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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914761
Clone id YMU001_000062_F01
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTTCTAAAACCGGCACAACTGTATTAAATTCAAACAGTTAGACGT
GTCAATTGGTTAGTTGTTGCCGATTACACACAATATTGCCATCCTTATGTCGATGACCCT
TTGCAAACCATTGCAAATTAGCTCATGATCTCATTGCCATGGGCAATACGTACTGTAGTA
CAAGCTGCATCTTGCATAGTAGATCATGCCCAACCTACACATAATTGTAGCTTGAAGGTT
GCAAGCTGCCCTCTTCTCATTAGAAATAGCACAGTCATGCTTGTAGTTGAATTCTCCCTG
CATACAAGCCAACTGCCAATGCCACAAGCTCCAATTTCCACACCAAAACAGACCAACAAG
CTCATGAGCGCGTCAAGAATATACTAAGTTCTTGGCATTGCGAGCCATCCGGATTGATCA
TGTGAAAGGCCTCCGAGTCGGCTGATCCCACCACTCTCTCGTAATTGGCTCTCATGTAGA
TCAGCTCATCCTCTTCCTTGGAGGACTTCTCTACTCTGAAAACTCCGATTAGGTCATCTT
GTAAACGACGAGTACCTGCAGGTTATATCTCAAGGGCGAATTCG
■■Homology search results ■■ -
sp_hit_id O43043
Definition sp|O43043|SCAP_SCHPO Sterol regulatory element-binding protein cleavage-activating protein OS=Schizosaccharomyces pombe
Align length 65
Score (bit) 30.8
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914761|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F01.
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43043|SCAP_SCHPO Sterol regulatory element-binding protein c...    31   4.6  
sp|Q9V4F9|MED26_DROME Mediator of RNA polymerase II transcriptio...    30   7.9  

>sp|O43043|SCAP_SCHPO Sterol regulatory element-binding protein
           cleavage-activating protein OS=Schizosaccharomyces pombe
           GN=scp1 PE=1 SV=1
          Length = 1086

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -2

Query: 315 WSLWHWQLACMQGEFNYKHDCAIS-NEKRAACNLQATIMCRLGMIYYARCSLYY-----S 154
           W LW   +    G F Y +   +  ++ RA   L ATI  + G  Y++ CSL Y      
Sbjct: 234 WYLW---VGFGVGLFAYLYLSLVRLHDIRAKFGLTATIFIQSGTAYFSTCSLLYFFERTG 290

Query: 153 TYCPW 139
             CPW
Sbjct: 291 PICPW 295


>sp|Q9V4F9|MED26_DROME Mediator of RNA polymerase II transcription
            subunit 26 OS=Drosophila melanogaster GN=MED26 PE=1 SV=2
          Length = 1483

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 272  NSPCIQANCQCH-KLQFPHQ-NRPTSS*ARQEYTKF 373
            NSPCI AN + H KL FPH+ +R  +S  R+    +
Sbjct: 1219 NSPCISANAKLHNKLFFPHELSRDNTSGIRERLINY 1254
tr_hit_id Q9LPT9
Definition tr|Q9LPT9|Q9LPT9_ARATH T22I11.13 (Putative uncharacterized protein At1g21050/T22I11_12) OS=Arabidopsis thaliana
Align length 46
Score (bit) 68.9
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914761|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F01.
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LPT9|Q9LPT9_ARATH T22I11.13 (Putative uncharacterized prote...    69   2e-10
tr|Q8LBL9|Q8LBL9_ARATH Putative uncharacterized protein OS=Arabi...    69   2e-10
tr|Q2HIW8|Q2HIW8_ARATH At1g21050 OS=Arabidopsis thaliana PE=2 SV=1     69   2e-10
tr|Q8LB64|Q8LB64_ARATH Putative uncharacterized protein OS=Arabi...    68   3e-10
tr|Q7XJQ1|Q7XJQ1_ARATH At2g37880 protein (Putative uncharacteriz...    68   3e-10
tr|A0MES5|A0MES5_ARATH Putative uncharacterized protein (Fragmen...    68   3e-10
tr|A5B849|A5B849_VITVI Putative uncharacterized protein OS=Vitis...    65   2e-09
tr|A7QPJ7|A7QPJ7_VITVI Chromosome chr18 scaffold_137, whole geno...    65   3e-09
tr|A7PNV0|A7PNV0_VITVI Chromosome chr8 scaffold_23, whole genome...    64   4e-09
tr|B6TX93|B6TX93_MAIZE Plant-specific domain TIGR01570 family pr...    64   5e-09
tr|Q6ZFZ3|Q6ZFZ3_ORYSJ Putative uncharacterized protein OJ1311_H...    63   9e-09
tr|Q0DY83|Q0DY83_ORYSJ Os02g0709600 protein OS=Oryza sativa subs...    63   9e-09
tr|A3AAL4|A3AAL4_ORYSJ Putative uncharacterized protein OS=Oryza...    63   9e-09
tr|A9RPC1|A9RPC1_PHYPA Predicted protein (Fragment) OS=Physcomit...    63   1e-08
tr|A9TUC0|A9TUC0_PHYPA Predicted protein (Fragment) OS=Physcomit...    62   2e-08
tr|A7PWH8|A7PWH8_VITVI Chromosome chr8 scaffold_34, whole genome...    62   3e-08
tr|A9NLX4|A9NLX4_PICSI Putative uncharacterized protein OS=Picea...    61   3e-08
tr|A9RDT5|A9RDT5_PHYPA Predicted protein (Fragment) OS=Physcomit...    60   8e-08
tr|A7NTQ3|A7NTQ3_VITVI Chromosome chr18 scaffold_1, whole genome...    60   8e-08
tr|Q8LB38|Q8LB38_ARATH Putative uncharacterized protein OS=Arabi...    60   1e-07
tr|O22227|O22227_ARATH Expressed protein (Putative uncharacteriz...    60   1e-07
tr|A7P313|A7P313_VITVI Chromosome chr1 scaffold_5, whole genome ...    59   1e-07
tr|A5BQF1|A5BQF1_VITVI Putative uncharacterized protein OS=Vitis...    59   1e-07
tr|Q9FL47|Q9FL47_ARATH Gb|AAD20416.1 (Expressed protein) OS=Arab...    58   3e-07
tr|Q651K7|Q651K7_ORYSJ Os06g0495800 protein OS=Oryza sativa subs...    58   3e-07
tr|B8B2T8|B8B2T8_ORYSI Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|A7R0H8|A7R0H8_VITVI Chromosome undetermined scaffold_309, who...    58   3e-07
tr|A7PGM0|A7PGM0_VITVI Chromosome chr17 scaffold_16, whole genom...    58   3e-07
tr|A5B2F3|A5B2F3_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A3BC04|A3BC04_ORYSJ Putative uncharacterized protein OS=Oryza...    58   3e-07

>tr|Q9LPT9|Q9LPT9_ARATH T22I11.13 (Putative uncharacterized protein
           At1g21050/T22I11_12) OS=Arabidopsis thaliana
           GN=T22I11.13 PE=2 SV=1
          Length = 242

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/46 (67%), Positives = 40/46 (86%)
 Frame = -1

Query: 484 SKEEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           S+EED+++Y+RA +ERV GS+DSE+FHM+NP GS  QELSIFL RS
Sbjct: 197 SEEEDQMLYLRARFERVTGSSDSESFHMMNPGGSYGQELSIFLLRS 242


>tr|Q8LBL9|Q8LBL9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 245

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/46 (67%), Positives = 40/46 (86%)
 Frame = -1

Query: 484 SKEEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           S+EED+++Y+RA +ERV GS+DSE+FHM+NP GS  QELSIFL RS
Sbjct: 200 SEEEDQMLYLRARFERVTGSSDSESFHMMNPGGSYGQELSIFLLRS 245


>tr|Q2HIW8|Q2HIW8_ARATH At1g21050 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 245

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/46 (67%), Positives = 40/46 (86%)
 Frame = -1

Query: 484 SKEEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           S+EED+++Y+RA +ERV GS+DSE+FHM+NP GS  QELSIFL RS
Sbjct: 200 SEEEDQMLYLRARFERVTGSSDSESFHMMNPGGSYGQELSIFLLRS 245


>tr|Q8LB64|Q8LB64_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 247

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = -1

Query: 478 EEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           + DE++YMRANYE VVGS+DSE+FH+INPD +  QELSIFL R+
Sbjct: 202 DTDEVMYMRANYEHVVGSSDSESFHLINPDANSAQELSIFLLRT 245


>tr|Q7XJQ1|Q7XJQ1_ARATH At2g37880 protein (Putative uncharacterized
           protein) OS=Arabidopsis thaliana GN=At2g37880 PE=2 SV=1
          Length = 247

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = -1

Query: 478 EEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           + DE++YMRANYE VVGS+DSE+FH+INPD +  QELSIFL R+
Sbjct: 202 DTDEVMYMRANYEHVVGSSDSESFHLINPDANSAQELSIFLLRT 245


>tr|A0MES5|A0MES5_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 248

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = -1

Query: 478 EEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           + DE++YMRANYE VVGS+DSE+FH+INPD +  QELSIFL R+
Sbjct: 202 DTDEVMYMRANYEHVVGSSDSESFHLINPDANSAQELSIFLLRT 245


>tr|A5B849|A5B849_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044256 PE=4 SV=1
          Length = 223

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 34/54 (62%), Positives = 41/54 (75%)
 Frame = -1

Query: 508 GVFRVEKSSKEEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           GV  V   S + D L+Y+RA++ERV+GS DSE+FHMINP GS  QELSIFL RS
Sbjct: 171 GVLPVAPKSDDGD-LLYLRASFERVIGSQDSESFHMINPVGSSGQELSIFLLRS 223


>tr|A7QPJ7|A7QPJ7_VITVI Chromosome chr18 scaffold_137, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002966001
           PE=4 SV=1
          Length = 214

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 29/47 (61%), Positives = 39/47 (82%)
 Frame = -1

Query: 487 SSKEEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           +  ++ +L+Y+RA++ERV+GS DSE+FHMINP GS  QELSIFL RS
Sbjct: 168 AGSDDGDLLYLRASFERVIGSPDSESFHMINPVGSSGQELSIFLLRS 214


>tr|A7PNV0|A7PNV0_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021401001
           PE=4 SV=1
          Length = 407

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 32/54 (59%), Positives = 38/54 (70%)
 Frame = -1

Query: 508 GVFRVEKSSKEEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTRS 347
           GV      S  + EL+YMRANYE VVGS DSE+FH+INPD    QELS+FL R+
Sbjct: 353 GVIPAGLGSDGDGELMYMRANYECVVGSCDSESFHLINPDDCPGQELSVFLLRT 406


>tr|B6TX93|B6TX93_MAIZE Plant-specific domain TIGR01570 family
           protein OS=Zea mays PE=2 SV=1
          Length = 281

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = -1

Query: 520 DDLIGVFRVEKSSKEEDELIYMRANYERVVGSADSEAFHMINPDGSQCQELSIFLTR 350
           DD+ G   V  S   E +L+YMRA +ERVVGS DSEAF+M+NPDGS   ELSI+L R
Sbjct: 226 DDVAG--SVSGSGAAEGDLMYMRARFERVVGSRDSEAFYMMNPDGSGGPELSIYLLR 280