BP914768
Clone id YMU001_000062_F08
Library
Length 450
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTCATTTGGGTTATTGCATTGCAATATGGATGAAAGATGAGTCGTTTGATTTTGAGTTT
TTTCGCACTGGCATTGGACTTTTCTGCCTACTAGCCTTGGCGGCAATTCGTTTGAACAAC
CGAACAGGAATGGATGCCTACCTTCTGGGTTTAGGAGCATCTGTTGGGGTGATGCTTTGG
ACAGGTGAACGGTGCTTGGTGAAAAAAGAAGGCAGTCCAGCTGGAATAGTTTCATTCTTT
GCTGCTGCAATGGCTGCTCTGTTTTCTACTGCAATTCATGAGACAATACGTCGGCGCTTC
TAGAATCATCGTGGCTCGGTTAAGTGCAACATCTACGCTATCTTGACACTATAGCCTGCT
GGAGTATTACTGGATTGTACAAAAGCTCTTAGTAGCAGCAGAATGCTGACACTGTTTTGT
ATTATAAGTTGTGTTATGTACATATGTCGC
■■Homology search results ■■ -
sp_hit_id P05990
Definition sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster
Align length 47
Score (bit) 29.6
E-value 6.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914768|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F08.
(450 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r... 30 6.1
sp|O55087|MEF2B_MOUSE Myocyte-specific enhancer factor 2B OS=Mus... 30 6.1
sp|Q872W1|ATG17_NEUCR Autophagy-related protein 17 OS=Neurospora... 30 6.1
sp|O88552|CLD2_MOUSE Claudin-2 OS=Mus musculus GN=Cldn2 PE=1 SV=1 30 6.3
sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mu... 29 8.0
sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi GN=ar... 29 8.2

>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r
PE=1 SV=3
Length = 2224

Score = 29.6 bits (65), Expect = 6.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3

Query: 244 QQRMKLFQLDCLLFSPSTVHLSKASPQQMLLNPEGRHPFLFGCSNEL 104
Q+ +++ D L F P V L+K + L P R PF+ + +L
Sbjct: 788 QKALRMVDSDVLGFDPDVVPLNKEQLAEQLSEPTDRRPFVIAAALQL 834


>sp|O55087|MEF2B_MOUSE Myocyte-specific enhancer factor 2B OS=Mus
musculus GN=Mef2b PE=1 SV=1
Length = 349

Score = 29.6 bits (65), Expect = 6.1
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3

Query: 208 LFSPSTVHLSKASPQQMLLNPEGRHPFLFGCSNELPPRLVGRK 80
+FSPS HL+ +P + L +GR P +LPP LVG +
Sbjct: 180 IFSPS--HLASKTPPPLYLATDGRRP-------DLPPGLVGAR 213


>sp|Q872W1|ATG17_NEUCR Autophagy-related protein 17 OS=Neurospora
crassa GN=atg-17 PE=3 SV=1
Length = 568

Score = 29.6 bits (65), Expect = 6.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2

Query: 215 LPSFFTKHRSPVQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKSP 75
+ SF + SP +++P DAP+PRR + + AA A +SP
Sbjct: 1 MASFHSHSPSPPAALSPDDAPQPRRPSRTSLHDAAAAAAPALSPESP 47


>sp|O88552|CLD2_MOUSE Claudin-2 OS=Mus musculus GN=Cldn2 PE=1 SV=1
Length = 230

Score = 29.6 bits (65), Expect = 6.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1

Query: 313 GSVKCNIYAILTL*PAGVLLDCTKALSSSRMLTLFCIISCVMYIC 447
G +C+IY+ L PA + ++SS M +L CIIS V C
Sbjct: 60 GITQCDIYSTLLGLPADIQAAQAMMVTSSAMSSLACIISVVGMRC 104


>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus
musculus GN=Cep250 PE=1 SV=3
Length = 2414

Score = 29.3 bits (64), Expect = 8.0
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = -3

Query: 250 LQQQRMKLFQLDCLLFSPSTVHLSKASPQQMLLNPEGRHPFLFGCSNELPPRLVGRKVQC 71
+Q + +L L+CL H S Q+M+ EG+ L L R +
Sbjct: 1537 IQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQEL 1596

Query: 70 QCEKTQ-----NQTTHLSSILQ 20
Q + +Q N +THL+ LQ
Sbjct: 1597 QAQSSQLHELENHSTHLAKELQ 1618


>sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi GN=aroK
PE=3 SV=1
Length = 274

Score = 29.3 bits (64), Expect = 8.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1

Query: 124 TGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAG 225
T ++A+ G GA++G+ LWT R V +G G
Sbjct: 12 TIVNAFATGKGAAIGIELWTEARVRVTGDGEVRG 45


tr_hit_id A9U3Z5
Definition tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 78
Score (bit) 131.0
E-value 1.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914768|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F08.
(450 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella paten... 131 1e-29
tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella paten... 126 5e-28
tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea... 121 2e-26
tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella paten... 107 2e-22
tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b P... 34 4.2
tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family OS... 33 5.5
tr|Q9DTD2|Q9DTD2_9VIRU Genes for ORF2, ORF1, isolate: s-TTV CH71... 33 7.2
tr|A2F0L8|A2F0L8_TRIVA Putative uncharacterized protein OS=Trich... 33 7.2
tr|A3NEL1|A3NEL1_BURP6 Transcriptional regulator, AraC family OS... 33 9.4

>tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_173543 PE=4 SV=1
Length = 262

Score = 131 bits (330), Expect = 1e-29
Identities = 60/78 (76%), Positives = 68/78 (87%)
Frame = +1

Query: 1 FHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLW 180
FHLGYCIAIW+KDES DFEFFRTG+GLF +RLN RTG+DAY+LGLGASVGVM+W
Sbjct: 167 FHLGYCIAIWVKDESLDFEFFRTGLGLFGLLALAAVRLNARTGIDAYILGLGASVGVMVW 226

Query: 181 TGERCLVKKEGSPAGIVS 234
TGERCLVK+EG PAGIV+
Sbjct: 227 TGERCLVKREGHPAGIVA 244


>tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_84520 PE=4 SV=1
Length = 258

Score = 126 bits (317), Expect = 5e-28
Identities = 55/78 (70%), Positives = 67/78 (85%)
Frame = +1

Query: 1 FHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLW 180
FHLGYCIA+W+KD++ DFEF RTG+GLF RLN RTG+DAY+LGLGAS+GVM+W
Sbjct: 163 FHLGYCIAVWVKDDNLDFEFLRTGLGLFGLLAVSAFRLNTRTGIDAYILGLGASLGVMVW 222

Query: 181 TGERCLVKKEGSPAGIVS 234
TGERCLVKKEG+PAG+V+
Sbjct: 223 TGERCLVKKEGNPAGVVA 240


>tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 264

Score = 121 bits (303), Expect = 2e-26
Identities = 53/78 (67%), Positives = 65/78 (83%)
Frame = +1

Query: 1 FHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLW 180
F+LGYCIA+W+KD++ D +F RTG GLFC IRLNNRTG+DAY+LGLGASVGVM+W
Sbjct: 169 FNLGYCIAVWVKDDNMDNDFLRTGCGLFCLLVLAAIRLNNRTGIDAYILGLGASVGVMVW 228

Query: 181 TGERCLVKKEGSPAGIVS 234
GERC VK+E +PAGIV+
Sbjct: 229 AGERCFVKRESNPAGIVA 246


>tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_230440 PE=4 SV=1
Length = 249

Score = 107 bits (268), Expect = 2e-22
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = +1

Query: 1 FHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLW 180
FHLGYCIAIW+KD+ + EF RTG+GLF +RLN TG DA++LG+ +S+GVM+W
Sbjct: 154 FHLGYCIAIWVKDDGLNLEFIRTGLGLFFLLAVSALRLNVETGKDAHVLGIVSSLGVMVW 213

Query: 181 TGERCLVKKEGSPAGIVS 234
TGERCL+K+EGS AG+V+
Sbjct: 214 TGERCLIKREGSLAGVVA 231


>tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b PE=2
SV=1
Length = 673

Score = 33.9 bits (76), Expect = 4.2
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -2

Query: 239 KNETIPAGLPSFFTKHRSPVQSITPTDAPKPRR*ASIPVR----LFKRIAAKASRQKSPM 72
K E P+G P F+ K +P QS P+ +P P S P+ F R A KA ++ P
Sbjct: 443 KKEKSPSGSPHFYRKGTTPTQS--PSQSPGPTPPPSPPLTKKKPFFNRSAPKAIKENKP- 499

Query: 71 PVRKN 57
P +N
Sbjct: 500 PAAEN 504


>tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family
OS=Burkholderia pseudomallei 576 GN=BUC_4083 PE=4 SV=1
Length = 118

Score = 33.5 bits (75), Expect = 5.5
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2

Query: 224 PAGLPSFFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKS 78
P G P+ +TK RSP VQ TPT PR R K+ AA+ +R S
Sbjct: 68 PPGEPAAYTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 118


>tr|Q9DTD2|Q9DTD2_9VIRU Genes for ORF2, ORF1, isolate: s-TTV CH71
OS=Torque teno virus PE=4 SV=1
Length = 727

Score = 33.1 bits (74), Expect = 7.2
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3

Query: 316 SHDDSRSADVLSHELQ*KT-EQPLQQQRMKLFQLDCLLFSPSTVHLSKASPQQMLL 152
S ++ ++ + + E + KT EQ L+QQR+ FQL CL + V A P Q L+
Sbjct: 671 SQEEKKARESKAQEEEAKTLEQQLEQQRLLGFQLRCLAYQVLQVQKGHAIPPQALV 726


>tr|A2F0L8|A2F0L8_TRIVA Putative uncharacterized protein
OS=Trichomonas vaginalis G3 GN=TVAG_217710 PE=4 SV=1
Length = 244

Score = 33.1 bits (74), Expect = 7.2
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +3

Query: 225 NSFILCCCN---GCSVFYCNS*DN 287
+ FILCCC GCS YCN DN
Sbjct: 213 SGFILCCCECCKGCSCSYCNKKDN 236


>tr|A3NEL1|A3NEL1_BURP6 Transcriptional regulator, AraC family
OS=Burkholderia pseudomallei (strain 668)
GN=BURPS668_3787 PE=4 SV=1
Length = 132

Score = 32.7 bits (73), Expect = 9.4
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2

Query: 227 IPAGLPSFFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKS 78
+P G P+ TK RSP VQ TPT PR R K+ AA+ +R S
Sbjct: 81 LPPGEPAAHTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 132