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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914758
Clone id YMU001_000062_E10
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGAAGGAGGATGTGGATGCAGCAGATGAAGTTACAAGACTGCTTTGGCAGTTGACCCATC
AAATGCATACCACGCTGGAAGCTATGCCCACTTTCTCTGGAATTTGGGTGTTGACCAAGA
TGATTTGTCTACATCTAGCACAGCTTACCACGAGGCCTCTACTTCCTGACTAACTTGATT
CTCGCAGGTGTACTTTGATGACCTACTTTTATACAGGTTGACAAGCCACATCTTGTTCTG
TCCATATCGTAAATGTAACCCTGGCTGGTATAGTGCTACACTCTTAAAGAGTTGTATATC
ATACGGTTGTTGTTGAATTCAACATTGACACTTCCTAGGCCTAGTGCCAAGATTTAAACG
TGTATAGTGGGAGATGTGGAGCCAGGTTGTAGTTCCTCCAGGATTTTGCTTCGAGCATAT
TCTAGCCAGATAGGTCGTGGTTGTACTATGTATACACGCTATGGCCATTAATTGCATAGA
ATGTCGTATGCATGAGCTCACAAGTACCTTGCCTCTTAAGTGGCAATCTCTGATGTAATG
CACATTCGCGGCCGCGAATGAGTACCTGCAGGTAATATCTCAAGGGCGAATTC
■■Homology search results ■■ -
sp_hit_id Q61116
Definition sp|Q61116|ZN235_MOUSE Zinc finger protein 235 OS=Mus musculus
Align length 42
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914758|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_E10.
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61116|ZN235_MOUSE Zinc finger protein 235 OS=Mus musculus GN...    33   1.1  
sp|P53851|TEX1_YEAST Protein TEX1 OS=Saccharomyces cerevisiae GN...    33   1.1  
sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 OS=Homo sapiens GN...    32   1.8  
sp|Q14644|RASA3_HUMAN Ras GTPase-activating protein 3 OS=Homo sa...    30   9.1  

>sp|Q61116|ZN235_MOUSE Zinc finger protein 235 OS=Mus musculus
           GN=Znf235 PE=2 SV=1
          Length = 645

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 453 IHSTTTTYLARICSKQNPGGTTTWLHISHYTRLNLGTRPRKC 328
           +H+    Y   +C K    G T W H+  + R++ G +P KC
Sbjct: 334 VHTGEKPYKCEVCGK----GFTQWAHLQAHERIHTGEKPYKC 371


>sp|P53851|TEX1_YEAST Protein TEX1 OS=Saccharomyces cerevisiae
           GN=TEX1 PE=1 SV=1
          Length = 422

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 445 YNHDLSG*NMLEAKSWRNYNLAPHLPLYTFKSWH 344
           Y +DL+  N+L +KS  NY   P L  Y  KSW+
Sbjct: 320 YFYDLNSGNLLHSKSLANYKTDPVLKFYPDKSWY 353


>sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 OS=Homo sapiens
           GN=ZNF473 PE=1 SV=1
          Length = 871

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -3

Query: 525 CHLRGKVLVSSCIRHSMQLMAIACIHSTTTTYLARICSKQNPGGTTTWLHISHYTRLNLG 346
           C+ RGK       RH+  L     +HS    Y    C K     T    H++ + R++ G
Sbjct: 405 CNERGK-----SFRHNSTLKIHQRVHSGEKPYKCSECGKAFHRHT----HLNEHRRIHTG 455

Query: 345 TRPRKCQ 325
            RP KCQ
Sbjct: 456 YRPHKCQ 462


>sp|Q14644|RASA3_HUMAN Ras GTPase-activating protein 3 OS=Homo
           sapiens GN=RASA3 PE=1 SV=3
          Length = 834

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 561 SFAAANVHYIRDCH--LRGKVLVSSCIRHSMQLMAIACIHSTTTTYLARICSKQNP 400
           + A+A V   +D +   RG  L S CI  +M+L  +  +H T    +  IC    P
Sbjct: 354 AIASAEVKRTQDPNTIFRGNSLASKCIDETMKLAGMHYLHVTLKPAIEEICQSHKP 409
tr_hit_id Q688J0
Definition tr|Q688J0|Q688J0_ORYSJ Os05g0447700 protein OS=Oryza sativa subsp. japonica
Align length 27
Score (bit) 45.8
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914758|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_E10.
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q688J0|Q688J0_ORYSJ Os05g0447700 protein OS=Oryza sativa subs...    46   0.002
tr|Q5N7T3|Q5N7T3_ORYSJ Peroxidase-like protein (Os01g0855200 pro...    46   0.002
tr|B8ACG3|B8ACG3_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.002
tr|B6U0L7|B6U0L7_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.002
tr|B6SSS3|B6SSS3_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.002
tr|A2Y583|A2Y583_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.002
tr|A9U3W7|A9U3W7_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.003
tr|A9TDI7|A9TDI7_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.009
tr|A7NYI9|A7NYI9_VITVI Chromosome chr6 scaffold_3, whole genome ...    44   0.009
tr|A9T6F7|A9T6F7_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.026
tr|B7FM44|B7FM44_MEDTR Putative uncharacterized protein OS=Medic...    42   0.034
tr|Q9LNU7|Q9LNU7_ARATH F22G5.38 OS=Arabidopsis thaliana PE=4 SV=1      40   0.100
tr|Q8VZC8|Q8VZC8_ARATH At1g07280/F22G5_32 OS=Arabidopsis thalian...    40   0.100
tr|Q7MVN6|Q7MVN6_PORGI TPR domain protein OS=Porphyromonas gingi...    40   0.13 
tr|Q8GW79|Q8GW79_ARATH Putative uncharacterized protein At2g2967...    38   0.38 
tr|O82388|O82388_ARATH Expressed protein (At2g29670/T27A16.23) (...    38   0.38 
tr|Q9SD65|Q9SD65_ARATH Putative uncharacterized protein F13I12.1...    37   0.85 
tr|A7Q3D8|A7Q3D8_VITVI Chromosome chr13 scaffold_48, whole genom...    36   1.9  
tr|A5C7B4|A5C7B4_VITVI Putative uncharacterized protein OS=Vitis...    36   1.9  
tr|A9S3E2|A9S3E2_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.5  
tr|Q9SSC6|Q9SSC6_ARATH F18B13.21 protein (Putative uncharacteriz...    35   4.2  
tr|A4TUM1|A4TUM1_9PROT Putative uncharacterized protein OS=Magne...    33   9.4  

>tr|Q688J0|Q688J0_ORYSJ Os05g0447700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0012G21.7 PE=2 SV=1
          Length = 484

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNLG 109
           +Y+ A+A DP NA+HA +YAHFLWN G
Sbjct: 449 TYQEAIAADPGNAHHAAAYAHFLWNTG 475


>tr|Q5N7T3|Q5N7T3_ORYSJ Peroxidase-like protein (Os01g0855200
           protein) OS=Oryza sativa subsp. japonica GN=B1096A10.34
           PE=4 SV=1
          Length = 512

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNLGVD 115
           +Y+ A+A +PSN++HA +YAHFLWN G D
Sbjct: 477 TYQEAIAAEPSNSHHAAAYAHFLWNTGGD 505


>tr|B8ACG3|B8ACG3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04480 PE=4 SV=1
          Length = 759

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNLGVD 115
           +Y+ A+A +PSN++HA +YAHFLWN G D
Sbjct: 724 TYQEAIAAEPSNSHHAAAYAHFLWNTGGD 752


>tr|B6U0L7|B6U0L7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 499

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNLG 109
           +Y+ A+A DP NA+HA +YAHFLWN G
Sbjct: 459 AYQEAIAADPGNAHHAAAYAHFLWNTG 485


>tr|B6SSS3|B6SSS3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 512

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNLG 109
           +Y+ A+A DP NA+HA +YAHFLWN G
Sbjct: 477 TYQEAIAADPGNAHHAAAYAHFLWNTG 503


>tr|A2Y583|A2Y583_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20153 PE=4 SV=1
          Length = 484

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNLG 109
           +Y+ A+A DP NA+HA +YAHFLWN G
Sbjct: 449 TYQEAIAADPGNAHHAAAYAHFLWNTG 475


>tr|A9U3W7|A9U3W7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_155751 PE=4 SV=1
          Length = 331

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNLGVDQDDLST 133
           +YK A+A DP ++Y AGSYAHFLW+ G D D+  T
Sbjct: 295 AYKAAIAADPQSSYPAGSYAHFLWHAG-DGDNSET 328


>tr|A9TDI7|A9TDI7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169439 PE=4 SV=1
          Length = 604

 Score = 43.5 bits (101), Expect = 0.009
 Identities = 15/26 (57%), Positives = 23/26 (88%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNL 106
           +++ A A+DP+N YHAG+Y+HFLW+L
Sbjct: 563 AFRAAAALDPTNPYHAGNYSHFLWHL 588


>tr|A7NYI9|A7NYI9_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024138001
           PE=4 SV=1
          Length = 453

 Score = 43.5 bits (101), Expect = 0.009
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWNLGVD 115
           +Y  A+A DPSN Y+A +YAHFLW+ G D
Sbjct: 410 TYLEAIAADPSNTYYAANYAHFLWSTGGD 438


>tr|A9T6F7|A9T6F7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168339 PE=4 SV=1
          Length = 604

 Score = 42.0 bits (97), Expect = 0.026
 Identities = 14/25 (56%), Positives = 22/25 (88%)
 Frame = +2

Query: 29  SYKTALAVDPSNAYHAGSYAHFLWN 103
           +++ A A+DP+N YHAG+Y+HFLW+
Sbjct: 566 AFRAAAALDPANPYHAGNYSHFLWH 590