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NBDC - LSDB Archive
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BP914782
Clone id YMU001_000062_G11
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTCGAGTAACACGACTGGAATGAATCTTTGGACTTTCTTGGAGGTGATCTTCACTTAACT
TTGTTGGGTAGTCTGGTAGAATTTTGATTTCATTACCCAGACTTGTCGTATGGTTTGTCC
AGTGGAAGACCTTCTCTTTTGCTTTTTGTACCTGTCCTTTCTCTTGGTTGAGTTATGTGA
TGGACGTTGACGGCTTTGTTGATTCCTGACTGAGTGGTTGGCATGGGATGGATATCGCCA
GGCTGTTATCTTGGGCTTGTTGACCCAAACATCTGAATTTCCTTTCTTGTAGCCTTGTGC
AATAATTGACTCGCTTGATGTGATCCATCTTGTTACCTTTGCTTGTTGAGGTTGTTCCTG
TGATTGTATCCAAATTGGATCATTAACTTTAATCTGTGCCTTGGATACTAGCACTTGGTT
GACCTGTTTTGACTTCCTTTGGAGACTTTCGGGCGATGGAAACTTTGGTTGCTAGACTTT
TTGCTTGGGTTTCCATTGT
■■Homology search results ■■ -
sp_hit_id Q9S9M8
Definition sp|Q9S9M8|TLP8_ARATH Tubby-like protein 8 OS=Arabidopsis thaliana
Align length 105
Score (bit) 34.7
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914782|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_G11.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9S9M8|TLP8_ARATH Tubby-like protein 8 OS=Arabidopsis thalian...    35   0.25 
sp|P39970|YEN5_YEAST Uncharacterized protein YER045C OS=Saccharo...    31   2.8  
sp|P16218|GUNH_CLOTH Endoglucanase H OS=Clostridium thermocellum...    31   3.7  
sp|O10684|GLYC_BRSV4 Major surface glycoprotein G OS=Bovine resp...    30   4.8  
sp|Q8VDG7|PAFA2_MOUSE Platelet-activating factor acetylhydrolase...    30   8.2  
sp|Q8F935|GCST_LEPIN Aminomethyltransferase OS=Leptospira interr...    30   8.2  
sp|Q72VI6|GCST_LEPIC Aminomethyltransferase OS=Leptospira interr...    30   8.2  

>sp|Q9S9M8|TLP8_ARATH Tubby-like protein 8 OS=Arabidopsis thaliana
           GN=TULP8 PE=2 SV=1
          Length = 397

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
 Frame = -1

Query: 376 NLDTITGTTSTSKGNKMDHIKRVNYCTRLQERKF-RCLGQQAQDNSLAISIPCQPLSQES 200
           N+DTITG+ ST KG   +++      T ++ RK  R L  Q+   +             S
Sbjct: 17  NVDTITGSLSTQKGEDKENVSPEKVSTSVETRKLDRALKSQSMKGNSGFPTEVTNFKSFS 76

Query: 199 TKPST-----SIT*LNQEKGQVQKAKEKVFHWTNHTTSLGNEIKI 80
           T   T     S+    Q+  +V K+   +  WT+  +   + +K+
Sbjct: 77  TGGRTALKQSSLQACMQKNSEVDKSSFGMKTWTSVDSEHSSSLKV 121


>sp|P39970|YEN5_YEAST Uncharacterized protein YER045C
           OS=Saccharomyces cerevisiae GN=YER045C PE=1 SV=1
          Length = 489

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 23/89 (25%), Positives = 35/89 (39%)
 Frame = -1

Query: 370 DTITGTTSTSKGNKMDHIKRVNYCTRLQERKFRCLGQQAQDNSLAISIPCQPLSQESTKP 191
           D  + T S   G+   +   +N   RLQ +    +  +A  N+     PC P S  S   
Sbjct: 209 DIPSATPSIPSGDSTMNQAYINMQLRLQAQ----MQTKAWKNAQLNVHPCTPASNSSVSS 264

Query: 190 STSIT*LNQEKGQVQKAKEKVFHWTNHTT 104
           S+S   +N    + Q     + H  NH T
Sbjct: 265 SSSCQNINDHNIENQSVHSSISHGVNHHT 293


>sp|P16218|GUNH_CLOTH Endoglucanase H OS=Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237) GN=celH PE=1 SV=1
          Length = 900

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 402 KAQIKVNDPIWIQSQEQPQ-QAKVTRWITSSESIIAQGYKKGNSDVWVNKPKITAWRYPS 226
           +A   +N PI I      +      RWIT + + I   Y K  + VW ++ K T WR  S
Sbjct: 231 QALASINKPIIIAEFASAEIGGNKARWITEAYNSIRTSYNKVIAAVWFHENKETDWRINS 290


>sp|O10684|GLYC_BRSV4 Major surface glycoprotein G OS=Bovine
           respiratory syncytial virus (strain 4642) GN=G PE=2 SV=1
          Length = 263

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 25/177 (14%)
 Frame = -1

Query: 499 TMETQAKSLATKVSIARKSPKEVKTGQPSASIQGTD*S**SNLDTITGTTSTSKGNKMDH 320
           T +TQ     T   +   + K   T     SIQ T  S   N+DT +GTT     N+  +
Sbjct: 77  TQQTQQLQNHTPPPLTEHNYKSTHT-----SIQSTTLSQPPNIDTTSGTTYGHPTNRTQN 131

Query: 319 IKRVNYCTRLQERK--FRCLG----QQAQDNSLAISIP------------CQPLSQ---- 206
            K  +  T L  RK     LG    +  QD++ + ++P            C PL Q    
Sbjct: 132 RKIKSQSTPLATRKPPINPLGSNPPENHQDHNNSQTLPHVPCSTCEGNPACSPLCQIELE 191

Query: 205 --ESTKPSTSIT*LNQEKGQVQKAKEKVFHWTNHTTSL-GNEIKILPDYPTKLSEDH 44
              S+ P+ ++    + K   +  K  ++H T+    L   +I + P      S +H
Sbjct: 192 RAPSSAPTITLKKAPKPKTTKKPTKTTIYHRTSPEAKLQTKKIMVTPQQGILSSPEH 248


>sp|Q8VDG7|PAFA2_MOUSE Platelet-activating factor acetylhydrolase 2,
           cytoplasmic OS=Mus musculus GN=Pafah2 PE=2 SV=1
          Length = 390

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 304 YCTRLQERKFRCLGQQAQDNSLAISIPCQPLSQESTKPSTSIT*LNQEKGQVQKAK--EK 131
           +C  L  R F     + +D S A +  C+P SQES+ P+ S   L +E    ++ K  EK
Sbjct: 119 FCMELASRGFVVAAVEHRDQSAAATYFCKPTSQESS-PAES---LEEEWLPFRRIKEGEK 174

Query: 130 VFHWTN 113
            FH  N
Sbjct: 175 EFHVRN 180


>sp|Q8F935|GCST_LEPIN Aminomethyltransferase OS=Leptospira
           interrogans GN=gcvT PE=3 SV=2
          Length = 371

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 429 KQVNQVLVSKAQIKVNDPIWIQSQEQPQQAKVT 331
           K +   L+   +IK  +PI I+ +EQP+QA +T
Sbjct: 327 KGIGLALIQSEKIKDGEPIQIEIREQPKQAIIT 359


>sp|Q72VI6|GCST_LEPIC Aminomethyltransferase OS=Leptospira
           interrogans serogroup Icterohaemorrhagiae serovar
           copenhageni GN=gcvT PE=3 SV=2
          Length = 371

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 429 KQVNQVLVSKAQIKVNDPIWIQSQEQPQQAKVT 331
           K +   L+   +IK  +PI I+ +EQP+QA +T
Sbjct: 327 KGIGLALIQSEKIKDGEPIQIEIREQPKQAIIT 359
tr_hit_id B0W5F5
Definition tr|B0W5F5|B0W5F5_CULQU Putative uncharacterized protein OS=Culex quinquefasciatus
Align length 116
Score (bit) 35.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914782|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_G11.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0W5F5|B0W5F5_CULQU Putative uncharacterized protein OS=Culex...    35   2.0  
tr|B0W5F4|B0W5F4_CULQU Putative uncharacterized protein OS=Culex...    35   2.0  
tr|Q2V4M9|Q2V4M9_ARATH Uncharacterized protein At1g16070.2 OS=Ar...    35   2.6  
tr|B3RGK4|B3RGK4_9CAUD Terminase large subunit OS=Escherichia ph...    33   5.7  
tr|B0W5F6|B0W5F6_CULQU Putative uncharacterized protein OS=Culex...    33   5.7  
tr|A8IY15|A8IY15_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   9.7  
tr|Q8MSU4|Q8MSU4_DROME CG2097 OS=Drosophila melanogaster GN=CG20...    33   9.7  
tr|A2QG39|A2QG39_ASPNC Contig An03c0060, complete genome OS=Aspe...    33   9.7  
tr|Q4X7M5|Q4X7M5_PLACH Putative uncharacterized protein (Fragmen...    33   9.8  
tr|B6L0Y0|B6L0Y0_BRAFL Putative uncharacterized protein OS=Branc...    33   9.8  

>tr|B0W5F5|B0W5F5_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ002274 PE=4 SV=1
          Length = 630

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
 Frame = -3

Query: 482 KKSSNQSFHRPKVSKGSQNRSTKC*YPRHRLKLMIQFGYNHRNNLNKQR*QDGSHQASQL 303
           K++  +SF++P ++   Q +     Y            Y+HR+N N Q       Q  Q 
Sbjct: 372 KQNGTESFYQPSINGYHQQQHVMPPY------------YHHRSNSNGQLYGQPQQQQQQQ 419

Query: 302 LHKATRKEIQM---FGSTSPR*QPGDIHPMPTTQSGINKAVNV--HHITQPRERTG 150
            H+ T  EI M   F ST P   P  +    ++    +  V    HH  +P+   G
Sbjct: 420 SHRHTAAEIYMNHNFDSTGPPLPPSILSKKKSSYDDYDVPVPARHHHPVEPKTHAG 475


>tr|B0W5F4|B0W5F4_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ002273 PE=4 SV=1
          Length = 682

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
 Frame = -3

Query: 482 KKSSNQSFHRPKVSKGSQNRSTKC*YPRHRLKLMIQFGYNHRNNLNKQR*QDGSHQASQL 303
           K++  +SF++P ++   Q +     Y            Y+HR+N N Q       Q  Q 
Sbjct: 222 KQNGTESFYQPSINGYHQQQHVMPPY------------YHHRSNSNGQLYGQPQQQQQQQ 269

Query: 302 LHKATRKEIQM---FGSTSPR*QPGDIHPMPTTQSGINKAVNV--HHITQPRERTG 150
            H+ T  EI M   F ST P   P  +    ++    +  V    HH  +P+   G
Sbjct: 270 SHRHTAAEIYMNHNFDSTGPPLPPSILSKKKSSYDDYDVPVPARHHHPVEPKTHAG 325


>tr|Q2V4M9|Q2V4M9_ARATH Uncharacterized protein At1g16070.2
           OS=Arabidopsis thaliana GN=At1g16070 PE=4 SV=1
          Length = 398

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
 Frame = -1

Query: 376 NLDTITGTTSTSKGNKMDHIKRVNYCTRLQERKF-RCLGQQAQDNSLAISIPCQPLSQES 200
           N+DTITG+ ST KG   +++      T ++ RK  R L  Q+   +             S
Sbjct: 17  NVDTITGSLSTQKGEDKENVSPEKVSTSVETRKLDRALKSQSMKGNSGFPTEVTNFKSFS 76

Query: 199 TKPST-----SIT*LNQEKGQVQKAKEKVFHWTNHTTSLGNEIKI 80
           T   T     S+    Q+  +V K+   +  WT+  +   + +K+
Sbjct: 77  TGGRTALKQSSLQACMQKNSEVDKSSFGMKTWTSVDSEHSSSLKV 121


>tr|B3RGK4|B3RGK4_9CAUD Terminase large subunit OS=Escherichia phage
           rv5 PE=4 SV=1
          Length = 515

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 22/74 (29%), Positives = 43/74 (58%)
 Frame = -2

Query: 438 RKSKQVNQVLVSKAQIKVNDPIWIQSQEQPQQAKVTRWITSSESIIAQGYKKGNSDVWVN 259
           +K+ + + ++  +AQ   +D I + S + P QA  + ++TSS S++A+G++     +  N
Sbjct: 368 KKAGERDVIIRKQAQFDGDDCIIVFSVD-PGQAGKSEFLTSSRSLLAEGFRVEEDPMPSN 426

Query: 258 KPKITAWRYPSHAN 217
           K K+T  R+   AN
Sbjct: 427 KSKLT--RFSPFAN 438


>tr|B0W5F6|B0W5F6_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ002275 PE=4 SV=1
          Length = 496

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
 Frame = -3

Query: 482 KKSSNQSFHRPKVSKGSQNRSTKC*YPRHRLKLMIQFGYNHRNNLNKQR*QDGSHQASQL 303
           K++  +SF++P ++   Q +     Y            Y+HR+N N Q       +  Q 
Sbjct: 36  KQNGTESFYQPSINGYHQQQHVMPPY------------YHHRSNSNGQLYGQQQQKQQQQ 83

Query: 302 LHKATRKEIQM---FGSTSPR*QPGDIHPMPTTQSGINKAVNV--HHITQPRERTG 150
            H+ T  EI M   F ST P   P  +    ++    +  V    HH  +P+   G
Sbjct: 84  SHRHTAAEIYMNHNFDSTGPPLPPSILSKKKSSYDDYDVPVPARHHHPVEPKTHAG 139


>tr|A8IY15|A8IY15_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CGLD20 PE=4 SV=1
          Length = 497

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 16/73 (21%), Positives = 38/73 (52%)
 Frame = -2

Query: 243 AWRYPSHANHSVRNQQSRQRPSHNSTXXXXXXXXXXXRSSTGQTIRQVWVMKSKFYQTTQ 64
           AW+ P+HA  +++ QQ +Q+ +H++            ++   Q  +Q+ +M+ +  Q  Q
Sbjct: 297 AWQDPTHAAAALKQQQLQQQQAHSAAGADGAATTVQEQTQMQQMQQQLLMMQQRMQQLQQ 356

Query: 63  QS*VKITSKKVQR 25
           Q   +   ++V++
Sbjct: 357 QQQQQTPDREVKQ 369


>tr|Q8MSU4|Q8MSU4_DROME CG2097 OS=Drosophila melanogaster GN=CG2097
           PE=2 SV=1
          Length = 1165

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = -1

Query: 292 LQERKFRCLGQQAQDNSLAISIPCQPLSQESTKPSTSIT*LNQEKGQVQKAKEKVF--HW 119
           +  R+ R L   AQ  +    + C+   Q+  +       L ++K +  +  EK    H+
Sbjct: 338 MARRQKRILENAAQSLAKRARLACEQQDQQQREMELDTEELERQKQKSTRVNEKFLAEHF 397

Query: 118 TNHTTSLGNEIKILPDYPTKLSEDHLQESPKIHSSRV 8
            N  T +   ++ LP  PT++ +  LQE   I    +
Sbjct: 398 RNPETVVTLVLEFLPSLPTEVPQKFLQEYTPIREMSI 434


>tr|A2QG39|A2QG39_ASPNC Contig An03c0060, complete genome
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An03g01760 PE=4 SV=1
          Length = 725

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 316 KRVNYCTRLQERKFRCLGQQAQDNSLAISIPCQPLSQESTKPSTSIT*LNQE 161
           KR N C   ++RK +CLG+   D  L I   C  + +   +   ++  + QE
Sbjct: 36  KRTNACEACKKRKTKCLGELPCDKCLQIGTECHFVEESDRRRKLALRRIEQE 87


>tr|Q4X7M5|Q4X7M5_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC302311.00.0 PE=4 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 218 TTQSGINKAVNVHHITQPRERTGTKSKREGLPLDKPYDKSG 96
           T ++G    +N H I +  E TG+     G  +DK Y+ +G
Sbjct: 133 TAKAGYGNNMNTHKIDKKHEATGSADNHNGYKIDKKYEATG 173


>tr|B6L0Y0|B6L0Y0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_117556 PE=4 SV=1
          Length = 986

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 24/87 (27%), Positives = 39/87 (44%)
 Frame = -3

Query: 404 PRHRLKLMIQFGYNHRNNLNKQR*QDGSHQASQLLHKATRKEIQMFGSTSPR*QPGDIHP 225
           P  +L+   ++GYN+R +  + R  D    ++      TR++     S SP   P  +H 
Sbjct: 276 PPQQLERTYKYGYNYRPDAERNRLSDMLETSTNFQQAPTRQD--RLRSASPTTVPSHLHL 333

Query: 224 MPTTQSGINKAVNVHHITQPRERTGTK 144
            P    G  K  + H  T P+E  GT+
Sbjct: 334 FP---EGKEKGKHEHSHT-PKEDAGTE 356