BP914767
Clone id YMU001_000062_F07
Library
Length 422
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CATCCCAGCCTGTCAGTGAGGCAGGAAGCAGCAAATCATTAGAAGTACCTCTAAAACCTT
ACTTTTTTGTGCCTCCTCCTTTACCTTCATCTCAACCTACCTTTCTCCATCCTCCCCCTC
CATTGCAGCCGTCAGTTGGTGCTCCTCTTCTGCAGCCATTCCCTCCACCTGTGCCATCAC
CATCTCTGACACCAAATTCCGTGTTGCCAAGTAAGCCAGATTATTAGTAGGGAAGGAGTC
CGTGATGCTCTCTTCCGACTTGTGCAGAATGATACATTTATCGACATGGTCTTTGAGGAG
ATGTCGAAGGCACAAAGGCGACCAGCCTAGTTTAAGGTGTCACTCGTACGTTTGGTGCAG
GCTTCGCTCAGTTTTGACGCTTTCATGTATATTTGTACCTTGCTAAGCTGTATACTTCTA
TG
■■Homology search results ■■ -
sp_hit_id Q32LT7
Definition sp|Q32LT7|TTYH3_DANRE Protein tweety homolog 3 OS=Danio rerio
Align length 58
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914767|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F07.
(422 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q32LT7|TTYH3_DANRE Protein tweety homolog 3 OS=Danio rerio GN... 32 1.3
sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2... 30 3.0
sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabi... 30 3.0
sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis e... 30 3.9
sp|Q73IE4|CLPB_WOLPM Chaperone protein clpB OS=Wolbachia pipient... 30 3.9
sp|Q9H098|F107B_HUMAN Protein FAM107B OS=Homo sapiens GN=FAM107B... 30 5.0
sp|Q5U4F3|F107B_RAT Protein FAM107B OS=Rattus norvegicus GN=Fam1... 29 6.6
sp|Q3TGF2|F107B_MOUSE Protein FAM107B OS=Mus musculus GN=Fam107b... 29 6.6
sp|Q86X51|YX003_HUMAN Uncharacterized protein LOC340602 OS=Homo ... 29 8.6
sp|P20525|YVAP_VACCC Uncharacterized 9.9 kDa protein OS=Vaccinia... 29 8.6

>sp|Q32LT7|TTYH3_DANRE Protein tweety homolog 3 OS=Danio rerio
GN=ttyh3 PE=2 SV=1
Length = 560

Score = 31.6 bits (70), Expect = 1.3
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2

Query: 215 ARLLVGKES-VMLSSDLCRMIHLSTWSLRRCRRHKGDQPSLRCHSYVWCRLRSVLTLS 385
A LL+G + V L+ DL ++ S W L CRR D P+ C WC + + L S
Sbjct: 43 AVLLLGAAALVCLALDLLFLLFYSFW-LCCCRRKNHDSPNADCCCTAWCVIIATLVCS 99


>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2
OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3
Length = 1236

Score = 30.4 bits (67), Expect = 3.0
Identities = 29/84 (34%), Positives = 40/84 (47%)
Frame = -3

Query: 300 LLKDHVDKCIILHKSEESITDSFPTNNLAYLATRNLVSEMVMAQVEGMAAEEEHQLTAAM 121
L K+H+ K + SEE T+ F Y +LV++ V VE + AEEE + AM
Sbjct: 648 LQKEHIHKLLNAEYSEEYATNEFGEEEGPY-GWSSLVNDGV---VEYVDAEEEETIMIAM 703

Query: 120 EGEDGER*VEMKVKEEAQKSKVLE 49
ED E + + QKS LE
Sbjct: 704 TPEDLEA-SKSSLTATQQKSLQLE 726


>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein
OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2
Length = 367

Score = 30.4 bits (67), Expect = 3.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1

Query: 220 IISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
+ISR+ V++AL L+Q D FID + + A
Sbjct: 334 VISRDKVKEALLSLLQEDEFIDKITRTLQNA 364


>sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis
elegans GN=ceh-21 PE=2 SV=3
Length = 495

Score = 30.0 bits (66), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1

Query: 368 SEACTKRTSDTLN*AGRLCAFDISSKTMSINVSFCTSRKRASRTPSL 228
S+A TKR S T A C +SS + + + + RA+ TP L
Sbjct: 203 SKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249


>sp|Q73IE4|CLPB_WOLPM Chaperone protein clpB OS=Wolbachia pipientis
wMel GN=clpB PE=3 SV=1
Length = 853

Score = 30.0 bits (66), Expect = 3.9
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -3

Query: 261 KSEESITDSFPTNNLAYLATRNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKV 82
K++E +TDSF + N+VS+ V+ M E+ +L ME E G R + K
Sbjct: 516 KNQEKVTDSFLKKEVTGDDIANIVSKWTGIPVDNMMHSEKEKL-LNMENEIGRRVIGQKD 574

Query: 81 KEEAQKSKV 55
EA + V
Sbjct: 575 AIEAISNAV 583


>sp|Q9H098|F107B_HUMAN Protein FAM107B OS=Homo sapiens GN=FAM107B
PE=2 SV=1
Length = 131

Score = 29.6 bits (65), Expect = 5.0
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -3

Query: 201 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 37
++L E++M Q G+A + + +L ME ++ ++ K +E +K LE+ L+
Sbjct: 31 QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|Q5U4F3|F107B_RAT Protein FAM107B OS=Rattus norvegicus GN=Fam107b
PE=2 SV=1
Length = 131

Score = 29.3 bits (64), Expect = 6.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -3

Query: 201 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 37
++L E++M Q G+A + + +L ME ++ ++ K +E +K LE+ L+
Sbjct: 31 QDLHRELLMNQKRGLAPQNKPELQKVMEKRRRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|Q3TGF2|F107B_MOUSE Protein FAM107B OS=Mus musculus GN=Fam107b
PE=2 SV=2
Length = 131

Score = 29.3 bits (64), Expect = 6.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -3

Query: 201 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 37
++L E++M Q G+A + + +L ME ++ ++ K +E +K LE+ L+
Sbjct: 31 QDLHRELLMNQKRGLAPQNKPELQKVMEKRRRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|Q86X51|YX003_HUMAN Uncharacterized protein LOC340602 OS=Homo
sapiens PE=2 SV=1
Length = 503

Score = 28.9 bits (63), Expect = 8.6
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2

Query: 71 ASSFTFISTYLSPSSPSIAAVSWCSSSAAIPSTCAITISD 190
A+S T +S+ SPS + + S SSAA ++ AI I+D
Sbjct: 42 AASVTTVSSQASPSGGAALSSSTAGSSAAAATSAAIFITD 81


>sp|P20525|YVAP_VACCC Uncharacterized 9.9 kDa protein OS=Vaccinia
virus (strain Copenhagen) GN=A ORF P PE=4 SV=1
Length = 89

Score = 28.9 bits (63), Expect = 8.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +2

Query: 68 CASSFTFISTYLSPSSPSIAAVSW------CSSSAAIPSTCAITISDTKFRVAK 211
C+ SF+FIS +L+P PS + W SSS S + + +T F K
Sbjct: 9 CSFSFSFISNHLTPDGPS--KIGWLDKGFIISSSTLYFSMTSNVVCETTFPAGK 60


tr_hit_id A9S7I6
Definition tr|A9S7I6|A9S7I6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 38
Score (bit) 42.7
E-value 0.0002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914767|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F07.
(422 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9S7I6|A9S7I6_PHYPA Predicted protein OS=Physcomitrella paten... 43 2e-04
tr|Q7XHS7|Q7XHS7_ORYSJ Os07g0249600 protein OS=Oryza sativa subs... 44 0.003
tr|A2YJX0|A2YJX0_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.003
tr|B8LQS3|B8LQS3_PICSI Putative uncharacterized protein OS=Picea... 43 0.007
tr|Q53QH1|Q53QH1_ORYSJ mRNA decapping enzyme, putative, expresse... 43 0.009
tr|B8BJ62|B8BJ62_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.009
tr|A3C8R8|A3C8R8_ORYSJ Putative uncharacterized protein OS=Oryza... 43 0.009
tr|Q2QXH6|Q2QXH6_ORYSJ Os12g0156400 protein OS=Oryza sativa subs... 41 0.026
tr|B8BN98|B8BN98_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.026
tr|B6UBI1|B6UBI1_MAIZE Dcp1-like decapping family protein OS=Zea... 41 0.026
tr|B4FIG5|B4FIG5_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.026
tr|B6T785|B6T785_MAIZE Dcp1-like decapping family protein OS=Zea... 40 0.044
tr|B4FJC9|B4FJC9_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.044
tr|B6TBF0|B6TBF0_MAIZE Dcp1-like decapping family protein OS=Zea... 39 0.13
tr|B4FW43|B4FW43_MAIZE Putative uncharacterized protein OS=Zea m... 39 0.13
tr|Q10AY3|Q10AY3_ORYSJ cDNA clone:J013148J04, full insert sequen... 37 0.63
tr|Q0DLZ5|Q0DLZ5_ORYSJ Os03g0837000 protein (Fragment) OS=Oryza ... 37 0.63
tr|B8AN96|B8AN96_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.63
tr|Q38JI6|Q38JI6_SOLTU Putative uncharacterized protein OS=Solan... 36 0.83
tr|A9SR97|A9SR97_PHYPA Predicted protein (Fragment) OS=Physcomit... 36 0.83
tr|Q8PBG7|Q8PBG7_XANCP Riboflavin biosynthesis protein OS=Xantho... 35 1.4
tr|Q4US39|Q4US39_XANC8 Riboflavin biosynthesis protein OS=Xantho... 35 1.4
tr|A9PI85|A9PI85_POPTR Putative uncharacterized protein OS=Popul... 35 1.4
tr|A9PE94|A9PE94_POPTR Putative uncharacterized protein OS=Popul... 35 1.4
tr|B4FT08|B4FT08_MAIZE Dcp1-like decapping family protein OS=Zea... 35 1.8
tr|A6ET14|A6ET14_9BACT Putative uncharacterized protein OS=unide... 34 3.1
tr|A9TRE6|A9TRE6_PHYPA Predicted protein OS=Physcomitrella paten... 34 3.1
tr|A9SR98|A9SR98_PHYPA Predicted protein (Fragment) OS=Physcomit... 34 3.1
tr|A7QF74|A7QF74_VITVI Chromosome undetermined scaffold_87, whol... 33 5.4
tr|B2FTI9|B2FTI9_STRMK Putative riboflavin biosynthesis protein ... 33 7.0

>tr|A9S7I6|A9S7I6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_182007 PE=4 SV=1
Length = 356

Score = 42.7 bits (99), Expect(2) = 2e-04
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1

Query: 199 PCCQVSQIISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
P Q S I+++GVR+AL RLV+N+ FIDMV+ EM A
Sbjct: 316 PTMQHSVSITKDGVREALNRLVKNEHFIDMVYREMMNA 353



Score = 25.0 bits (53), Expect(2) = 2e-04
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3

Query: 51 LKPYFFVPPPL 83
+KP FFVPPPL
Sbjct: 265 IKPSFFVPPPL 275


>tr|Q7XHS7|Q7XHS7_ORYSJ Os07g0249600 protein OS=Oryza sativa subsp.
japonica GN=P0021G06.113 PE=2 SV=1
Length = 382

Score = 44.3 bits (103), Expect = 0.003
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +1

Query: 214 SQIISREGVRDALFRLVQNDTFIDMVFEEMSK 309
S ++SRE VRDAL RLV+ND FID+V+ E+ K
Sbjct: 350 SPVLSREKVRDALLRLVENDDFIDLVYREIVK 381


>tr|A2YJX0|A2YJX0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_25526 PE=4 SV=1
Length = 382

Score = 44.3 bits (103), Expect = 0.003
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +1

Query: 214 SQIISREGVRDALFRLVQNDTFIDMVFEEMSK 309
S ++SRE VRDAL RLV+ND FID+V+ E+ K
Sbjct: 350 SPVLSREKVRDALLRLVENDDFIDLVYREIVK 381


>tr|B8LQS3|B8LQS3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 368

Score = 43.1 bits (100), Expect = 0.007
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = +1

Query: 199 PCCQVSQ--IISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
P VSQ II+R+ VRD L RLVQN+ FIDMV+ EM A
Sbjct: 326 PASTVSQGPIITRDKVRDTLARLVQNEHFIDMVYREMLNA 365


>tr|Q53QH1|Q53QH1_ORYSJ mRNA decapping enzyme, putative, expressed
OS=Oryza sativa subsp. japonica GN=LOC_Os11g05650 PE=4
SV=1
Length = 380

Score = 42.7 bits (99), Expect = 0.009
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +1

Query: 199 PCCQVSQIISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
P IISR+ V++AL RLVQND FID+V+ E+ A
Sbjct: 341 PSYNEGPIISRDKVKEALLRLVQNDQFIDLVYRELQNA 378


>tr|B8BJ62|B8BJ62_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_35166 PE=4 SV=1
Length = 332

Score = 42.7 bits (99), Expect = 0.009
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +1

Query: 199 PCCQVSQIISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
P IISR+ V++AL RLVQND FID+V+ E+ A
Sbjct: 293 PSYNEGPIISRDKVKEALLRLVQNDQFIDLVYRELQNA 330


>tr|A3C8R8|A3C8R8_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_031690 PE=4 SV=1
Length = 334

Score = 42.7 bits (99), Expect = 0.009
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +1

Query: 199 PCCQVSQIISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
P IISR+ V++AL RLVQND FID+V+ E+ A
Sbjct: 295 PSYNEGPIISRDKVKEALLRLVQNDQFIDLVYRELQNA 332


>tr|Q2QXH6|Q2QXH6_ORYSJ Os12g0156400 protein OS=Oryza sativa subsp.
japonica GN=Os12g0156400 PE=2 SV=2
Length = 374

Score = 41.2 bits (95), Expect = 0.026
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +1

Query: 220 IISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
+ISR+ V+DAL RLVQND FI+++++E+ A
Sbjct: 342 VISRDKVKDALLRLVQNDEFINLLYQELQNA 372


>tr|B8BN98|B8BN98_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_37531 PE=4 SV=1
Length = 374

Score = 41.2 bits (95), Expect = 0.026
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +1

Query: 220 IISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
+ISR+ V+DAL RLVQND FI+++++E+ A
Sbjct: 342 VISRDKVKDALLRLVQNDEFINLLYQELQNA 372


>tr|B6UBI1|B6UBI1_MAIZE Dcp1-like decapping family protein OS=Zea
mays PE=2 SV=1
Length = 382

Score = 41.2 bits (95), Expect = 0.026
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1

Query: 211 VSQIISREGVRDALFRLVQNDTFIDMVFEEMSKAQ 315
+S +SR+ VRDAL RLV+ND FID+V+ E+ Q
Sbjct: 348 LSPALSRDKVRDALLRLVENDEFIDLVYGEIMNRQ 382