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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914787
Clone id YMU001_000062_H04
Library
Length 310
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGACGACCAGGTCTGACCATGAGTCATGATGGAAGAAATTGGGCAAGGATAGAAGGAGA
TCATTACAGTGGGTCACTTTTTGATGTAGGTGGAGAAGGAGAGTGGGACTTTTTGTTCAT
TGCTGATCCCCATGTTGTTTACGTTAATACAGATGATCTGAGGCTTTATTATCACTCTTT
TGATCTTACAACTGGTTGCTTCAGCGTTGGTTATGCAAGGTCTCGTGACGCTATGAAATG
GATCAAGTTTGGAAAAATTCTATGAGGGGGTCCTCCTGGTTCTTTCGACGAACTGGGCGT
TAAGTCTCCT
■■Homology search results ■■ -
sp_hit_id Q07878
Definition sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae
Align length 47
Score (bit) 28.9
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914787|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H04.
         (310 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protei...    29   8.3  
sp|Q9CZ57|NSUN4_MOUSE Putative methyltransferase NSUN4 OS=Mus mu...    29   8.3  
sp|Q96CB9|NSUN4_HUMAN Putative methyltransferase NSUN4 OS=Homo s...    29   8.3  
sp|Q0V8R7|NSUN4_BOVIN Putative methyltransferase NSUN4 OS=Bos ta...    29   8.3  

>sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protein 13
            OS=Saccharomyces cerevisiae GN=VPS13 PE=1 SV=1
          Length = 3144

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
 Frame = -1

Query: 220  PCITNAEATSCKIKRVIIKPQ-IICINVNNMGI------SNEQKVPL 101
            PC  N+EA S KI + ++  Q I+ +  NN+GI      S+E+K+ L
Sbjct: 1580 PCDMNSEAISFKIGQFLVTDQNIMTVAANNVGIFLFKMNSSEEKLRL 1626


>sp|Q9CZ57|NSUN4_MOUSE Putative methyltransferase NSUN4 OS=Mus
           musculus GN=Nsun4 PE=2 SV=1
          Length = 381

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 23  SHDGRNWARIEGDHYSGSLFDV 88
           S DGR W  +EGD Y   L DV
Sbjct: 232 SWDGRKWGELEGDTYDRVLVDV 253


>sp|Q96CB9|NSUN4_HUMAN Putative methyltransferase NSUN4 OS=Homo
           sapiens GN=NSUN4 PE=1 SV=2
          Length = 384

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 23  SHDGRNWARIEGDHYSGSLFDV 88
           S DGR W  +EGD Y   L DV
Sbjct: 235 SWDGRKWGELEGDTYDRVLVDV 256


>sp|Q0V8R7|NSUN4_BOVIN Putative methyltransferase NSUN4 OS=Bos
           taurus GN=NSUN4 PE=2 SV=2
          Length = 384

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 23  SHDGRNWARIEGDHYSGSLFDV 88
           S DGR W  +EGD Y   L DV
Sbjct: 235 SWDGRKWGELEGDTYDRVLVDV 256
tr_hit_id A9T5Q3
Definition tr|A9T5Q3|A9T5Q3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 99
Score (bit) 155.0
E-value 1.0e-36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914787|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H04.
         (310 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T5Q3|A9T5Q3_PHYPA Predicted protein (Fragment) OS=Physcomit...   155   1e-36
tr|Q6F2D9|Q6F2D9_SOLDE T24P13.14, putative OS=Solanum demissum G...   147   3e-34
tr|A7QSL1|A7QSL1_VITVI Chromosome undetermined scaffold_161, who...   144   3e-33
tr|Q9LQX6|Q9LQX6_ARATH T24P13.14 OS=Arabidopsis thaliana PE=4 SV=1    136   5e-31
tr|Q93ZE3|Q93ZE3_ARATH At1g26760/T24P13_13 OS=Arabidopsis thalia...   136   5e-31
tr|A7QSL3|A7QSL3_VITVI Chromosome undetermined scaffold_161, who...   135   8e-31
tr|A5BWQ1|A5BWQ1_VITVI Putative uncharacterized protein OS=Vitis...   135   8e-31
tr|B4FDS0|B4FDS0_MAIZE Putative uncharacterized protein OS=Zea m...   110   4e-23
tr|B6TJG8|B6TJG8_MAIZE Putative uncharacterized protein OS=Zea m...   110   5e-23
tr|Q6ZA95|Q6ZA95_ORYSJ Os08g0433300 protein OS=Oryza sativa subs...   107   3e-22
tr|A2YVH9|A2YVH9_ORYSI Putative uncharacterized protein OS=Oryza...   107   3e-22
tr|A4SAI6|A4SAI6_OSTLU Predicted protein (Fragment) OS=Ostreococ...   100   3e-20
tr|A8HVN7|A8HVN7_CHLRE Transcriptional regulator-like protein OS...    95   2e-18
tr|A0ZAB7|A0ZAB7_NODSP Putative lipoprotein OS=Nodularia spumige...    90   6e-17
tr|Q00RU8|Q00RU8_OSTTA Predicted histone tail methylase containi...    89   1e-16
tr|B4VV39|B4VV39_9CYAN Glycosyl hydrolases family 32 OS=Microcol...    77   3e-13
tr|B8G5M0|B8G5M0_9CHLR Laminin G, domain-containing 2 OS=Chlorof...    56   8e-07
tr|A9TTG7|A9TTG7_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|A9NZW4|A9NZW4_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|A9NZS0|A9NZS0_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|A9RG92|A9RG92_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|A5V013|A5V013_ROSS1 Laminin G, sub domain 2 OS=Roseiflexus sp...    50   4e-05
tr|A9SAS7|A9SAS7_PHYPA Predicted protein OS=Physcomitrella paten...    50   7e-05
tr|Q01Q75|Q01Q75_SOLUE Glycosyl hydrolase family 32, N terminal ...    49   1e-04
tr|A7NGT8|A7NGT8_ROSCS Laminin G sub domain 2 OS=Roseiflexus cas...    47   4e-04
tr|A9WBZ5|A9WBZ5_CHLAA Laminin G, sub domain 2 OS=Chloroflexus a...    47   6e-04
tr|B2QJR4|B2QJR4_9CHLR Laminin G sub domain 2 OS=Chloroflexus sp...    46   0.001
tr|A9WBZ6|A9WBZ6_CHLAA Laminin G sub domain 2 OS=Chloroflexus au...    45   0.002
tr|B8C965|B8C965_THAPS Predicted protein OS=Thalassiosira pseudo...    45   0.002
tr|A7NGL2|A7NGL2_ROSCS Conserved repeat domain OS=Roseiflexus ca...    44   0.005

>tr|A9T5Q3|A9T5Q3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_32627 PE=4 SV=1
          Length = 358

 Score =  155 bits (392), Expect = 1e-36
 Identities = 69/99 (69%), Positives = 82/99 (82%)
 Frame = +2

Query: 5   RPGLTMSHDGRNWARIEGDHYSGSLFDVGGEGEWDFLFIADPHVVYVNTDDLRLYYHSFD 184
           RPGL +S+DGRNWAR+EGDH+SG+LFDVG EGEWD L IA P VV+    D+R+YYHS D
Sbjct: 152 RPGLAISNDGRNWARVEGDHHSGALFDVGAEGEWDSLLIAAPQVVFHEAGDIRMYYHSLD 211

Query: 185 LTTGCFSVGYARSRDAMKWIKFGKIL*GGPPGSFDELGV 301
             TG +SVG+ARSRDAM+W+KFGKIL GG PGSFDE G+
Sbjct: 212 PNTGKYSVGFARSRDAMRWLKFGKILEGGGPGSFDEFGI 250


>tr|Q6F2D9|Q6F2D9_SOLDE T24P13.14, putative OS=Solanum demissum
           GN=SDM1_49t00008 PE=4 SV=1
          Length = 445

 Score =  147 bits (371), Expect = 3e-34
 Identities = 67/102 (65%), Positives = 82/102 (80%), Gaps = 1/102 (0%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGEWDFLFIADPHVVYVNTDDLRLYYHSFDL 187
           PGL MS DGR+WARIEG+H+SG+LFDVG +GEWD LFI  P VVY ++ DLR+YYHS+D+
Sbjct: 230 PGLAMSQDGRHWARIEGEHHSGALFDVGLDGEWDSLFIGSPKVVYHSSGDLRMYYHSYDI 289

Query: 188 TTGCFSVGYARSRDAMKWIKFGKIL*GGPP-GSFDELGVKSP 310
             GCF++G ARSRD MKW+K GKI+ GG   G FDELGV +P
Sbjct: 290 EKGCFAIGIARSRDGMKWLKLGKIIGGGGGIGGFDELGVLNP 331



 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 71  GSLFDVGGEGEWDFLFIADPHVV-YVNTDDLRLY--YHSFDLTTGCFSVGYARSRDAMKW 241
           G +FD+G +  WD   I  P V  Y++ D+ R Y  YH      G  S+G A S + + W
Sbjct: 93  GLVFDLGQKDSWDSSEIGSPVVKRYLSDDEERWYMWYHGRGSDGGKESIGLAVSSNGVHW 152


>tr|A7QSL1|A7QSL1_VITVI Chromosome undetermined scaffold_161, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005912001 PE=4 SV=1
          Length = 470

 Score =  144 bits (362), Expect = 3e-33
 Identities = 66/98 (67%), Positives = 77/98 (78%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGEWDFLFIADPHVVYVNTDDLRLYYHSFDL 187
           PGL  S DGR+WARIEGDH+SG+L DVG  GEWD LFIA P VV  ++DDLR+YYHSFD+
Sbjct: 259 PGLACSQDGRHWARIEGDHHSGALLDVGSRGEWDSLFIAAPQVVVHSSDDLRMYYHSFDV 318

Query: 188 TTGCFSVGYARSRDAMKWIKFGKIL*GGPPGSFDELGV 301
             G F VG ARSRD ++W+K GKI+ GG  GSFDELGV
Sbjct: 319 ERGQFGVGIARSRDGIRWVKLGKIMEGGSNGSFDELGV 356



 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +2

Query: 71  GSLFDVGGEGEWDFLFIADPHVV-YVNTDDLRLY--YHSF-DLTTGCFSVGYARSRDAMK 238
           G +FD+G    WD   I  P +  Y+  D+ R Y  YH   D    C S+G A S + + 
Sbjct: 121 GLVFDLGSRNSWDSAEIGSPIIKRYIGDDEERWYMWYHGRPDGNNTCDSIGVAVSSNGIH 180

Query: 239 WIK 247
           W +
Sbjct: 181 WAR 183


>tr|Q9LQX6|Q9LQX6_ARATH T24P13.14 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 969

 Score =  136 bits (343), Expect = 5e-31
 Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 5/106 (4%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGEWDFLFIADPHVVYVNTDDLRLYYHSFDL 187
           PGL +S DGR+WARIEG+H+SG+LFDVG E +WDFL+IA PHVV+    DLR+YYHSFD 
Sbjct: 226 PGLAISQDGRHWARIEGEHHSGALFDVGSEKDWDFLYIASPHVVFHGDGDLRMYYHSFDE 285

Query: 188 TTGCFSVGYARSRDAMKWIKFGKIL*GGPP-----GSFDELGVKSP 310
            TG F +G ARSRD +KW+K GKIL G        G FDELG + P
Sbjct: 286 KTGEFCIGMARSRDGIKWLKLGKILGGRKSEKDGLGFFDELGGRYP 331


>tr|Q93ZE3|Q93ZE3_ARATH At1g26760/T24P13_13 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 444

 Score =  136 bits (343), Expect = 5e-31
 Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 5/106 (4%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGEWDFLFIADPHVVYVNTDDLRLYYHSFDL 187
           PGL +S DGR+WARIEG+H+SG+LFDVG E +WDFL+IA PHVV+    DLR+YYHSFD 
Sbjct: 226 PGLAISQDGRHWARIEGEHHSGALFDVGSEKDWDFLYIASPHVVFHGDGDLRMYYHSFDE 285

Query: 188 TTGCFSVGYARSRDAMKWIKFGKIL*GGPP-----GSFDELGVKSP 310
            TG F +G ARSRD +KW+K GKIL G        G FDELG + P
Sbjct: 286 KTGEFCIGMARSRDGIKWLKLGKILGGRKSEKDGLGFFDELGGRYP 331


>tr|A7QSL3|A7QSL3_VITVI Chromosome undetermined scaffold_161, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005915001 PE=4 SV=1
          Length = 491

 Score =  135 bits (341), Expect = 8e-31
 Identities = 59/98 (60%), Positives = 77/98 (78%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGEWDFLFIADPHVVYVNTDDLRLYYHSFDL 187
           PGL +S DGR+WARIEG+H++G+LFDVG E EWD ++IA P VV+    DLR+YYHSFD+
Sbjct: 278 PGLAISQDGRHWARIEGEHHTGALFDVGLENEWDSMYIASPQVVFHGNGDLRMYYHSFDV 337

Query: 188 TTGCFSVGYARSRDAMKWIKFGKIL*GGPPGSFDELGV 301
             G F++G ARS+D ++W+K GKI+ GG  GSFDE GV
Sbjct: 338 ENGQFAIGIARSKDGIRWVKLGKIMGGGISGSFDESGV 375


>tr|A5BWQ1|A5BWQ1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039508 PE=4 SV=1
          Length = 531

 Score =  135 bits (341), Expect = 8e-31
 Identities = 59/98 (60%), Positives = 77/98 (78%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGEWDFLFIADPHVVYVNTDDLRLYYHSFDL 187
           PGL +S DGR+WARIEG+H++G+LFDVG E EWD ++IA P VV+    DLR+YYHSFD+
Sbjct: 278 PGLAISQDGRHWARIEGEHHTGALFDVGLENEWDSMYIASPQVVFHGNGDLRMYYHSFDV 337

Query: 188 TTGCFSVGYARSRDAMKWIKFGKIL*GGPPGSFDELGV 301
             G F++G ARS+D ++W+K GKI+ GG  GSFDE GV
Sbjct: 338 ENGQFAIGIARSKDGIRWVKLGKIMGGGISGSFDESGV 375


>tr|B4FDS0|B4FDS0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 364

 Score =  110 bits (275), Expect = 4e-23
 Identities = 55/103 (53%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGE----WDFLFIADPHVVYVNTDDLRLYYH 175
           PGL +S DGR+WARIEGDH++G+LF V  EGE    W+   I  P VV     DLR+YYH
Sbjct: 147 PGLAISQDGRHWARIEGDHHTGALFSVAEEGEKSRGWEARCIVAPKVVMHADGDLRMYYH 206

Query: 176 SFDLTTGCFSVGYARSRDAMKWIKFGKIL*GGPPGSFDELGVK 304
           SFD  +   ++G ARSRD ++W K GK+L GG  G FDE GV+
Sbjct: 207 SFDEMSQRHAIGLARSRDGIRWKKTGKVLEGGRAGCFDECGVQ 249


>tr|B6TJG8|B6TJG8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 364

 Score =  110 bits (274), Expect = 5e-23
 Identities = 55/103 (53%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGE----WDFLFIADPHVVYVNTDDLRLYYH 175
           PGL +S DGR+WARIEGDH++G+LF V  EGE    W+   I  P VV     DLR+YYH
Sbjct: 147 PGLAISQDGRHWARIEGDHHTGALFSVAEEGEKSRGWEARCIVAPKVVMHADRDLRMYYH 206

Query: 176 SFDLTTGCFSVGYARSRDAMKWIKFGKIL*GGPPGSFDELGVK 304
           SFD  +   ++G ARSRD ++W K GK+L GG  G FDE GV+
Sbjct: 207 SFDEMSQRHAIGLARSRDGIRWKKTGKVLEGGRAGCFDECGVQ 249


>tr|Q6ZA95|Q6ZA95_ORYSJ Os08g0433300 protein OS=Oryza sativa subsp.
           japonica GN=P0431A03.18 PE=4 SV=1
          Length = 381

 Score =  107 bits (267), Expect = 3e-22
 Identities = 54/106 (50%), Positives = 70/106 (66%), Gaps = 7/106 (6%)
 Frame = +2

Query: 8   PGLTMSHDGRNWARIEGDHYSGSLFDVGGEGE-------WDFLFIADPHVVYVNTDDLRL 166
           PGL +S DGR+WARIEGDH++G+L  VG E E       W+   +A P VV     DLR+
Sbjct: 163 PGLAISQDGRHWARIEGDHHTGALLGVGEEEEGGEPRRGWEARCVAAPKVVLHAEGDLRM 222

Query: 167 YYHSFDLTTGCFSVGYARSRDAMKWIKFGKIL*GGPPGSFDELGVK 304
           YYHSFD  +   ++G ARS+D ++W K GK+L GG  GSFDE GV+
Sbjct: 223 YYHSFDEMSQRHAIGLARSKDGVRWRKAGKVLEGGKAGSFDEGGVR 268