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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914767
Clone id YMU001_000062_F07
Library
Length 422
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATCCCAGCCTGTCAGTGAGGCAGGAAGCAGCAAATCATTAGAAGTACCTCTAAAACCTT
ACTTTTTTGTGCCTCCTCCTTTACCTTCATCTCAACCTACCTTTCTCCATCCTCCCCCTC
CATTGCAGCCGTCAGTTGGTGCTCCTCTTCTGCAGCCATTCCCTCCACCTGTGCCATCAC
CATCTCTGACACCAAATTCCGTGTTGCCAAGTAAGCCAGATTATTAGTAGGGAAGGAGTC
CGTGATGCTCTCTTCCGACTTGTGCAGAATGATACATTTATCGACATGGTCTTTGAGGAG
ATGTCGAAGGCACAAAGGCGACCAGCCTAGTTTAAGGTGTCACTCGTACGTTTGGTGCAG
GCTTCGCTCAGTTTTGACGCTTTCATGTATATTTGTACCTTGCTAAGCTGTATACTTCTA
TG
■■Homology search results ■■ -
sp_hit_id Q32LT7
Definition sp|Q32LT7|TTYH3_DANRE Protein tweety homolog 3 OS=Danio rerio
Align length 58
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914767|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F07.
         (422 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q32LT7|TTYH3_DANRE Protein tweety homolog 3 OS=Danio rerio GN...    32   1.3  
sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2...    30   3.0  
sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabi...    30   3.0  
sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis e...    30   3.9  
sp|Q73IE4|CLPB_WOLPM Chaperone protein clpB OS=Wolbachia pipient...    30   3.9  
sp|Q9H098|F107B_HUMAN Protein FAM107B OS=Homo sapiens GN=FAM107B...    30   5.0  
sp|Q5U4F3|F107B_RAT Protein FAM107B OS=Rattus norvegicus GN=Fam1...    29   6.6  
sp|Q3TGF2|F107B_MOUSE Protein FAM107B OS=Mus musculus GN=Fam107b...    29   6.6  
sp|Q86X51|YX003_HUMAN Uncharacterized protein LOC340602 OS=Homo ...    29   8.6  
sp|P20525|YVAP_VACCC Uncharacterized 9.9 kDa protein OS=Vaccinia...    29   8.6  

>sp|Q32LT7|TTYH3_DANRE Protein tweety homolog 3 OS=Danio rerio
           GN=ttyh3 PE=2 SV=1
          Length = 560

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 215 ARLLVGKES-VMLSSDLCRMIHLSTWSLRRCRRHKGDQPSLRCHSYVWCRLRSVLTLS 385
           A LL+G  + V L+ DL  ++  S W L  CRR   D P+  C    WC + + L  S
Sbjct: 43  AVLLLGAAALVCLALDLLFLLFYSFW-LCCCRRKNHDSPNADCCCTAWCVIIATLVCS 99


>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2
           OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3
          Length = 1236

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 29/84 (34%), Positives = 40/84 (47%)
 Frame = -3

Query: 300 LLKDHVDKCIILHKSEESITDSFPTNNLAYLATRNLVSEMVMAQVEGMAAEEEHQLTAAM 121
           L K+H+ K +    SEE  T+ F      Y    +LV++ V   VE + AEEE  +  AM
Sbjct: 648 LQKEHIHKLLNAEYSEEYATNEFGEEEGPY-GWSSLVNDGV---VEYVDAEEEETIMIAM 703

Query: 120 EGEDGER*VEMKVKEEAQKSKVLE 49
             ED E   +  +    QKS  LE
Sbjct: 704 TPEDLEA-SKSSLTATQQKSLQLE 726


>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein
           OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2
          Length = 367

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 220 IISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
           +ISR+ V++AL  L+Q D FID +   +  A
Sbjct: 334 VISRDKVKEALLSLLQEDEFIDKITRTLQNA 364


>sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis
           elegans GN=ceh-21 PE=2 SV=3
          Length = 495

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 368 SEACTKRTSDTLN*AGRLCAFDISSKTMSINVSFCTSRKRASRTPSL 228
           S+A TKR S T   A   C   +SS +   +  +   + RA+ TP L
Sbjct: 203 SKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249


>sp|Q73IE4|CLPB_WOLPM Chaperone protein clpB OS=Wolbachia pipientis
           wMel GN=clpB PE=3 SV=1
          Length = 853

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -3

Query: 261 KSEESITDSFPTNNLAYLATRNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKV 82
           K++E +TDSF    +      N+VS+     V+ M   E+ +L   ME E G R +  K 
Sbjct: 516 KNQEKVTDSFLKKEVTGDDIANIVSKWTGIPVDNMMHSEKEKL-LNMENEIGRRVIGQKD 574

Query: 81  KEEAQKSKV 55
             EA  + V
Sbjct: 575 AIEAISNAV 583


>sp|Q9H098|F107B_HUMAN Protein FAM107B OS=Homo sapiens GN=FAM107B
           PE=2 SV=1
          Length = 131

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -3

Query: 201 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 37
           ++L  E++M Q  G+A + + +L   ME    ++ ++ K +E  +K   LE+ L+
Sbjct: 31  QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|Q5U4F3|F107B_RAT Protein FAM107B OS=Rattus norvegicus GN=Fam107b
           PE=2 SV=1
          Length = 131

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -3

Query: 201 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 37
           ++L  E++M Q  G+A + + +L   ME    ++ ++ K +E  +K   LE+ L+
Sbjct: 31  QDLHRELLMNQKRGLAPQNKPELQKVMEKRRRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|Q3TGF2|F107B_MOUSE Protein FAM107B OS=Mus musculus GN=Fam107b
           PE=2 SV=2
          Length = 131

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -3

Query: 201 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 37
           ++L  E++M Q  G+A + + +L   ME    ++ ++ K +E  +K   LE+ L+
Sbjct: 31  QDLHRELLMNQKRGLAPQNKPELQKVMEKRRRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|Q86X51|YX003_HUMAN Uncharacterized protein LOC340602 OS=Homo
           sapiens PE=2 SV=1
          Length = 503

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 71  ASSFTFISTYLSPSSPSIAAVSWCSSSAAIPSTCAITISD 190
           A+S T +S+  SPS  +  + S   SSAA  ++ AI I+D
Sbjct: 42  AASVTTVSSQASPSGGAALSSSTAGSSAAAATSAAIFITD 81


>sp|P20525|YVAP_VACCC Uncharacterized 9.9 kDa protein OS=Vaccinia
           virus (strain Copenhagen) GN=A ORF P PE=4 SV=1
          Length = 89

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +2

Query: 68  CASSFTFISTYLSPSSPSIAAVSW------CSSSAAIPSTCAITISDTKFRVAK 211
           C+ SF+FIS +L+P  PS   + W       SSS    S  +  + +T F   K
Sbjct: 9   CSFSFSFISNHLTPDGPS--KIGWLDKGFIISSSTLYFSMTSNVVCETTFPAGK 60
tr_hit_id A9S7I6
Definition tr|A9S7I6|A9S7I6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 38
Score (bit) 42.7
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914767|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F07.
         (422 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S7I6|A9S7I6_PHYPA Predicted protein OS=Physcomitrella paten...    43   2e-04
tr|Q7XHS7|Q7XHS7_ORYSJ Os07g0249600 protein OS=Oryza sativa subs...    44   0.003
tr|A2YJX0|A2YJX0_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|B8LQS3|B8LQS3_PICSI Putative uncharacterized protein OS=Picea...    43   0.007
tr|Q53QH1|Q53QH1_ORYSJ mRNA decapping enzyme, putative, expresse...    43   0.009
tr|B8BJ62|B8BJ62_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009
tr|A3C8R8|A3C8R8_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.009
tr|Q2QXH6|Q2QXH6_ORYSJ Os12g0156400 protein OS=Oryza sativa subs...    41   0.026
tr|B8BN98|B8BN98_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.026
tr|B6UBI1|B6UBI1_MAIZE Dcp1-like decapping family protein OS=Zea...    41   0.026
tr|B4FIG5|B4FIG5_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.026
tr|B6T785|B6T785_MAIZE Dcp1-like decapping family protein OS=Zea...    40   0.044
tr|B4FJC9|B4FJC9_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.044
tr|B6TBF0|B6TBF0_MAIZE Dcp1-like decapping family protein OS=Zea...    39   0.13 
tr|B4FW43|B4FW43_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|Q10AY3|Q10AY3_ORYSJ cDNA clone:J013148J04, full insert sequen...    37   0.63 
tr|Q0DLZ5|Q0DLZ5_ORYSJ Os03g0837000 protein (Fragment) OS=Oryza ...    37   0.63 
tr|B8AN96|B8AN96_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.63 
tr|Q38JI6|Q38JI6_SOLTU Putative uncharacterized protein OS=Solan...    36   0.83 
tr|A9SR97|A9SR97_PHYPA Predicted protein (Fragment) OS=Physcomit...    36   0.83 
tr|Q8PBG7|Q8PBG7_XANCP Riboflavin biosynthesis protein OS=Xantho...    35   1.4  
tr|Q4US39|Q4US39_XANC8 Riboflavin biosynthesis protein OS=Xantho...    35   1.4  
tr|A9PI85|A9PI85_POPTR Putative uncharacterized protein OS=Popul...    35   1.4  
tr|A9PE94|A9PE94_POPTR Putative uncharacterized protein OS=Popul...    35   1.4  
tr|B4FT08|B4FT08_MAIZE Dcp1-like decapping family protein OS=Zea...    35   1.8  
tr|A6ET14|A6ET14_9BACT Putative uncharacterized protein OS=unide...    34   3.1  
tr|A9TRE6|A9TRE6_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.1  
tr|A9SR98|A9SR98_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   3.1  
tr|A7QF74|A7QF74_VITVI Chromosome undetermined scaffold_87, whol...    33   5.4  
tr|B2FTI9|B2FTI9_STRMK Putative riboflavin biosynthesis protein ...    33   7.0  

>tr|A9S7I6|A9S7I6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_182007 PE=4 SV=1
          Length = 356

 Score = 42.7 bits (99), Expect(2) = 2e-04
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +1

Query: 199 PCCQVSQIISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
           P  Q S  I+++GVR+AL RLV+N+ FIDMV+ EM  A
Sbjct: 316 PTMQHSVSITKDGVREALNRLVKNEHFIDMVYREMMNA 353



 Score = 25.0 bits (53), Expect(2) = 2e-04
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 51  LKPYFFVPPPL 83
           +KP FFVPPPL
Sbjct: 265 IKPSFFVPPPL 275


>tr|Q7XHS7|Q7XHS7_ORYSJ Os07g0249600 protein OS=Oryza sativa subsp.
           japonica GN=P0021G06.113 PE=2 SV=1
          Length = 382

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = +1

Query: 214 SQIISREGVRDALFRLVQNDTFIDMVFEEMSK 309
           S ++SRE VRDAL RLV+ND FID+V+ E+ K
Sbjct: 350 SPVLSREKVRDALLRLVENDDFIDLVYREIVK 381


>tr|A2YJX0|A2YJX0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25526 PE=4 SV=1
          Length = 382

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = +1

Query: 214 SQIISREGVRDALFRLVQNDTFIDMVFEEMSK 309
           S ++SRE VRDAL RLV+ND FID+V+ E+ K
Sbjct: 350 SPVLSREKVRDALLRLVENDDFIDLVYREIVK 381


>tr|B8LQS3|B8LQS3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 368

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +1

Query: 199 PCCQVSQ--IISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
           P   VSQ  II+R+ VRD L RLVQN+ FIDMV+ EM  A
Sbjct: 326 PASTVSQGPIITRDKVRDTLARLVQNEHFIDMVYREMLNA 365


>tr|Q53QH1|Q53QH1_ORYSJ mRNA decapping enzyme, putative, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os11g05650 PE=4
           SV=1
          Length = 380

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +1

Query: 199 PCCQVSQIISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
           P      IISR+ V++AL RLVQND FID+V+ E+  A
Sbjct: 341 PSYNEGPIISRDKVKEALLRLVQNDQFIDLVYRELQNA 378


>tr|B8BJ62|B8BJ62_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35166 PE=4 SV=1
          Length = 332

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +1

Query: 199 PCCQVSQIISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
           P      IISR+ V++AL RLVQND FID+V+ E+  A
Sbjct: 293 PSYNEGPIISRDKVKEALLRLVQNDQFIDLVYRELQNA 330


>tr|A3C8R8|A3C8R8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_031690 PE=4 SV=1
          Length = 334

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +1

Query: 199 PCCQVSQIISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
           P      IISR+ V++AL RLVQND FID+V+ E+  A
Sbjct: 295 PSYNEGPIISRDKVKEALLRLVQNDQFIDLVYRELQNA 332


>tr|Q2QXH6|Q2QXH6_ORYSJ Os12g0156400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0156400 PE=2 SV=2
          Length = 374

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 17/31 (54%), Positives = 26/31 (83%)
 Frame = +1

Query: 220 IISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
           +ISR+ V+DAL RLVQND FI+++++E+  A
Sbjct: 342 VISRDKVKDALLRLVQNDEFINLLYQELQNA 372


>tr|B8BN98|B8BN98_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37531 PE=4 SV=1
          Length = 374

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 17/31 (54%), Positives = 26/31 (83%)
 Frame = +1

Query: 220 IISREGVRDALFRLVQNDTFIDMVFEEMSKA 312
           +ISR+ V+DAL RLVQND FI+++++E+  A
Sbjct: 342 VISRDKVKDALLRLVQNDEFINLLYQELQNA 372


>tr|B6UBI1|B6UBI1_MAIZE Dcp1-like decapping family protein OS=Zea
           mays PE=2 SV=1
          Length = 382

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +1

Query: 211 VSQIISREGVRDALFRLVQNDTFIDMVFEEMSKAQ 315
           +S  +SR+ VRDAL RLV+ND FID+V+ E+   Q
Sbjct: 348 LSPALSRDKVRDALLRLVENDEFIDLVYGEIMNRQ 382