BP914788 |
Clone id |
YMU001_000062_H05 |
Library |
YMU01 |
Length |
413 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000062_H05. |
Accession |
BP914788 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACTCTGCAAGGAGACTTTTAGCCAGCGCTCGGCTAACAGAATTCTCAAAGTTTTCATAAT CTTTCCACAGTTGTTCCACAAGGTGTATGGGAGCCAGTATTGCTCGCTGATAGGCCTTAC GAACAGCTGTCATCCTTTGTGACTCCTCCTGCGGTGATGATGCCGGAGTAGCCTTTAGAA AAGCTATATACTCCATCCATACAGCACCAGCCCCGATATCCATTCCAATATGACCCAGCA TAAAATCAAAAGCCTTCTTTGTTTCATCACGACCTTCAGCACCTCTATTTTCATTGACCT TTCGTATAAAGCGTATATAGCATCTCCAGAGATCAACATGAAGACAGCTTAGCAAGCAAC GGCTAAATATCTGTTCTGTGGCCTCATCATTATTTGCCATCATTTGAGCCTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O14233 |
Definition |
sp|O14233|RNA14_SCHPO mRNA 3'-end-processing protein rna14 OS=Schizosaccharomyces pombe |
Align length |
136 |
Score (bit) |
134.0 |
E-value |
1.0e-31 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TT67 |
Definition |
tr|A9TT67|A9TT67_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
137 |
Score (bit) |
229.0 |
E-value |
7.0e-59 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914788|Adiantum capillus-veneris mRNA, clone: YMU001_000062_H05. (413 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TT67|A9TT67_PHYPA Predicted protein OS=Physcomitrella paten... 229 7e-59 tr|A7PFB2|A7PFB2_VITVI Chromosome chr11 scaffold_14, whole genom... 220 3e-56 tr|Q2QNB5|Q2QNB5_ORYSJ Os12g0571900 protein OS=Oryza sativa subs... 207 3e-52 tr|A3CIM7|A3CIM7_ORYSJ Putative uncharacterized protein OS=Oryza... 207 3e-52 tr|B8BML6|B8BML6_ORYSI Putative uncharacterized protein OS=Oryza... 204 1e-51 tr|B6UDF6|B6UDF6_MAIZE Putative uncharacterized protein OS=Zea m... 203 4e-51 tr|Q8LKG5|Q8LKG5_ARATH Cleavage stimulation factor 77 OS=Arabido... 193 4e-48 tr|Q8GUP1|Q8GUP1_ARATH Putative uncharacterized protein At1g1776... 193 4e-48 tr|Q9FZ58|Q9FZ58_ARATH F11A6.10 protein OS=Arabidopsis thaliana ... 187 2e-46 tr|B6K4N2|B6K4N2_SCHJP mRNA 3'-end-processing protein rna14 OS=S... 134 2e-30 tr|Q7JPI2|Q7JPI2_CAEEL Suppressor of forked homolog OS=Caenorhab... 130 3e-29 tr|Q19866|Q19866_CAEEL Protein F28C6.6, confirmed by transcript ... 130 3e-29 tr|Q18907|Q18907_CAEEL Cleavage stimulation factor OS=Caenorhabd... 130 3e-29 tr|B3RS66|B3RS66_TRIAD Putative uncharacterized protein (Fragmen... 123 5e-27 tr|Q54LG7|Q54LG7_DICDI Cleavage stimulation factor subunit 3 OS=... 122 7e-27 tr|B6PDH7|B6PDH7_BRAFL Putative uncharacterized protein (Fragmen... 121 2e-26 tr|Q6P4J1|Q6P4J1_XENTR Cleavage stimulation factor, 3' pre-RNA, ... 121 2e-26 tr|Q6DDM9|Q6DDM9_XENLA Cstf3-prov protein OS=Xenopus laevis GN=c... 121 2e-26 tr|Q4A1D1|Q4A1D1_XENLA Cleavage stimulation factor, 3' pre-RNA, ... 121 2e-26 tr|Q7ZVG5|Q7ZVG5_DANRE Cleavage stimulation factor, 3' pre-RNA, ... 120 3e-26 tr|Q6PUS3|Q6PUS3_DANRE Cleavage stimulation factor, 3' pre-RNA, ... 120 3e-26 tr|Q5F4A0|Q5F4A0_CHICK Putative uncharacterized protein OS=Gallu... 120 3e-26 tr|Q4S0X2|Q4S0X2_TETNG Chromosome 5 SCAF14773, whole genome shot... 120 3e-26 tr|Q3TXN6|Q3TXN6_MOUSE Putative uncharacterized protein (Fragmen... 120 3e-26 tr|A2AQH9|A2AQH9_MOUSE Cleavage stimulation factor, 3' pre-RNA, ... 120 3e-26 tr|A0JPN7|A0JPN7_RAT Cleavage stimulation factor, 3' pre-RNA, su... 120 3e-26 tr|Q4R6E6|Q4R6E6_MACFA Testis cDNA, clone: QtsA-18174, similar t... 120 3e-26 tr|A5PJR5|A5PJR5_BOVIN CSTF3 protein OS=Bos taurus GN=CSTF3 PE=2... 120 3e-26 tr|B4DMA4|B4DMA4_HUMAN cDNA FLJ58400, highly similar to Cleavage... 120 3e-26 tr|A8K471|A8K471_HUMAN cDNA FLJ78438, highly similar to Homo sap... 120 3e-26
>tr|A9TT67|A9TT67_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_150199 PE=4 SV=1 Length = 730
Score = 229 bits (583), Expect = 7e-59 Identities = 105/137 (76%), Positives = 126/137 (91%) Frame = -2
Query: 412 EAQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLG 233 EAQ+ AN+D+A +QIFSRCLL CLHVDLWR Y+R++RKVNENRG+EGR+E KKAF+FMLG Sbjct: 44 EAQLTANDDDAVKQIFSRCLLQCLHVDLWRAYLRYMRKVNENRGSEGREEMKKAFEFMLG 103
Query: 232 HIGMDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYE 53 HIG DI AG VW+EYI++LKA PA++PQEES RMTAVRKAYQ+A+LAP+HLVEQ+WK+YE Sbjct: 104 HIGFDINAGPVWLEYISYLKAAPAATPQEESFRMTAVRKAYQKAVLAPVHLVEQIWKEYE 163
Query: 52 NFENSVSRALAKSLLAE 2 +FENSVSRALAK LLAE Sbjct: 164 SFENSVSRALAKGLLAE 180
>tr|A7PFB2|A7PFB2_VITVI Chromosome chr11 scaffold_14, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016982001 PE=4 SV=1 Length = 771
Score = 220 bits (560), Expect = 3e-56 Identities = 104/137 (75%), Positives = 118/137 (86%) Frame = -2
Query: 412 EAQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLG 233 EAQM NNDEAT+QIFSRCLL+C + LWRCYIRFIRKVNE +G EG++ET+KAFDFML Sbjct: 67 EAQMAVNNDEATKQIFSRCLLNCFQIPLWRCYIRFIRKVNEKKGVEGQEETRKAFDFMLN 126
Query: 232 HIGMDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYE 53 +G DI +G VWMEYIAFLK+ PA + QEESQRMTAVRKAYQ+AI+ P H VEQLWKDYE Sbjct: 127 FVGADIASGPVWMEYIAFLKSYPAQTTQEESQRMTAVRKAYQKAIVTPTHHVEQLWKDYE 186
Query: 52 NFENSVSRALAKSLLAE 2 NFENSVSRALAK LL+E Sbjct: 187 NFENSVSRALAKGLLSE 203
>tr|Q2QNB5|Q2QNB5_ORYSJ Os12g0571900 protein OS=Oryza sativa subsp. japonica GN=Os12g0571900 PE=2 SV=1 Length = 731
Score = 207 bits (526), Expect = 3e-52 Identities = 96/137 (70%), Positives = 115/137 (83%) Frame = -2
Query: 412 EAQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLG 233 EA M A +DEAT+QIFSRCLLSCL ++LWRCYI FIR+VN+ RG++G +ETKKAFDFML Sbjct: 47 EAYMSAKDDEATKQIFSRCLLSCLQINLWRCYINFIRRVNDKRGSDGLEETKKAFDFMLN 106
Query: 232 HIGMDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYE 53 ++G D+ +G VWM+YIAFLK+ P +PQEES RMT VRK YQ+AIL P + VEQLWKDYE Sbjct: 107 YVGNDVASGPVWMDYIAFLKSMPVVTPQEESHRMTTVRKVYQKAILVPTNHVEQLWKDYE 166
Query: 52 NFENSVSRALAKSLLAE 2 NFENSVSR LAK LL+E Sbjct: 167 NFENSVSRTLAKGLLSE 183
>tr|A3CIM7|A3CIM7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_035149 PE=4 SV=1 Length = 663
Score = 207 bits (526), Expect = 3e-52 Identities = 96/137 (70%), Positives = 115/137 (83%) Frame = -2
Query: 412 EAQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLG 233 EA M A +DEAT+QIFSRCLLSCL ++LWRCYI FIR+VN+ RG++G +ETKKAFDFML Sbjct: 47 EAYMSAKDDEATKQIFSRCLLSCLQINLWRCYINFIRRVNDKRGSDGLEETKKAFDFMLN 106
Query: 232 HIGMDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYE 53 ++G D+ +G VWM+YIAFLK+ P +PQEES RMT VRK YQ+AIL P + VEQLWKDYE Sbjct: 107 YVGNDVASGPVWMDYIAFLKSMPVVTPQEESHRMTTVRKVYQKAILVPTNHVEQLWKDYE 166
Query: 52 NFENSVSRALAKSLLAE 2 NFENSVSR LAK LL+E Sbjct: 167 NFENSVSRTLAKGLLSE 183
>tr|B8BML6|B8BML6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38816 PE=4 SV=1 Length = 879
Score = 204 bits (520), Expect = 1e-51 Identities = 95/137 (69%), Positives = 114/137 (83%) Frame = -2
Query: 412 EAQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLG 233 EA M A +DEAT+QIFSRCLLSCL ++LWRCYI FIR+VN+ G++G +ETKKAFDFML Sbjct: 195 EAYMSAKDDEATKQIFSRCLLSCLQINLWRCYINFIRRVNDKMGSDGLEETKKAFDFMLN 254
Query: 232 HIGMDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYE 53 ++G D+ +G VWM+YIAFLK+ P +PQEES RMT VRK YQ+AIL P + VEQLWKDYE Sbjct: 255 YVGNDVASGPVWMDYIAFLKSMPVVTPQEESHRMTTVRKVYQKAILVPTNHVEQLWKDYE 314
Query: 52 NFENSVSRALAKSLLAE 2 NFENSVSR LAK LL+E Sbjct: 315 NFENSVSRTLAKGLLSE 331
>tr|B6UDF6|B6UDF6_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 236
Score = 203 bits (516), Expect = 4e-51 Identities = 94/134 (70%), Positives = 108/134 (80%) Frame = -2
Query: 403 MMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLGHIG 224 M NNDEA +QIFSRCLL+CLH+ LWRCYI FIR++N+ RG+EG DETKKAFDFML ++G Sbjct: 1 MATNNDEAAKQIFSRCLLNCLHISLWRCYINFIRRINDKRGSEGLDETKKAFDFMLNYVG 60
Query: 223 MDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYENFE 44 D +G VWMEYI FLK+ P P EES RMT VRK YQ+AIL P + VEQLWKDYENFE Sbjct: 61 NDAASGPVWMEYINFLKSMPVVMPHEESHRMTTVRKVYQKAILVPTNHVEQLWKDYENFE 120
Query: 43 NSVSRALAKSLLAE 2 NSVSR LAK LL+E Sbjct: 121 NSVSRTLAKGLLSE 134
>tr|Q8LKG5|Q8LKG5_ARATH Cleavage stimulation factor 77 OS=Arabidopsis thaliana PE=2 SV=1 Length = 734
Score = 193 bits (490), Expect = 4e-48 Identities = 91/137 (66%), Positives = 110/137 (80%) Frame = -2
Query: 412 EAQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLG 233 EAQM NND+AT+QIFSRCLL+CL V LW+CYIRFIRKV + +GAEG++ET KAF+FML Sbjct: 48 EAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFMLN 107
Query: 232 HIGMDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYE 53 +IG DI +G +W EYIAFLK+ PA + E+ R TA+RK Y RAIL P H VEQLWKDYE Sbjct: 108 YIGTDIASGPIWTEYIAFLKSLPALNLNEDLHRKTALRKVYHRAILTPTHHVEQLWKDYE 167
Query: 52 NFENSVSRALAKSLLAE 2 NFEN+V+R LAK L+ E Sbjct: 168 NFENTVNRQLAKGLVNE 184
>tr|Q8GUP1|Q8GUP1_ARATH Putative uncharacterized protein At1g17760 OS=Arabidopsis thaliana GN=At1g17760 PE=1 SV=1 Length = 734
Score = 193 bits (490), Expect = 4e-48 Identities = 91/137 (66%), Positives = 110/137 (80%) Frame = -2
Query: 412 EAQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLG 233 EAQM NND+AT+QIFSRCLL+CL V LW+CYIRFIRKV + +GAEG++ET KAF+FML Sbjct: 48 EAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFMLN 107
Query: 232 HIGMDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYE 53 +IG DI +G +W EYIAFLK+ PA + E+ R TA+RK Y RAIL P H VEQLWKDYE Sbjct: 108 YIGTDIASGPIWTEYIAFLKSLPALNLNEDLHRKTALRKVYHRAILTPTHHVEQLWKDYE 167
Query: 52 NFENSVSRALAKSLLAE 2 NFEN+V+R LAK L+ E Sbjct: 168 NFENTVNRQLAKGLVNE 184
>tr|Q9FZ58|Q9FZ58_ARATH F11A6.10 protein OS=Arabidopsis thaliana GN=F11A6.10 PE=4 SV=1 Length = 793
Score = 187 bits (475), Expect = 2e-46 Identities = 91/141 (64%), Positives = 110/141 (78%), Gaps = 4/141 (2%) Frame = -2
Query: 412 EAQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLG 233 EAQM NND+AT+QIFSRCLL+CL V LW+CYIRFIRKV + +GAEG++ET KAF+FML Sbjct: 118 EAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFMLN 177
Query: 232 HIGMDIGAGAVWMEYIAFLKATP----ASSPQEESQRMTAVRKAYQRAILAPIHLVEQLW 65 +IG DI +G +W EYIAFLK+ P A + E+ R TA+RK Y RAIL P H VEQLW Sbjct: 178 YIGTDIASGPIWTEYIAFLKSLPIPMQALNLNEDLHRKTALRKVYHRAILTPTHHVEQLW 237
Query: 64 KDYENFENSVSRALAKSLLAE 2 KDYENFEN+V+R LAK L+ E Sbjct: 238 KDYENFENTVNRQLAKGLVNE 258
>tr|B6K4N2|B6K4N2_SCHJP mRNA 3'-end-processing protein rna14 OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_03594 PE=4 SV=1 Length = 735
Score = 134 bits (337), Expect = 2e-30 Identities = 58/136 (42%), Positives = 96/136 (70%) Frame = -2
Query: 409 AQMMANNDEATEQIFSRCLLSCLHVDLWRCYIRFIRKVNENRGAEGRDETKKAFDFMLGH 230 A++ N+ +A E +FSRCLL L VD+ Y+ +IR++N + A+ R +A++F++ Sbjct: 108 AELAFNDFQAVELLFSRCLLKVLSVDICSLYLGYIRRINPSNDAQARTTISQAYEFVIDT 167
Query: 229 IGMDIGAGAVWMEYIAFLKATPASSPQEESQRMTAVRKAYQRAILAPIHLVEQLWKDYEN 50 +G+DI +G +W +YI FL++ PA+S E+ Q++ ++R+ YQRAI P+ VE+LW+DY+ Sbjct: 168 VGVDIDSGPIWADYIDFLRSAPANSTWEQQQKLDSIRRVYQRAIATPLLNVEKLWRDYDT 227
Query: 49 FENSVSRALAKSLLAE 2 FENS++RA A+ LAE Sbjct: 228 FENSINRATARKFLAE 243
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