| BP914756 |
| Clone id |
YMU001_000062_E08 |
| Library |
YMU01 |
| Length |
352 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000062_E08. |
| Accession |
BP914756 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
CATGTACTGTGAGACATCATTAACTTTCATGTCTCTTGCAGCTGGAGAACTTATACCTTC
AGTCCAAGAAGGAGATCGCCAGTGGGAGAGAGTTCTGACAGTGCTGGGCCGGACAGGTAA
AGCATATACCGCTGTAAATTCTGGACACGCTGCTTCACCTTGAGCCCTTTGTACAGGCTT
TGTGTCACTCAACCCATGTGGCACTTTATCGGTAATTATATCAGATGCAAAATCCTTAGT
GCTCGTAGCTTTGTGCATATCACTTCCAGAAGTAACCATGACTGCTGGGATTGGGTCCTC
TTGGTCTGTAATGAGATCAGAAGAACTGGTAGGAATCCCAGACAAATCAGAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q12U18 |
| Definition |
sp|Q12U18|PCNA_METBU DNA polymerase sliding clamp OS=Methanococcoides burtonii (strain DSM 6242) |
| Align length |
99 |
| Score (bit) |
29.6 |
| E-value |
4.8 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914756|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_E08.
(352 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12U18|PCNA_METBU DNA polymerase sliding clamp OS=Methanococc... 30 4.8
sp|P13828|MSP1_PLAYO Merozoite surface protein 1 OS=Plasmodium y... 30 4.8
sp|Q5ZIE8|MCAF1_CHICK Activating transcription factor 7-interact... 30 4.8
sp|Q7Z4V5|HDGR2_HUMAN Hepatoma-derived growth factor-related pro... 30 4.8
sp|P46593|HWP1_CANAL Hyphal wall protein 1 OS=Candida albicans G... 29 6.3
sp|P43836|SYY_HAEIN Tyrosyl-tRNA synthetase OS=Haemophilus influ... 29 8.2
sp|Q8BG26|RUSC1_MOUSE RUN and SH3 domain-containing protein 1 OS... 29 8.2
sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA domain-cont... 29 8.2
sp|A8M4B8|GLMM_SALAI Phosphoglucosamine mutase OS=Salinispora ar... 29 8.2
sp|Q8CDM1|ATAD2_MOUSE ATPase family AAA domain-containing protei... 29 8.2
>sp|Q12U18|PCNA_METBU DNA polymerase sliding clamp
OS=Methanococcoides burtonii (strain DSM 6242) GN=pcn
PE=3 SV=1
Length = 245
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -2
Query: 291 IPAVMVTSGSDMHKATSTKDFASDIITDKVPHGLSDTKPVQRAQGEAACPEFTAV--YAL 118
+PA +V +G D+ KA A++ I+D + G+ A+G+ + T +
Sbjct: 127 LPAEIVLNGKDLQKAVK----AAEKISDHMLLGVEGESFFMEAEGDTDRVKLTMTRDQLI 182
Query: 117 PVRPSTVRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
++PS VR+L S + I PA+ K N++S ++
Sbjct: 183 DIKPSQVRSLF---SLDYLSDIIKPAS---KSNEISLHL 215
>sp|P13828|MSP1_PLAYO Merozoite surface protein 1 OS=Plasmodium
yoelii yoelii GN=MSP-1 PE=3 SV=1
Length = 1772
Score = 29.6 bits (65), Expect = 4.8
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Frame = -2
Query: 312 ITDQEDPIPA-VMVTSGSDMHKATSTKDFASDIITDKVPHGLSDTKPVQRAQGEAACPEF 136
IT + + +P+ S +D +ST +S T S T P A EAA P
Sbjct: 712 ITGESEEVPSGPSAESSTDRSTQSSTSSSSSSSSTPAAAESSSATLPEAPAPAEAASPST 771
Query: 135 TAVYALPVRPSTVRTLSHWRSPSWTEGISSPA 40
A + P+T T PS ++PA
Sbjct: 772 EASEETTIPPTTQET-----QPSQAASSTTPA 798
>sp|Q5ZIE8|MCAF1_CHICK Activating transcription factor 7-interacting
protein 1 OS=Gallus gallus GN=ATF7IP PE=2 SV=1
Length = 1085
Score = 29.6 bits (65), Expect = 4.8
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -2
Query: 318 DLITDQEDPIPAVMVTSGSDMHKATSTKDFASDIITDKVPHGLSDTKP--VQRAQGEAAC 145
DL D ED V+S ++ K T A I T + L +P +Q+ +
Sbjct: 782 DLTLDDEDD-----VSSQAEAKKQNQTASTAQSIPTQPLSRPLPPLQPNPLQQTGVPTSG 836
Query: 144 PEFTAVYALPVRPSTV 97
P T ++ LP P+TV
Sbjct: 837 PSQTTIHVLPTAPTTV 852
>sp|Q7Z4V5|HDGR2_HUMAN Hepatoma-derived growth factor-related
protein 2 OS=Homo sapiens GN=HDGFRP2 PE=1 SV=1
Length = 671
Score = 29.6 bits (65), Expect = 4.8
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 327 SSSDLITDQEDPIPAVMVTSGSDMHKATSTKDFASDIITDKVPHGLSDT-KPVQRAQGEA 151
S S +D P P M S S ++S+ D SD+ K P G KP+ + +G
Sbjct: 234 SDSKADSDGAKPEPVAMARSASSSSSSSSSSD--SDVSVKKPPRGRKPAEKPLPKPRGRK 291
Query: 150 ACPE 139
PE
Sbjct: 292 PKPE 295
>sp|P46593|HWP1_CANAL Hyphal wall protein 1 OS=Candida albicans
GN=HWP1 PE=2 SV=3
Length = 634
Score = 29.3 bits (64), Expect = 6.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 342 SGIPTSSSDLITDQEDPIPAVMVTSGSDMHKATSTKDFA-SDIITDKVPHGLSDTK 178
+ +PT+SS+ T P +V VTSGS + TS A + VP ++TK
Sbjct: 242 TSVPTTSSESTTPATSPESSVPVTSGSSILATTSESSSAPATTPNTSVPTTTTETK 297
>sp|P43836|SYY_HAEIN Tyrosyl-tRNA synthetase OS=Haemophilus
influenzae GN=tyrS PE=3 SV=1
Length = 401
Score = 28.9 bits (63), Expect = 8.2
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Frame = +1
Query: 157 TLSPLYRLCVTQPMWHFIGNYIRCKILSARSFVHITSRSNHDCWDWVLLV----CNEIRR 324
TL L L + M +GNYI + F + S S+ WDW L+ NEI +
Sbjct: 214 TLPLLVGLDGEKKMSKSLGNYIGVTEAPSDMFGKVMSISDELMWDWYNLLSFRPLNEIAQ 273
Query: 325 ------TGRNPRQIR 351
G+NPR ++
Sbjct: 274 LKSEVENGKNPRDVK 288
>sp|Q8BG26|RUSC1_MOUSE RUN and SH3 domain-containing protein 1
OS=Mus musculus GN=Rusc1 PE=2 SV=2
Length = 893
Score = 28.9 bits (63), Expect = 8.2
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -2
Query: 312 ITDQEDPIPAVMVTSGSDMHKATSTKDFASDIITDKVPHGL--SDTKPVQRAQGEAACPE 139
I +Q+DP S SD ++S SD+ D+ P + D + A + + E
Sbjct: 81 IENQQDPSQEEEAVSPSDPGCSSSLSS-CSDLSPDESPVSVYSRDLPGNEDANPQPSTLE 139
Query: 138 FTAVYALPVRPSTVRTLSHWRSPSWTEGISSPAARDMKVN 19
+ A P PST S SP GISSP D+ N
Sbjct: 140 LGSPLA-PAGPSTCSPDSFCCSPDSCSGISSPPGPDLDSN 178
>sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA
domain-containing protein 2 OS=Mus musculus GN=Rprd2
PE=1 SV=1
Length = 1469
Score = 28.9 bits (63), Expect = 8.2
Identities = 26/95 (27%), Positives = 39/95 (41%)
Frame = -2
Query: 339 GIPTSSSDLITDQEDPIPAVMVTSGSDMHKATSTKDFASDIITDKVPHGLSDTKPVQRAQ 160
GIPTS S+L + + P PA + H + +I + + LS T+
Sbjct: 500 GIPTSPSNLSSGLKTPAPAT-----TPSHNPLANILSKVEITPESILSALSKTQTQSAPA 554
Query: 159 GEAACPEFTAVYALPVRPSTVRTLSHWRSPSWTEG 55
+ +V A PV S V + S SP+ T G
Sbjct: 555 LQGLSSLLQSVTANPVPASEVTSQSTTASPASTTG 589
>sp|A8M4B8|GLMM_SALAI Phosphoglucosamine mutase OS=Salinispora
arenicola (strain CNS-205) GN=glmM PE=3 SV=1
Length = 451
Score = 28.9 bits (63), Expect = 8.2
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 71 GDRQWERVLTVLGRTGKAYTAVNSGHAASP*ALCTGFVSLNPCGTLSVIISDAKSLV-LV 247
GDR VL L +G A SGH P TG L +S + + KSL L
Sbjct: 310 GDRY---VLEELRASGLALGGEQSGHIVMPAHATTGDGVLTGLHLMSRLAATGKSLAELA 366
Query: 248 ALCISLPEVTMTAGIG 295
A+ LP+V + +G
Sbjct: 367 AVVTPLPQVLINVPVG 382
>sp|Q8CDM1|ATAD2_MOUSE ATPase family AAA domain-containing protein 2
OS=Mus musculus GN=Atad2 PE=1 SV=1
Length = 1040
Score = 28.9 bits (63), Expect = 8.2
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = -2
Query: 333 PTSSSDLITDQEDPIPAVMVTSGSDMHKATSTKDFASDI--ITDKVPHGLSDTKPVQRAQ 160
P D +T + P+ V S D+HK + KD+ DI I D P R
Sbjct: 664 PDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLKDIDLICSNALEYNPDRDPGDRLI 723
Query: 159 GEAACPEFTAVYAL 118
AC YA+
Sbjct: 724 RHRACALRDTAYAI 737
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q7X8K7 |
| Definition |
tr|Q7X8K7|Q7X8K7_BRAJU CTR1-like kinase kinase kinase OS=Brassica juncea |
| Align length |
113 |
| Score (bit) |
68.6 |
| E-value |
2.0e-10 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914756|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_E08.
(352 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q7X8K7|Q7X8K7_BRAJU CTR1-like kinase kinase kinase OS=Brassic... 69 2e-10
tr|A7PH50|A7PH50_VITVI Chromosome chr17 scaffold_16, whole genom... 59 1e-07
tr|A5ATQ8|A5ATQ8_VITVI Putative uncharacterized protein OS=Vitis... 59 1e-07
tr|Q9C9U5|Q9C9U5_ARATH Putative uncharacterized protein F25P22.8... 54 3e-06
tr|Q8L625|Q8L625_ARATH Putative uncharacterized protein At1g7366... 54 3e-06
tr|Q9LMS1|Q9LMS1_ARATH T10F20.16 protein OS=Arabidopsis thaliana... 53 7e-06
tr|Q9LM32|Q9LM32_ARATH T10O22.13 OS=Arabidopsis thaliana PE=4 SV=1 53 7e-06
tr|Q8LPH3|Q8LPH3_ARATH MAP kinase, putative OS=Arabidopsis thali... 53 7e-06
tr|Q1SMZ9|Q1SMZ9_MEDTR Protein kinase OS=Medicago truncatula GN=... 50 6e-05
tr|B7RI63|B7RI63_9RHOB Fatty acid-CoA ligase OS=Roseobacter sp. ... 37 0.49
tr|B5HT57|B5HT57_9ACTO Putative uncharacterized protein OS=Strep... 35 1.4
tr|B8AKJ5|B8AKJ5_ORYSI Putative uncharacterized protein OS=Oryza... 33 5.4
tr|B1MA22|B1MA22_METRJ Putative uncharacterized protein OS=Methy... 33 7.0
tr|A7E3N0|A7E3N0_FUGRU Predicted NADPH oxidase organizer 1 (Frag... 33 9.1
tr|Q0HZU7|Q0HZU7_SHESR Peptidase S9, prolyl oligopeptidase activ... 33 9.1
tr|Q6Z2V3|Q6Z2V3_ORYSJ Os02g0743500 protein OS=Oryza sativa subs... 33 9.1
tr|Q6Z2V2|Q6Z2V2_ORYSJ Putative MAP kinase kinase kinase (Putati... 33 9.1
tr|B8AIF3|B8AIF3_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.1
tr|A9RY68|A9RY68_PHYPA Predicted protein OS=Physcomitrella paten... 33 9.1
tr|B6KTW6|B6KTW6_TOXGO Putative uncharacterized protein OS=Toxop... 33 9.1
>tr|Q7X8K7|Q7X8K7_BRAJU CTR1-like kinase kinase kinase OS=Brassica
juncea PE=2 SV=1
Length = 970
Score = 68.6 bits (166), Expect = 2e-10
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = -2
Query: 336 IPTSSSDLITDQEDPIPAVMVTSGSDMHKATSTKDFASDIITD-KVPHGLSDTKPVQRAQ 160
IP ++ L D ++P+ + H A+ST S + + P G + +
Sbjct: 344 IPADAAGLQIDYDEPVCSTSPGDNDSFHDASSTNGIESSFQENIEFPPGEHSSSTKSSKE 403
Query: 159 GEAACPEFTAVYALPVRPSTVRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
A + V L RP + + +H RSPSWTEG+SSPAAR MKV DVSQYM
Sbjct: 404 DVAKVEKAPPVQNLSSRP--IHSFTHMRSPSWTEGVSSPAARRMKVKDVSQYM 454
>tr|A7PH50|A7PH50_VITVI Chromosome chr17 scaffold_16, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00017808001
PE=4 SV=1
Length = 977
Score = 58.9 bits (141), Expect = 1e-07
Identities = 31/47 (65%), Positives = 33/47 (70%)
Frame = -2
Query: 141 EFTAVYALPVRPSTVRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
E T + ALP RPS H RSPSWTEG+SSPA R MKV DVSQYM
Sbjct: 430 EQTLLRALPSRPS--HPYMHGRSPSWTEGVSSPAVRRMKVKDVSQYM 474
>tr|A5ATQ8|A5ATQ8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_002169 PE=4 SV=1
Length = 1058
Score = 58.9 bits (141), Expect = 1e-07
Identities = 31/47 (65%), Positives = 33/47 (70%)
Frame = -2
Query: 141 EFTAVYALPVRPSTVRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
E T + ALP RPS H RSPSWTEG+SSPA R MKV DVSQYM
Sbjct: 455 EQTLLRALPSRPS--HPYMHGRSPSWTEGVSSPAVRRMKVKDVSQYM 499
>tr|Q9C9U5|Q9C9U5_ARATH Putative uncharacterized protein F25P22.8
OS=Arabidopsis thaliana GN=At1g73660 PE=4 SV=1
Length = 1030
Score = 54.3 bits (129), Expect = 3e-06
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -2
Query: 99 VRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
+ + +H RSPSWTEG+SSPAA+ MKV DVSQYM
Sbjct: 482 IHSFTHMRSPSWTEGVSSPAAQRMKVKDVSQYM 514
>tr|Q8L625|Q8L625_ARATH Putative uncharacterized protein At1g73660
OS=Arabidopsis thaliana GN=At1g73660 PE=2 SV=1
Length = 1030
Score = 54.3 bits (129), Expect = 3e-06
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -2
Query: 99 VRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
+ + +H RSPSWTEG+SSPAA+ MKV DVSQYM
Sbjct: 482 IHSFTHMRSPSWTEGVSSPAAQRMKVKDVSQYM 514
>tr|Q9LMS1|Q9LMS1_ARATH T10F20.16 protein OS=Arabidopsis thaliana
GN=T10F20.16 PE=4 SV=1
Length = 966
Score = 53.1 bits (126), Expect = 7e-06
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = -2
Query: 156 EAACPEFTAVYALPVRPSTVRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
EA + V L +P+ + +H RSPSWTEG+SSPA R MKV DVSQYM
Sbjct: 433 EAVGSQKAPVQHLSSKPT--HSFTHARSPSWTEGVSSPAGRRMKVKDVSQYM 482
>tr|Q9LM32|Q9LM32_ARATH T10O22.13 OS=Arabidopsis thaliana PE=4 SV=1
Length = 988
Score = 53.1 bits (126), Expect = 7e-06
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = -2
Query: 156 EAACPEFTAVYALPVRPSTVRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
EA + V L +P+ + +H RSPSWTEG+SSPA R MKV DVSQYM
Sbjct: 449 EAVGSQKAPVQHLSSKPT--HSFTHARSPSWTEGVSSPAGRRMKVKDVSQYM 498
>tr|Q8LPH3|Q8LPH3_ARATH MAP kinase, putative OS=Arabidopsis thaliana
GN=At1g18160 PE=2 SV=1
Length = 992
Score = 53.1 bits (126), Expect = 7e-06
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = -2
Query: 156 EAACPEFTAVYALPVRPSTVRTLSHWRSPSWTEGISSPAARDMKVNDVSQYM 1
EA + V L +P+ + +H RSPSWTEG+SSPA R MKV DVSQYM
Sbjct: 435 EAVGSQKAPVQHLSSKPT--HSFTHARSPSWTEGVSSPAGRRMKVKDVSQYM 484
>tr|Q1SMZ9|Q1SMZ9_MEDTR Protein kinase OS=Medicago truncatula
GN=MtrDRAFT_AC139526g23v2 PE=4 SV=1
Length = 1022
Score = 50.1 bits (118), Expect = 6e-05
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = -2
Query: 84 HWRSPSWTEGISSPAARDMKVNDVSQYM 1
H RSPSWTEGISSP A MKV DVSQYM
Sbjct: 458 HGRSPSWTEGISSPEAHRMKVKDVSQYM 485
>tr|B7RI63|B7RI63_9RHOB Fatty acid-CoA ligase OS=Roseobacter sp.
GAI101 GN=RGAI101_1287 PE=4 SV=1
Length = 521
Score = 37.0 bits (84), Expect = 0.49
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Frame = +2
Query: 5 YCETSLTFMSLA------AGELI-PSVQEGDR-------QWERVLTVLG--RTGKAYTAV 136
+ + SLT+ +LA A ELI V+ GDR E L + G ++G AY +
Sbjct: 25 FMDQSLTYAALADRSARLAAELIGQGVKRGDRVGILMPMSLESALAIYGILKSGAAYVPL 84
Query: 137 NSGHAASP*ALCTGFVSLNPCGTLSVIISDAKSLVLVALCISLPEVTMTAGI 292
+ L + CG +I +DAK+ L ALC LP+++ G+
Sbjct: 85 DPSAPVERLVLI-----MQQCGITHLISADAKTATLEALCERLPKLSCIVGV 131
|