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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914764
Clone id YMU001_000062_F04
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCGCATTATTAGTTCCTGGTCTTCCTTGTGCTCTGCCGAAATAGTACTCGAAACCAAGTC
CTCAATCTTATTAAGTTCTGACGTGTACTCAACCTGAAATACAAGCCTTGCCAAATACCC
TCTTGTCAATGGATACCACTGTTGTTTTCCCTTGATGCTGGTATCTTTTGCTCTCAAAGA
TTGAAGCACTTCCACTTGATCTTGAGGCAAAGCACTCAAGAATGCATTTATGTCGCATTT
AAAAATATTATTACAATTCCACAGAATATCTCTTAAACTTGGCTTAACAATGGCATATTC
ATTCATTGCGTTGACTCTCCGGAGTCTTGTGAGCAGAGCAATCTCTGAAGTGCGTCGAGG
GTCAATGACAGAGCACACGACTCTCACATGGCGAGCTCTATTTTCCTTGTACATTTGTGA
TATCAACTCCATCCAAGCAGTGAGGCGATGATTACCTTCCCATACAAAAAACATTTTACC
AGACAAGAACTTGAACTCTGGTTTTGATAAGACCTCTTTCTCAAACTCAGCATCCACTTC
TCTCCACAAAGGTGACCAAGATGACTGTA
■■Homology search results ■■ -
sp_hit_id Q89AY4
Definition sp|Q89AY4|FABB_BUCBP 3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buchnera aphidicola subsp. Baizongia pistaciae
Align length 107
Score (bit) 33.5
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914764|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F04.
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89AY4|FABB_BUCBP 3-oxoacyl-[acyl-carrier-protein] synthase 1...    33   0.76 
sp|Q8K411|PREP_MOUSE Presequence protease, mitochondrial OS=Mus ...    31   4.9  
sp|Q87LF7|PYRI_VIBPA Aspartate carbamoyltransferase regulatory c...    30   6.4  
sp|A7MSE1|PYRI_VIBHB Aspartate carbamoyltransferase regulatory c...    30   6.4  
sp|Q9FFN1|PP363_ARATH Pentatricopeptide repeat-containing protei...    30   6.4  

>sp|Q89AY4|FABB_BUCBP 3-oxoacyl-[acyl-carrier-protein] synthase 1
           OS=Buchnera aphidicola subsp. Baizongia pistaciae
           GN=fabB PE=3 SV=1
          Length = 407

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 20/107 (18%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = -3

Query: 555 SPLWREVDAEFEKEVLSKPEFKFLSGKMFFVWEGNHRLTAWMELISQMYKENRARHVRVV 376
           S +W  +  +  +E + +  F+F++    + +    +     +L S+MY+ N    V + 
Sbjct: 46  SHVWGNIKLDNYQENIDRKIFRFMNDASIYSYLSMKQAIEDAKLTSKMYQNNPRVGVIIG 105

Query: 375 CSVIDPR-RTSEIALLTRLRRVNAMNEYAIVKPSLRDILWNCNNIFK 238
            S   PR + + ++++ + +R+ +++ Y ++K     I    + +FK
Sbjct: 106 SSSGSPRCQINGVSIIKKTKRLKSVSPYTVIKSMTSSISACLSTLFK 152


>sp|Q8K411|PREP_MOUSE Presequence protease, mitochondrial OS=Mus
           musculus GN=Pitrm1 PE=2 SV=1
          Length = 1036

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -3

Query: 345 EIALLTRLRRVNAMNEYAIVKPSLRDILWNCNNIFKCDINAFLSALPQDQVEVLQSLRAK 166
           ++ ++ R+  +  +       P ++  L NC+N+ +C +NA    +PQ + EV   LR  
Sbjct: 745 QVKVMKRIAEMTDIKPILRKLPRIKKYLLNCDNM-RCSVNATPQQMPQAEKEVENFLRNV 803

Query: 165 DTSIKGKQQWYP 130
             S K ++   P
Sbjct: 804 GRSKKERKPVRP 815


>sp|Q87LF7|PYRI_VIBPA Aspartate carbamoyltransferase regulatory
           chain OS=Vibrio parahaemolyticus GN=pyrI PE=3 SV=1
          Length = 153

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -3

Query: 477 KMFFVWEGNHRLTAWMELISQMYKENRARHVRVVCSVIDPRRTSEIALLTRLRRVNAMNE 298
           K+F +   + R+T  + L S          +  V   I+  + S++AL      VN +  
Sbjct: 31  KLFDMHNSSQRVTIGLNLPSSALGHKDLLKIENV--FINEEQASKLALYAPHATVNQIEN 88

Query: 297 YAIVKPSLRDILWNCNNIFKC 235
           Y +VK    ++    NN+F+C
Sbjct: 89  YEVVKKLALELPEKINNVFEC 109


>sp|A7MSE1|PYRI_VIBHB Aspartate carbamoyltransferase regulatory
           chain OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
           GN=pyrI PE=3 SV=1
          Length = 153

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -3

Query: 477 KMFFVWEGNHRLTAWMELISQMYKENRARHVRVVCSVIDPRRTSEIALLTRLRRVNAMNE 298
           K+F +   + R+T  + L S          +  V   I+  + S++AL      VN +  
Sbjct: 31  KLFDMHNSSQRVTIGLNLPSSALGHKDLLKIENV--FINEEQASKLALYAPHATVNQIEN 88

Query: 297 YAIVKPSLRDILWNCNNIFKC 235
           Y +VK    ++    NN+F+C
Sbjct: 89  YEVVKKLALELPEKVNNVFEC 109


>sp|Q9FFN1|PP363_ARATH Pentatricopeptide repeat-containing protein
           At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1
          Length = 896

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +2

Query: 254 QFHRISLKLG----LTMAYSFIALTLRSLVSRAISEVRRGSMTEHTTLTWRALFSLYICD 421
           Q H  +LK G    +++  S I++  +   S    ++   +M EH  ++W +L S YI  
Sbjct: 542 QIHCYALKAGYFSDISLGNSLISMYAKCCDSDDAIKIFN-TMREHDVISWNSLISCYILQ 600

Query: 422 INSIQAVRR*LPSHTKNILPD 484
            N  +A+      + K I PD
Sbjct: 601 RNGDEALALWSRMNEKEIKPD 621
tr_hit_id A9VCM5
Definition tr|A9VCM5|A9VCM5_MONBE Predicted protein OS=Monosiga brevicollis
Align length 77
Score (bit) 36.6
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914764|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F04.
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9VCM5|A9VCM5_MONBE Predicted protein OS=Monosiga brevicollis...    37   1.00 
tr|Q8AAJ3|Q8AAJ3_BACTN Glycoside transferase family 4 OS=Bactero...    34   6.5  
tr|Q1YWJ0|Q1YWJ0_PHOPR Aminoimidazole riboside kinase (Fragment)...    34   6.5  
tr|Q2HCU3|Q2HCU3_CHAGB Putative uncharacterized protein OS=Chaet...    34   6.5  
tr|Q8EKA6|Q8EKA6_SHEON Fibronectin type III domain protein OS=Sh...    33   8.5  
tr|Q6KH19|Q6KH19_MYCMO Expressed protein OS=Mycoplasma mobile GN...    33   8.5  
tr|Q9U904|Q9U904_DROME MRNA, , similar to human isopeptidase T-3...    33   8.5  
tr|Q8IHD7|Q8IHD7_DROME AT11570p (Fragment) OS=Drosophila melanog...    33   8.5  
tr|Q86LF0|Q86LF0_DROME Isopeptidase-T-3, isoform A OS=Drosophila...    33   8.5  
tr|B4QE55|B4QE55_DROSI GD11475 OS=Drosophila simulans GN=GD11475...    33   8.5  
tr|B4PB53|B4PB53_DROYA GE12072 OS=Drosophila yakuba GN=GE12072 P...    33   8.5  
tr|B4HPR4|B4HPR4_DROSE GM21979 OS=Drosophila sechellia GN=GM2197...    33   8.5  
tr|A1ZBP3|A1ZBP3_DROME Isopeptidase-T-3, isoform B OS=Drosophila...    33   8.5  

>tr|A9VCM5|A9VCM5_MONBE Predicted protein OS=Monosiga brevicollis
           GN=34577 PE=4 SV=1
          Length = 2254

 Score = 36.6 bits (83), Expect = 1.00
 Identities = 20/77 (25%), Positives = 42/77 (54%)
 Frame = -3

Query: 231 INAFLSALPQDQVEVLQSLRAKDTSIKGKQQWYPLTRGYLARLVFQVEYTSELNKIEDLV 52
           +N  L++ PQ Q+ + ++L+ +  S +      PLTR Y  +   ++     + ++ D++
Sbjct: 645 VNQMLNSYPQMQLPI-EALQTQLLSSETPAASRPLTRVYFRKAFERLPLPDRIARVPDML 703

Query: 51  SSTISAEHKEDQELIMR 1
            +  SA HKED  L+++
Sbjct: 704 RACPSAPHKEDGALVLK 720


>tr|Q8AAJ3|Q8AAJ3_BACTN Glycoside transferase family 4
           OS=Bacteroides thetaiotaomicron GN=BT_0471 PE=4 SV=1
          Length = 404

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
 Frame = -3

Query: 555 SPLWREVDAEFEKEVLSKPEFKFLSGKMFFVWEGNHRLTAWMELISQMYKENRARHV--- 385
           +P++++   +F  E++ K     +  + F   E  + + A    + +++ ++  +++   
Sbjct: 99  TPIYKDAYIDFVNEIIKKERIDIVQNEYF---EQLYMVYAIPNTVKKVFIQHEIQYIAKE 155

Query: 384 RVVCSVIDPRRTSEIALLTRLRRVNAMNEYAIVKPSLRDILWNCNNIFKCD-INAFLSAL 208
           R++     P     +A + R++ +NA+NEY  V  ++ DI     NI  CD + A +SA 
Sbjct: 156 RLIQQREYPSSVRYLATMQRIQEINALNEYDQV-ITMTDI---DKNILMCDGVRAPISAS 211

Query: 207 P 205
           P
Sbjct: 212 P 212


>tr|Q1YWJ0|Q1YWJ0_PHOPR Aminoimidazole riboside kinase (Fragment)
           OS=Photobacterium profundum 3TCK GN=P3TCK_15694 PE=4
           SV=1
          Length = 202

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 378 VCSVIDPRRTSEIALLTRLRRVNAMNEYAIVKPSLRDILWN 256
           VCS+      S  + LT L++V A   Y    P+LRD +WN
Sbjct: 124 VCSIALANEPSRSSTLTALKKVKAAGGYISFDPNLRDEVWN 164


>tr|Q2HCU3|Q2HCU3_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_01961 PE=4 SV=1
          Length = 456

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = -3

Query: 357 RRTSEIALLTRLRRVNAMNEYAIVKPSLRDILWNCNNIFKCDINAFLSALPQDQVEVLQS 178
           R     A++T+L     ++  +++  ++  I W+ + +FK  + AF   LP++Q  V++ 
Sbjct: 156 REVVTAAVVTQL----GIDHVSMLGDTVEKIAWHKSGVFKEGVKAFTRKLPEEQAAVMEV 211

Query: 177 LRAK 166
           LRA+
Sbjct: 212 LRAR 215


>tr|Q8EKA6|Q8EKA6_SHEON Fibronectin type III domain protein
           OS=Shewanella oneidensis GN=SO_0189 PE=4 SV=1
          Length = 2522

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +2

Query: 362 SMTEHTTLTWRALFSLYICDIN----SIQAVRR*LPSHTKNILPDKNLN-SGFDKTSFSN 526
           S T   TLTWR LF L +  ++    +I      +   T+N   D ++  SG D  SF+ 
Sbjct: 140 SPTNADTLTWRFLFDLAVTGVDAADFNIGGTTATITGITQNTSTDYSITISGGDLASFNG 199

Query: 527 SASTSLHKGDQDD 565
           +AS SL    Q D
Sbjct: 200 TASISLKPAGQYD 212


>tr|Q6KH19|Q6KH19_MYCMO Expressed protein OS=Mycoplasma mobile
           GN=MMOB6260 PE=4 SV=1
          Length = 167

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +2

Query: 266 ISLKLGLTMAYSFIALTLRSLVSRA-----ISEVRRGSMTEHTTLTWRALFSLYICDINS 430
           IS   G+  A +FI  T++S+VS++     I  +  G +     + W  L S+YI  IN+
Sbjct: 12  ISTIAGIFSAIAFIPQTIKSIVSKSTFGLSIGLISFGIIASSIWIIWGILSSIYIPSINA 71

Query: 431 IQAVRR*LPSHTKNILPDKNLNSGFD 508
                      T N+LP  +L  GF+
Sbjct: 72  -----------TNNVLP-SSLGPGFE 85


>tr|Q9U904|Q9U904_DROME MRNA, , similar to human isopeptidase T-3.
           (Fragment) OS=Drosophila melanogaster
           GN=isopeptidase-T-3 PE=2 SV=1
          Length = 412

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -3

Query: 369 VIDPRRTSEIALLTRLRRVNAMNEYAIVKPSLRDILWNCNNIFKCDINAFL--SALPQDQ 196
           ++ PRR +    ++R+R V   NE  +V+ + R +  NCN +   DIN     S +  D 
Sbjct: 154 ILSPRRNTLPQTVSRIREVPGPNE-QLVESATRYVPVNCNQLPTIDINEIFQQSNIQYDV 212

Query: 195 VEVLQSLRAKDTSIKGKQQWYP 130
            +VL SL     ++ G   + P
Sbjct: 213 RKVLISLAQASAAVIGAGPYAP 234


>tr|Q8IHD7|Q8IHD7_DROME AT11570p (Fragment) OS=Drosophila
           melanogaster GN=isopeptidase-T-3 PE=2 SV=1
          Length = 457

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -3

Query: 369 VIDPRRTSEIALLTRLRRVNAMNEYAIVKPSLRDILWNCNNIFKCDINAFL--SALPQDQ 196
           ++ PRR +    ++R+R V   NE  +V+ + R +  NCN +   DIN     S +  D 
Sbjct: 142 ILSPRRNTLPQTVSRIREVPGPNE-QLVESATRYVPVNCNQLPTIDINEIFQQSNIQYDV 200

Query: 195 VEVLQSLRAKDTSIKGKQQWYP 130
            +VL SL     ++ G   + P
Sbjct: 201 RKVLISLAQASAAVIGAGPYAP 222


>tr|Q86LF0|Q86LF0_DROME Isopeptidase-T-3, isoform A OS=Drosophila
           melanogaster GN=isopeptidase-T-3 PE=2 SV=1
          Length = 557

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -3

Query: 369 VIDPRRTSEIALLTRLRRVNAMNEYAIVKPSLRDILWNCNNIFKCDINAFL--SALPQDQ 196
           ++ PRR +    ++R+R V   NE  +V+ + R +  NCN +   DIN     S +  D 
Sbjct: 242 ILSPRRNTLPQTVSRIREVPGPNE-QLVESATRYVPVNCNQLPTIDINEIFQQSNIQYDV 300

Query: 195 VEVLQSLRAKDTSIKGKQQWYP 130
            +VL SL     ++ G   + P
Sbjct: 301 RKVLISLAQASAAVIGAGPYAP 322


>tr|B4QE55|B4QE55_DROSI GD11475 OS=Drosophila simulans GN=GD11475
           PE=4 SV=1
          Length = 561

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -3

Query: 369 VIDPRRTSEIALLTRLRRVNAMNEYAIVKPSLRDILWNCNNIFKCDINAFL--SALPQDQ 196
           ++ PRR +    ++R+R V   NE  +V+ + R +  NCN +   DIN     S +  D 
Sbjct: 246 ILSPRRNTLPQTVSRIREVPGPNE-QLVESATRYVPINCNQLPTIDINEIFQQSNIQYDV 304

Query: 195 VEVLQSLRAKDTSIKGKQQWYP 130
            +VL SL     ++ G   + P
Sbjct: 305 RKVLISLAQASAAVIGAGPYAP 326