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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914770
Clone id YMU001_000062_F10
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGCAAAGTCATCCCAAGATATCCATAAGTCATTAACCACTTTCTCGGAACA
ATAGTATCCCAAGAGATTAAGAACAGTAGCTCGGTTATTATGCCAAGAGCCCAAAGTAGC
TATACTTACCTTCTGAATTAATAGACCCTTGATTTCATTATACCAGCTATTGGCACCCTT
TTAAACAAAGACAGGTAATATCCGGCCAAGTTCGTGCAAGGCTTTAGTTTATTTTTTCCA
TACTGTGTAACCATCCAACGAATAACTCTATGAGAAAAAACCAGTTAAAACTACGAAAAA
ACCAGTCATTATGCCGATTTTTGCAAAGCCCTGCAGCGGCTAGAATCAGAGCCTTACGAC
CAATCGGCCATCACCAAATGCTGCTTCTATTTACATAGTCGGGACAAAAAAACAGTTCCC
GGTCAAGCAATATACATGTCCAAATGTAGCAAATGTTGAGAACGGCCATCATGCCAATCA
CTCTCACACATACATATACACACATA
■■Homology search results ■■ -
sp_hit_id Q3UHI0
Definition sp|Q3UHI0|GCA14_MOUSE Protein GCAP14 OS=Mus musculus
Align length 48
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914770|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F10.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UHI0|GCA14_MOUSE Protein GCAP14 OS=Mus musculus GN=Gcap14 P...    31   2.9  
sp|Q0HTG8|G1092_SHESR Glycosyl hydrolase family 109 protein 2 OS...    31   3.8  
sp|Q0HH61|G1092_SHESM Glycosyl hydrolase family 109 protein 2 OS...    31   3.8  
sp|A0KYQ9|G1092_SHESA Glycosyl hydrolase family 109 protein 2 OS...    31   3.8  
sp|Q10003|YRS7_CAEEL Uncharacterized protein T05H10.7 OS=Caenorh...    30   8.4  

>sp|Q3UHI0|GCA14_MOUSE Protein GCAP14 OS=Mus musculus GN=Gcap14 PE=1
           SV=1
          Length = 833

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 356 TTNRPSPNAASIYIVGTKKQFPVKQYTCPNVANVENGHHANHSHTYIY 499
           +T +P PN A++ ++GT K   VK Y   N ++    H  N   T  Y
Sbjct: 25  STLQPMPNGATVTLLGTSKSSNVKSYIKNNGSDCSLSHSFNWRKTNKY 72


>sp|Q0HTG8|G1092_SHESR Glycosyl hydrolase family 109 protein 2
           OS=Shewanella sp. (strain MR-7) GN=Shewmr7_2602 PE=3
           SV=1
          Length = 456

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -3

Query: 225 KALHELGRILPVFV*KGANSWYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKV 46
           KA++E GR  P +  KG +++ + +    +  V IAT  +WH+  A    L G +   +V
Sbjct: 96  KAINEYGRDKPAYFSKGDHAYRDLLNRDDVDIVVIATPWAWHHPMAKEAMLAGKHAFVEV 155

Query: 45  -----VNDLW 31
                + +LW
Sbjct: 156 PMAGTIEELW 165


>sp|Q0HH61|G1092_SHESM Glycosyl hydrolase family 109 protein 2
           OS=Shewanella sp. (strain MR-4) GN=Shewmr4_2535 PE=3
           SV=1
          Length = 456

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -3

Query: 225 KALHELGRILPVFV*KGANSWYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKV 46
           KA++E GR  P +  KG +++ + +    +  V IAT  +WH+  A    L G +   +V
Sbjct: 96  KAINEYGRDKPAYFSKGDHAYRDLLNRDDVDIVVIATPWAWHHPMAKEAMLAGKHAFVEV 155

Query: 45  -----VNDLW 31
                + +LW
Sbjct: 156 PMAGTIEELW 165


>sp|A0KYQ9|G1092_SHESA Glycosyl hydrolase family 109 protein 2
           OS=Shewanella sp. (strain ANA-3) GN=Shewana3_2701 PE=3
           SV=1
          Length = 456

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -3

Query: 225 KALHELGRILPVFV*KGANSWYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKV 46
           KA++E GR  P +  KG +++ + +    +  V IAT  +WH+  A    L G +   +V
Sbjct: 96  KAINEYGRDKPAYFSKGDHAYRDLLNRDDVDIVVIATPWAWHHPMAKEAMLAGKHAFVEV 155

Query: 45  -----VNDLW 31
                + +LW
Sbjct: 156 PMAGTIEELW 165


>sp|Q10003|YRS7_CAEEL Uncharacterized protein T05H10.7
           OS=Caenorhabditis elegans GN=T05H10.7 PE=2 SV=1
          Length = 796

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 93  RATVLNLLGYYCSEKVVNDLWISWDDFAQVL 1
           R   ++L GYY   K V+D W+ + D  Q+L
Sbjct: 186 RVDRVDLFGYYAGRKCVSDGWLQYPDENQIL 216
tr_hit_id Q9EU22
Definition tr|Q9EU22|Q9EU22_ECOLX Putative uncharacterized protein yclC OS=Escherichia coli
Align length 51
Score (bit) 33.9
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914770|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_F10.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9EU22|Q9EU22_ECOLX Putative uncharacterized protein yclC OS=...    34   4.6  
tr|B7UHF8|B7UHF8_ECO27 Predicted 4-hydroxybenzoate decarboxylase...    34   4.6  
tr|B7N6W8|B7N6W8_ECOLX Conserved putative non-oxidative hydroxya...    34   4.6  
tr|B1EF04|B1EF04_9ESCH 4-hydroxybenzoate decarboxylase, subunit ...    34   4.6  

>tr|Q9EU22|Q9EU22_ECOLX Putative uncharacterized protein yclC
           OS=Escherichia coli GN=yclC PE=4 SV=1
          Length = 475

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -3

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G +  +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B7UHF8|B7UHF8_ECO27 Predicted 4-hydroxybenzoate decarboxylase
           OS=Escherichia coli O127:H6 str. E2348/69
           GN=E2348_C_3008 PE=4 SV=1
          Length = 475

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -3

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G +  +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B7N6W8|B7N6W8_ECOLX Conserved putative non-oxidative
           hydroxyarylic acid decarboxylase activity OS=Escherichia
           coli GN=ECUMN_3061 PE=4 SV=1
          Length = 475

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -3

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G +  +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B1EF04|B1EF04_9ESCH 4-hydroxybenzoate decarboxylase, subunit C
           OS=Escherichia albertii TW07627 GN=kpdC PE=4 SV=1
          Length = 475

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -3

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G +  +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99