDDPRLRSREDDYGRKRRIRERD 461
           + R RS+  D D   R RSRED   R RR R+RD
Sbjct: 166 RKRRRSRSGDRDRRRRSRSREDRRDRDRRDRDRD 199


>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich
           7 OS=Caenorhabditis elegans GN=rsp-7 PE=2 SV=3
          Length = 452

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 22/40 (55%), Positives = 23/40 (57%)
 Frame = -3

Query: 580 DRERIIKNRSRSQVADEDDDPRLRSREDDYGRKRRIRERD 461
           DR R    RSRS+  D D D R RSR  D  RKRR R RD
Sbjct: 302 DRRRSRDRRSRSRDRDRDRD-RKRSRSRD--RKRRSRSRD 338


>sp|Q6C1V6|CWC25_YARLI Pre-mRNA-splicing factor CWC25 OS=Yarrowia
           lipolytica GN=CWC25 PE=3 SV=1
          Length = 561

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -3

Query: 574 ERIIKNRSRSQVADEDDDPRLRSREDDYG 488
           ER +++RSRS+  D D D R RSRE D G
Sbjct: 328 ERSLRDRSRSRDPDRDRDYRSRSRERDSG 356


>sp|Q4P0P3|MED14_USTMA Mediator of RNA polymerase II transcription
            subunit 14 OS=Ustilago maydis GN=RGR1 PE=3 SV=1
          Length = 1439

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +2

Query: 107  SNRLSRSTACPLQKRE*TL*VRKISLYGDFELVAKAAENPQAFT-------LFACRSSLT 265
            SN +  S  C  Q+R+ T   R   L+G+      A+ + +AF        + A   SL 
Sbjct: 917  SNTMRSSPPCKRQRRQQTADARDDGLFGEDASGGTASSDDEAFAGPAGVAGVAALVPSLC 976

Query: 266  ATSAVVTGPSKHHFSR 313
              S  V GPSK H ++
Sbjct: 977  LRSIDVLGPSKSHLAK 992


>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35
           kDa protein OS=Mus musculus GN=Snrnp35 PE=2 SV=1
          Length = 244

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 577 RERIIKNRSRSQVADEDDDPRLRSREDDYGRKRRIRER 464
           RE   + R RS+  D   DPR R R+ D GR++  +ER
Sbjct: 177 REGKRERRERSRSRDRHWDPRPRERDHDRGREKHWQER 214


>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa
           OS=Xenopus laevis GN=snrnp70 PE=2 SV=1
          Length = 471

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 580 DRERIIKNRSRSQVADEDDDPRLRSREDDYGRKRRIRERD 461
           DRER    R RS+  +++   R RSR  +  RK R RE++
Sbjct: 226 DRERERDRRERSREREKEPRERRRSRSRERRRKSRSREKE 265

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914754|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_E06.
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7X9D7|Q7X9D7_MARQU ABRH23 (Fragment) OS=Marsilea quadrifolia...    54   6e-06
tr|Q9SAF2|Q9SAF2_ARATH F3F19.21 protein (Putative uncharacterize...    35   4.0  
tr|A7P459|A7P459_VITVI Chromosome chr1 scaffold_5, whole genome ...    33   8.8  
tr|A5AK71|A5AK71_VITVI Putative uncharacterized protein OS=Vitis...    33   8.8  
tr|Q2R930|Q2R930_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    33   9.0  

>tr|Q7X9D7|Q7X9D7_MARQU ABRH23 (Fragment) OS=Marsilea quadrifolia
           PE=2 SV=1
          Length = 216

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 25/42 (59%), Positives = 36/42 (85%), Gaps = 1/42 (2%)
 Frame = -3

Query: 580 DRERIIKNRSRSQ-VADEDDDPRLRSREDDYGRKRRIRERDV 458
           +RER  ++R++S+ V DE+DDPR RSR+DDYGRKRR+ +RD+
Sbjct: 174 ERERSGRSRNKSRMVEDEEDDPRQRSRDDDYGRKRRMTDRDL 215


>tr|Q9SAF2|Q9SAF2_ARATH F3F19.21 protein (Putative uncharacterized
           protein At1g13190) (Putative uncharacterized protein
           At1g13190; F3F19.21) OS=Arabidopsis thaliana
           GN=At1g13190/F3F19.21 PE=2 SV=1
          Length = 573

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 16/30 (53%), Positives = 25/30 (83%)
 Frame = -3

Query: 565 IKNRSRSQVADEDDDPRLRSREDDYGRKRR 476
           +K+RSRS++++  DD R RSR+ DYG++RR
Sbjct: 544 LKSRSRSRMSE--DDHRSRSRDADYGKRRR 571


>tr|A7P459|A7P459_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030708001
           PE=4 SV=1
          Length = 647

 Score = 33.5 bits (75), Expect = 8.8
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = -3

Query: 562 KNRSRSQVADEDDDPRLRSREDDYGRKRRI 473
           ++RSRS+ A  D+D R RSR+ DYG++RR+
Sbjct: 616 RSRSRSR-AVADEDHRSRSRDGDYGKRRRL 644


>tr|A5AK71|A5AK71_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015886 PE=4 SV=1
          Length = 168

 Score = 33.5 bits (75), Expect = 8.8
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = -3

Query: 562 KNRSRSQVADEDDDPRLRSREDDYGRKRRI 473
           ++RSRS+ A  D+D R RSR+ DYG++RR+
Sbjct: 137 RSRSRSR-AVADEDHRSRSRDGDYGKRRRL 165


>tr|Q2R930|Q2R930_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os11g10160 PE=4 SV=2
          Length = 193

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 433 MPMLSTYFKHLSLLFCAFYHNHPPWIS 513
           + M S   KHLS++FC+F+ +H  WIS
Sbjct: 75  LEMCSPSVKHLSIMFCSFFTSHRFWIS 101