BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914768|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F08.
         (450 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r...    30   6.1  
sp|O55087|MEF2B_MOUSE Myocyte-specific enhancer factor 2B OS=Mus...    30   6.1  
sp|Q872W1|ATG17_NEUCR Autophagy-related protein 17 OS=Neurospora...    30   6.1  
sp|O88552|CLD2_MOUSE Claudin-2 OS=Mus musculus GN=Cldn2 PE=1 SV=1      30   6.3  
sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mu...    29   8.0  
sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi GN=ar...    29   8.2  

>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r
           PE=1 SV=3
          Length = 2224

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 244 QQRMKLFQLDCLLFSPSTVHLSKASPQQMLLNPEGRHPFLFGCSNEL 104
           Q+ +++   D L F P  V L+K    + L  P  R PF+   + +L
Sbjct: 788 QKALRMVDSDVLGFDPDVVPLNKEQLAEQLSEPTDRRPFVIAAALQL 834


>sp|O55087|MEF2B_MOUSE Myocyte-specific enhancer factor 2B OS=Mus
           musculus GN=Mef2b PE=1 SV=1
          Length = 349

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 208 LFSPSTVHLSKASPQQMLLNPEGRHPFLFGCSNELPPRLVGRK 80
           +FSPS  HL+  +P  + L  +GR P       +LPP LVG +
Sbjct: 180 IFSPS--HLASKTPPPLYLATDGRRP-------DLPPGLVGAR 213


>sp|Q872W1|ATG17_NEUCR Autophagy-related protein 17 OS=Neurospora
           crassa GN=atg-17 PE=3 SV=1
          Length = 568

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 215 LPSFFTKHRSPVQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKSP 75
           + SF +   SP  +++P DAP+PRR +   +      AA A   +SP
Sbjct: 1   MASFHSHSPSPPAALSPDDAPQPRRPSRTSLHDAAAAAAPALSPESP 47


>sp|O88552|CLD2_MOUSE Claudin-2 OS=Mus musculus GN=Cldn2 PE=1 SV=1
          Length = 230

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 313 GSVKCNIYAILTL*PAGVLLDCTKALSSSRMLTLFCIISCVMYIC 447
           G  +C+IY+ L   PA +       ++SS M +L CIIS V   C
Sbjct: 60  GITQCDIYSTLLGLPADIQAAQAMMVTSSAMSSLACIISVVGMRC 104


>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus
            musculus GN=Cep250 PE=1 SV=3
          Length = 2414

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = -3

Query: 250  LQQQRMKLFQLDCLLFSPSTVHLSKASPQQMLLNPEGRHPFLFGCSNELPPRLVGRKVQC 71
            +Q  + +L  L+CL       H    S Q+M+   EG+          L   L  R  + 
Sbjct: 1537 IQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQEL 1596

Query: 70   QCEKTQ-----NQTTHLSSILQ 20
            Q + +Q     N +THL+  LQ
Sbjct: 1597 QAQSSQLHELENHSTHLAKELQ 1618


>sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi GN=aroK
           PE=3 SV=1
          Length = 274

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 124 TGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAG 225
           T ++A+  G GA++G+ LWT  R  V  +G   G
Sbjct: 12  TIVNAFATGKGAAIGIELWTEARVRVTGDGEVRG 45

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914768|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F08.
         (450 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella paten...   131   1e-29
tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella paten...   126   5e-28
tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea...   121   2e-26
tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella paten...   107   2e-22
tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b P...    34   4.2  
tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family OS...    33   5.5  
tr|Q9DTD2|Q9DTD2_9VIRU Genes for ORF2, ORF1, isolate: s-TTV CH71...    33   7.2  
tr|A2F0L8|A2F0L8_TRIVA Putative uncharacterized protein OS=Trich...    33   7.2  
tr|A3NEL1|A3NEL1_BURP6 Transcriptional regulator, AraC family OS...    33   9.4  

>tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173543 PE=4 SV=1
          Length = 262

 Score =  131 bits (330), Expect = 1e-29
 Identities = 60/78 (76%), Positives = 68/78 (87%)
 Frame = +1

Query: 1   FHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLW 180
           FHLGYCIAIW+KDES DFEFFRTG+GLF       +RLN RTG+DAY+LGLGASVGVM+W
Sbjct: 167 FHLGYCIAIWVKDESLDFEFFRTGLGLFGLLALAAVRLNARTGIDAYILGLGASVGVMVW 226

Query: 181 TGERCLVKKEGSPAGIVS 234
           TGERCLVK+EG PAGIV+
Sbjct: 227 TGERCLVKREGHPAGIVA 244


>tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84520 PE=4 SV=1
          Length = 258

 Score =  126 bits (317), Expect = 5e-28
 Identities = 55/78 (70%), Positives = 67/78 (85%)
 Frame = +1

Query: 1   FHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLW 180
           FHLGYCIA+W+KD++ DFEF RTG+GLF        RLN RTG+DAY+LGLGAS+GVM+W
Sbjct: 163 FHLGYCIAVWVKDDNLDFEFLRTGLGLFGLLAVSAFRLNTRTGIDAYILGLGASLGVMVW 222

Query: 181 TGERCLVKKEGSPAGIVS 234
           TGERCLVKKEG+PAG+V+
Sbjct: 223 TGERCLVKKEGNPAGVVA 240


>tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 264

 Score =  121 bits (303), Expect = 2e-26
 Identities = 53/78 (67%), Positives = 65/78 (83%)
 Frame = +1

Query: 1   FHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLW 180
           F+LGYCIA+W+KD++ D +F RTG GLFC      IRLNNRTG+DAY+LGLGASVGVM+W
Sbjct: 169 FNLGYCIAVWVKDDNMDNDFLRTGCGLFCLLVLAAIRLNNRTGIDAYILGLGASVGVMVW 228

Query: 181 TGERCLVKKEGSPAGIVS 234
            GERC VK+E +PAGIV+
Sbjct: 229 AGERCFVKRESNPAGIVA 246


>tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_230440 PE=4 SV=1
          Length = 249

 Score =  107 bits (268), Expect = 2e-22
 Identities = 47/78 (60%), Positives = 62/78 (79%)
 Frame = +1

Query: 1   FHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLW 180
           FHLGYCIAIW+KD+  + EF RTG+GLF       +RLN  TG DA++LG+ +S+GVM+W
Sbjct: 154 FHLGYCIAIWVKDDGLNLEFIRTGLGLFFLLAVSALRLNVETGKDAHVLGIVSSLGVMVW 213

Query: 181 TGERCLVKKEGSPAGIVS 234
           TGERCL+K+EGS AG+V+
Sbjct: 214 TGERCLIKREGSLAGVVA 231


>tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b PE=2
           SV=1
          Length = 673

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -2

Query: 239 KNETIPAGLPSFFTKHRSPVQSITPTDAPKPRR*ASIPVR----LFKRIAAKASRQKSPM 72
           K E  P+G P F+ K  +P QS  P+ +P P    S P+      F R A KA ++  P 
Sbjct: 443 KKEKSPSGSPHFYRKGTTPTQS--PSQSPGPTPPPSPPLTKKKPFFNRSAPKAIKENKP- 499

Query: 71  PVRKN 57
           P  +N
Sbjct: 500 PAAEN 504


>tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family
           OS=Burkholderia pseudomallei 576 GN=BUC_4083 PE=4 SV=1
          Length = 118

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 224 PAGLPSFFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKS 78
           P G P+ +TK RSP  VQ  TPT    PR       R  K+ AA+ +R  S
Sbjct: 68  PPGEPAAYTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 118


>tr|Q9DTD2|Q9DTD2_9VIRU Genes for ORF2, ORF1, isolate: s-TTV CH71
           OS=Torque teno virus PE=4 SV=1
          Length = 727

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 316 SHDDSRSADVLSHELQ*KT-EQPLQQQRMKLFQLDCLLFSPSTVHLSKASPQQMLL 152
           S ++ ++ +  + E + KT EQ L+QQR+  FQL CL +    V    A P Q L+
Sbjct: 671 SQEEKKARESKAQEEEAKTLEQQLEQQRLLGFQLRCLAYQVLQVQKGHAIPPQALV 726


>tr|A2F0L8|A2F0L8_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_217710 PE=4 SV=1
          Length = 244

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +3

Query: 225 NSFILCCCN---GCSVFYCNS*DN 287
           + FILCCC    GCS  YCN  DN
Sbjct: 213 SGFILCCCECCKGCSCSYCNKKDN 236


>tr|A3NEL1|A3NEL1_BURP6 Transcriptional regulator, AraC family
           OS=Burkholderia pseudomallei (strain 668)
           GN=BURPS668_3787 PE=4 SV=1
          Length = 132

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 227 IPAGLPSFFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKS 78
           +P G P+  TK RSP  VQ  TPT    PR       R  K+ AA+ +R  S
Sbjct: 81  LPPGEPAAHTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 132