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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914775
Clone id YMU001_000062_G03
Library
Length 488
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTACAAGAAATATATCTTACTTTCTTTGGCAAAAAATAATCAGCTTACAACCAAGTAA
ATCCAATCATTAATTTGAGCCAAGAGAAAATAACTGCAAATATCATATCATGCTGTCATG
CATCTTTCAAAGAAGGAAAAAACAACACCTAGGTCCCAAACTCATATCCAATGAATCATT
TATCGTCTGTCGATTACACATGTCCTCCCTCCCTTGGACCCTTTTATTAGACTAAGATTG
TGACTACGATCGGCGACCAACTCGCACTTCTGTTGCTTTACATCCTTCGAAGTGTCAGTA
ATAAACAGCTGAAGTCACTACCGAGCTGTGAAAACTGGAGACGCATCTGCTGTTGGTTGG
GTCCTTCTTGTATATTTCAAGAGCAGAGCATCTACCGACTTTCCAGGAGCTCTCAAATCA
CCGATGTAAGGCTCGAGGTCTTGCCACTCCCACTTTGATCTTTCTCTGAAAAGTGCTGCA
AATCTTTC
■■Homology search results ■■ -
sp_hit_id P25559
Definition sp|P25559|DCC1_YEAST Sister chromatid cohesion protein DCC1 OS=Saccharomyces cerevisiae
Align length 42
Score (bit) 46.6
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914775|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_G03.
         (488 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25559|DCC1_YEAST Sister chromatid cohesion protein DCC1 OS=S...    47   6e-05
sp|Q14AI0|DCC1_MOUSE Sister chromatid cohesion protein DCC1 OS=M...    42   0.001
sp|Q66I84|DCC1_DANRE Sister chromatid cohesion protein DCC1 OS=D...    42   0.002
sp|Q6GL75|DCC1_XENTR Sister chromatid cohesion protein DCC1 OS=X...    41   0.003
sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1 OS=X...    41   0.003
sp|Q9BVC3|DCC1_HUMAN Sister chromatid cohesion protein DCC1 OS=H...    41   0.003
sp|Q55BA5|DCC1_DICDI Probable sister chromatid cohesion protein ...    37   0.048
sp|Q47334|KPSF5_ECOLX Polysialic acid capsule expression protein...    32   1.5  
sp|P42502|KPSF1_ECOLX Polysialic acid capsule expression protein...    30   4.5  
sp|Q9Y337|KLK5_HUMAN Kallikrein-5 OS=Homo sapiens GN=KLK5 PE=1 SV=1    30   5.8  

>sp|P25559|DCC1_YEAST Sister chromatid cohesion protein DCC1
           OS=Saccharomyces cerevisiae GN=DCC1 PE=1 SV=2
          Length = 380

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 18/42 (42%), Positives = 30/42 (71%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRR 363
           ERF  LFR +S+W+ +D++P I +L + G  +D+ ++KY RR
Sbjct: 327 ERFKVLFRLQSQWDLEDIKPLIEELNSRGMKIDSFIMKYARR 368


>sp|Q14AI0|DCC1_MOUSE Sister chromatid cohesion protein DCC1 OS=Mus
           musculus GN=DSCC1 PE=2 SV=1
          Length = 399

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           +RF +LF  R KW  +D+ PYI DL    +++ ALL KY+R
Sbjct: 342 DRFNSLFSLREKWTEEDITPYIQDLCGEKQTIGALLTKYSR 382


>sp|Q66I84|DCC1_DANRE Sister chromatid cohesion protein DCC1
           OS=Danio rerio GN=dscc1 PE=2 SV=1
          Length = 391

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           ERF +LF  R KW   D+EPYI DL    ++  ALL K+ R
Sbjct: 333 ERFNSLFSLREKWTQDDIEPYIQDLCGEKQTTGALLTKHAR 373


>sp|Q6GL75|DCC1_XENTR Sister chromatid cohesion protein DCC1
           OS=Xenopus tropicalis GN=dscc1 PE=2 SV=1
          Length = 391

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           ERF  LF  R KW   D+ PYI DL    +++ ALL KY R
Sbjct: 334 ERFNTLFGMREKWAEADIAPYIKDLCGEKQTIGALLTKYAR 374


>sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1
           OS=Xenopus laevis GN=dscc1 PE=2 SV=1
          Length = 390

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           ERF  LF  R KW   D+ PYI DL    +++ ALL KY R
Sbjct: 333 ERFNTLFGMREKWTEADIAPYIQDLCGEKQTIGALLTKYAR 373


>sp|Q9BVC3|DCC1_HUMAN Sister chromatid cohesion protein DCC1 OS=Homo
           sapiens GN=DSCC1 PE=1 SV=2
          Length = 393

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYT 369
           ERF +LF  R KW  +D+ PYI DL    +++ ALL KY+
Sbjct: 336 ERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYS 375


>sp|Q55BA5|DCC1_DICDI Probable sister chromatid cohesion protein
           DCC1 OS=Dictyostelium discoideum GN=DDB_G0271400 PE=3
           SV=1
          Length = 376

 Score = 37.0 bits (84), Expect = 0.048
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 485 RFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           RF  LF+  ++W   D+EP+I     PG S++  +L Y+R
Sbjct: 322 RFKELFQISTRWSIDDIEPFIKSTIPPGNSLEQFILTYSR 361


>sp|Q47334|KPSF5_ECOLX Polysialic acid capsule expression protein
           kpsF OS=Escherichia coli GN=kpsF PE=3 SV=1
          Length = 327

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 141 NNT*VPNSYPMNHLSSVDYTCPPSLGPFY*TKIVTTIGDQLALLLLYILRSVSNKQLKSL 320
           N+T   N+  +  L   + TCP +L P   T +   IGD LA+ +++  + + N   +  
Sbjct: 141 NSTLAKNADAVLELHMANETCPNNLAPTTSTTLTMAIGDALAIAMIHQRKFMPNDFARYH 200

Query: 321 PSCENWRRI 347
           P     RR+
Sbjct: 201 PGGSLGRRL 209


>sp|P42502|KPSF1_ECOLX Polysialic acid capsule expression protein
           kpsF OS=Escherichia coli GN=kpsF PE=3 SV=1
          Length = 317

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 141 NNT*VPNSYPMNHLSSVDYTCPPSLGPFY*TKIVTTIGDQLALLLLYILRSVSNKQLKSL 320
           N+T   N+  +  L   + TCP +L P   T +   IGD LA+ ++   + + N   +  
Sbjct: 141 NSTLAKNADAVLELHMANETCPNNLAPTTSTTLTMAIGDALAIAMIRQRKFMPNDFARYH 200

Query: 321 PSCENWRRI 347
           P     RR+
Sbjct: 201 PGGSLGRRL 209


>sp|Q9Y337|KLK5_HUMAN Kallikrein-5 OS=Homo sapiens GN=KLK5 PE=1 SV=1
          Length = 293

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 407 PGKSVDALLLKYTRRTQPTADASPV 333
           PG S D +L+K  RR +PT D  P+
Sbjct: 148 PGHSNDLMLIKLNRRIRPTKDVRPI 172
tr_hit_id Q0DL74
Definition tr|Q0DL74|Q0DL74_ORYSJ Os05g0119600 protein OS=Oryza sativa subsp. japonica
Align length 56
Score (bit) 92.4
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914775|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_G03.
         (488 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0DL74|Q0DL74_ORYSJ Os05g0119600 protein OS=Oryza sativa subs...    92   1e-17
tr|A3AZD7|A3AZD7_ORYSJ Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|A2XZS1|A2XZS1_ORYSI Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|B6U5N0|B6U5N0_MAIZE Protein binding protein OS=Zea mays PE=2 ...    92   1e-17
tr|B4FIU9|B4FIU9_MAIZE Putative uncharacterized protein OS=Zea m...    92   1e-17
tr|A7R1Y6|A7R1Y6_VITVI Chromosome undetermined scaffold_385, who...    84   3e-15
tr|A9RR21|A9RR21_PHYPA Predicted protein OS=Physcomitrella paten...    75   2e-12
tr|A8JA86|A8JA86_CHLRE Predicted protein (Fragment) OS=Chlamydom...    62   2e-08
tr|B3S1B1|B3S1B1_TRIAD Putative uncharacterized protein OS=Trich...    47   4e-04
tr|A7T817|A7T817_NEMVE Predicted protein (Fragment) OS=Nematoste...    47   5e-04
tr|A7SXS6|A7SXS6_NEMVE Predicted protein OS=Nematostella vectens...    47   5e-04
tr|B3LU61|B3LU61_YEAS1 Sister chromatid cohesion protein DCC1 OS...    47   6e-04
tr|A6ZTH0|A6ZTH0_YEAS7 Conserved protein OS=Saccharomyces cerevi...    47   6e-04
tr|Q9LIW8|Q9LIW8_ORYSA Similar to a putative RING zinc finger pr...    45   0.002
tr|A4SAU7|A4SAU7_OSTLU Predicted protein OS=Ostreococcus lucimar...    45   0.002
tr|Q6CS08|Q6CS08_KLULA KLLA0D04972p OS=Kluyveromyces lactis GN=K...    45   0.002
tr|A7TGM8|A7TGM8_VANPO Putative uncharacterized protein OS=Vande...    45   0.002
tr|O80498|O80498_ARATH Putative RING zinc finger protein OS=Arab...    44   0.004
tr|B5XCA8|B5XCA8_SALSA Sister chromatid cohesion protein DCC1 OS...    43   0.007
tr|B2G4C2|B2G4C2_ZYGRO Sister chromatid cohesion protein DCC1 OS...    43   0.007
tr|Q8C1P7|Q8C1P7_MOUSE Putative uncharacterized protein OS=Mus m...    42   0.015
tr|B6JWM8|B6JWM8_SCHJP Sister chromatid cohesion protein dcc1 OS...    41   0.026
tr|B7P6D1|B7P6D1_IXOSC Putative uncharacterized protein OS=Ixode...    40   0.045
tr|A8NXP4|A8NXP4_COPC7 Putative uncharacterized protein OS=Copri...    40   0.045
tr|Q4SH66|Q4SH66_TETNG Chromosome 8 SCAF14587, whole genome shot...    40   0.076
tr|Q4P4P9|Q4P4P9_USTMA Putative uncharacterized protein OS=Ustil...    40   0.076
tr|A3M0K8|A3M0K8_PICST Predicted protein OS=Pichia stipitis GN=P...    40   0.076
tr|Q4V3Z5|Q4V3Z5_DROME CG11788 OS=Drosophila melanogaster GN=CG1...    39   0.13 
tr|B4QEL7|B4QEL7_DROSI GD11503 OS=Drosophila simulans GN=Dsim\GD...    39   0.13 
tr|B4PAN1|B4PAN1_DROYA GE12100 OS=Drosophila yakuba GN=GE12100 P...    39   0.13 

>tr|Q0DL74|Q0DL74_ORYSJ Os05g0119600 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0119600 PE=4 SV=1
          Length = 168

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 40/56 (71%), Positives = 49/56 (87%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADASPVFTAR 321
           +RFAALF+ER KWEW+DL+PYI DLR PG S + LL+KYTR+TQP+ADA P+FTAR
Sbjct: 113 DRFAALFQERPKWEWKDLQPYIRDLRVPGVSSEGLLIKYTRKTQPSADAEPIFTAR 168


>tr|A3AZD7|A3AZD7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016159 PE=4 SV=1
          Length = 403

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 40/56 (71%), Positives = 49/56 (87%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADASPVFTAR 321
           +RFAALF+ER KWEW+DL+PYI DLR PG S + LL+KYTR+TQP+ADA P+FTAR
Sbjct: 348 DRFAALFQERPKWEWKDLQPYIRDLRVPGVSSEGLLIKYTRKTQPSADAEPIFTAR 403


>tr|A2XZS1|A2XZS1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18234 PE=4 SV=1
          Length = 403

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 40/56 (71%), Positives = 49/56 (87%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADASPVFTAR 321
           +RFAALF+ER KWEW+DL+PYI DLR PG S + LL+KYTR+TQP+ADA P+FTAR
Sbjct: 348 DRFAALFQERPKWEWKDLQPYIRDLRVPGVSSEGLLIKYTRKTQPSADAEPIFTAR 403


>tr|B6U5N0|B6U5N0_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 404

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADASPVFTAR 321
           ERFAALFRER+KWEW+DL+PYI DL  PG S + LL+KYTRR+QP A+A P+FTAR
Sbjct: 349 ERFAALFRERAKWEWKDLQPYIRDLHVPGASSEGLLIKYTRRSQPNAEAEPIFTAR 404


>tr|B4FIU9|B4FIU9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 403

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADASPVFTAR 321
           ERFAALFRER+KWEW+DL+PYI DL  PG S + LL+KYTRR+QP A+A P+FTAR
Sbjct: 348 ERFAALFRERAKWEWKDLQPYIRDLHVPGASSEGLLIKYTRRSQPNAEAEPIFTAR 403


>tr|A7R1Y6|A7R1Y6_VITVI Chromosome undetermined scaffold_385, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012489001 PE=4 SV=1
          Length = 378

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 37/55 (67%), Positives = 45/55 (81%)
 Frame = -1

Query: 485 RFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADASPVFTAR 321
           RF+ LF+ER KWEW+DL+PYI DL  PG S + LLLKYTR+TQP +DA PVF+AR
Sbjct: 324 RFSMLFQERPKWEWKDLQPYIRDLTVPGLSSEGLLLKYTRKTQPNSDAEPVFSAR 378


>tr|A9RR21|A9RR21_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_69441 PE=4 SV=1
          Length = 401

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 31/56 (55%), Positives = 45/56 (80%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADASPVFTAR 321
           ERF+ALF+E  KWEW DLEPY+  ++APG+SV+A+LL+YTR+TQ + +   ++T R
Sbjct: 346 ERFSALFKENPKWEWDDLEPYLRGMQAPGQSVEAMLLRYTRKTQISPNVPAMYTPR 401


>tr|A8JA86|A8JA86_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_151985 PE=4
           SV=1
          Length = 475

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 24/56 (42%), Positives = 40/56 (71%)
 Frame = -1

Query: 488 ERFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTADASPVFTAR 321
           +RF+ LF  R +W W DLEP++  ++ PG+S +A+LL++ R +Q T D+  ++TAR
Sbjct: 420 QRFSLLFTVRPRWAWTDLEPFLAGIKVPGQSAEAVLLRFARASQATPDSPLMYTAR 475


>tr|B3S1B1|B3S1B1_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_58261 PE=4 SV=1
          Length = 373

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = -1

Query: 485 RFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTR 366
           RF  LF+ R+KW  +++EPYI DL    +S++ +LLKYTR
Sbjct: 301 RFNKLFKVRTKWSLEEIEPYIKDLATGSQSLNTILLKYTR 340


>tr|A7T817|A7T817_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g149608 PE=4 SV=1
          Length = 136

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/46 (43%), Positives = 32/46 (69%)
 Frame = -1

Query: 485 RFAALFRERSKWEWQDLEPYIGDLRAPGKSVDALLLKYTRRTQPTA 348
           RF  LF+ R+KW + +++PYI DL   G+ +++LLLKY R ++  A
Sbjct: 80  RFNKLFKTRNKWTFDEIQPYIRDLVGTGQPLNSLLLKYARSSKDDA 125