BP914789
Clone id YMU001_000062_H06
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TATGGAAGGAGCTCTCTCATACTTCACAAGTTGTTGCAAAGTGGGCAAACTACACAAGAA
TGTCCTGAATCTCTACATAAAGTTAGCACATGAGCTGATAAACGACCTGTGCACTAGGAC
TTTTGTAAATTGAACAGCGGACAGACACTGAACCCCCTGGACAGACACTGAACTCCCCGA
CACAGCAAAGGTTCCAAAGCCAGGACAACCTCACAAACACAACCTTGAAAATGGCATATC
AATCTCTTCTGATTGAGTGGCTCTAAGCCACAGCCCAAGCCACAAGCCCAGAATTGGAAA
TGCTTCCATTCATCCCACTGTGTGACAGACCAAAAGTCACACAATCTAACATCTTCATAC
TTGGCTTCAGAATGTGCCCTAGCAGAAGATACCTTTCTTTCAGTCATGGCGTTACCAAAG
TCGTACAACAGCAAACAAACAAAGAGCAGTGATTTCAAGCAGTGTACAAGCTCCTCACCT
CGTACCTTGAGAACACCGGGTATCTTCAAGCAAGAGGGTCAGCGAGCTACAGACCGAATC
GC
■■Homology search results ■■ -
sp_hit_id Q6XJV4
Definition sp|Q6XJV4|MO2R4_MOUSE Cell surface glycoprotein CD200 receptor 4 OS=Mus musculus
Align length 74
Score (bit) 31.2
E-value 3.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914789|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H06.
(542 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6XJV4|MO2R4_MOUSE Cell surface glycoprotein CD200 receptor 4... 31 3.4
sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 hom... 30 5.8
sp|Q7Z3I7|ZN572_HUMAN Zinc finger protein 572 OS=Homo sapiens GN... 30 7.6
sp|Q61194|P3C2A_MOUSE Phosphatidylinositol-4-phosphate 3-kinase ... 30 7.6
sp|Q6ZMS4|YK023_HUMAN Putative zinc finger protein FLJ16720 OS=H... 30 9.9
sp|P34107|SODF_ENTHI Superoxide dismutase [Fe] OS=Entamoeba hist... 30 9.9
sp|Q8XAV0|RUTF_ECO57 Putative flavin reductase rutF OS=Escherich... 30 9.9
sp|O76387|PTH2_CAEEL Probable peptidyl-tRNA hydrolase 2 OS=Caeno... 30 9.9

>sp|Q6XJV4|MO2R4_MOUSE Cell surface glycoprotein CD200 receptor 4
OS=Mus musculus GN=Cd200r4 PE=1 SV=1
Length = 270

Score = 31.2 bits (69), Expect = 3.4
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1

Query: 277 KPQAQ-NWKCFHSSHCVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYNSKQTKSSD 453
KP AQ +W CVT +SH+ + + S C ++ V L Q+ S +
Sbjct: 170 KPAAQISWT--PDGDCVTKSESHSNGTVTVRSTCHWEQNNVSVVSCLVSHSTGNQSLSIE 227

Query: 454 FKQCTSSSPRTLRT 495
Q T ++PR+L T
Sbjct: 228 LSQGTMTTPRSLLT 241


>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog
B OS=Homo sapiens GN=PDS5B PE=1 SV=1
Length = 1447

Score = 30.4 bits (67), Expect = 5.8
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1

Query: 37 QSGQTTQECPESLHKVST*ADKRPVH*DFCKLNSGQTLNPLDRH*TPRHSKGSKARTTSQ 216
QSG T Q+ H+VS A +R + + S Q+ TP+ +G ++T S
Sbjct: 1333 QSGNTEQKSKSKQHRVSRRAQQRAESPESSAIESTQS--------TPQKGRGRPSKTPSP 1384

Query: 217 TQP*K 231
+QP K
Sbjct: 1385 SQPKK 1389


>sp|Q7Z3I7|ZN572_HUMAN Zinc finger protein 572 OS=Homo sapiens
GN=ZNF572 PE=2 SV=1
Length = 529

Score = 30.0 bits (66), Expect = 7.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1

Query: 271 QPKPQAQNWKCF-HSSHCVTDQKSHNLTSSYLASECA 378
+P ++ WK F +SSH T Q++H+ Y SECA
Sbjct: 130 RPYKCSECWKSFSNSSHLRTHQRTHSGEKPYKCSECA 166


>sp|Q61194|P3C2A_MOUSE Phosphatidylinositol-4-phosphate 3-kinase C2
domain-containing alpha polypeptide OS=Mus musculus
GN=Pik3c2a PE=1 SV=2
Length = 1686

Score = 30.0 bits (66), Expect = 7.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1

Query: 439 TKSSDFKQCTSSSPRTLRTPGIFKQE 516
+ +S+FKQC+SS P +RT + K E
Sbjct: 5 SNNSEFKQCSSSHPEPIRTKDVNKAE 30


>sp|Q6ZMS4|YK023_HUMAN Putative zinc finger protein FLJ16720 OS=Homo
sapiens PE=5 SV=2
Length = 493

Score = 29.6 bits (65), Expect = 9.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1

Query: 307 HSSHCVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYNSKQTKSSDFKQCTSSSPRT 486
HSSH + Q+ HN Y +ECA A + + +++ + K + K+C ++ R+
Sbjct: 176 HSSHLIQHQRLHNGEKPYKCNECAKAFNQSSKLFDHQRTHTGE--KPYECKECGAAFSRS 233


>sp|P34107|SODF_ENTHI Superoxide dismutase [Fe] OS=Entamoeba
histolytica GN=SODB PE=2 SV=1
Length = 190

Score = 29.6 bits (65), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1

Query: 308 WKHFQFWACGLGCGLEPLNQ 249
W H +W C GCG++P Q
Sbjct: 73 WNHAFYWKCMCGCGVKPSEQ 92


>sp|Q8XAV0|RUTF_ECO57 Putative flavin reductase rutF OS=Escherichia
coli O157:H7 GN=rutF PE=2 SV=2
Length = 164

Score = 29.6 bits (65), Expect = 9.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1

Query: 167 CLSRGFSVCPLFNLQKS*CTGRLSA 93
CL+RG SV P+FN ++ C LSA
Sbjct: 52 CLNRGASVWPVFNENRTLCVNTLSA 76


>sp|O76387|PTH2_CAEEL Probable peptidyl-tRNA hydrolase 2
OS=Caenorhabditis elegans GN=C24G6.8 PE=2 SV=1
Length = 316

Score = 29.6 bits (65), Expect = 9.9
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Frame = +1

Query: 310 SSHCVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYNS----------KQTKSSDFK 459
SSH V Q+ + + + YLA L D + +V+AL ++ ++ +++ SDF
Sbjct: 117 SSHPVDPQEPNEVNNEYLAHLLDLGFDEYTAVLALKRTNSAGVEQAVAWIVERSNESDFD 176

Query: 460 QCTSSS 477
+ +SSS
Sbjct: 177 EDSSSS 182


tr_hit_id Q98JE7
Definition tr|Q98JE7|Q98JE7_RHILO Probable transcriptional regulator OS=Rhizobium loti
Align length 54
Score (bit) 35.8
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914789|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H06.
(542 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q98JE7|Q98JE7_RHILO Probable transcriptional regulator OS=Rhi... 36 1.5
tr|A7PP68|A7PP68_VITVI Chromosome chr8 scaffold_23, whole genome... 35 3.3
tr|A5BPK9|A5BPK9_VITVI Putative uncharacterized protein OS=Vitis... 35 3.3
tr|A6FI06|A6FI06_9GAMM Putative uncharacterized protein OS=Morit... 33 7.4
tr|A4C1W8|A4C1W8_9FLAO TRNA modification GTPase OS=Polaribacter ... 33 7.4
tr|A0MS26|A0MS26_9GAMM BryC OS=Candidatus Endobugula sertula PE=... 33 9.7
tr|A0MS25|A0MS25_9GAMM BryB OS=Candidatus Endobugula sertula PE=... 33 9.7

>tr|Q98JE7|Q98JE7_RHILO Probable transcriptional regulator
OS=Rhizobium loti GN=mlr1976 PE=4 SV=1
Length = 318

Score = 35.8 bits (81), Expect = 1.5
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1

Query: 358 YLASECALAEDTFLSVMALPKSYNSKQTKSSDFKQCTSSSPRTLRTPGIFKQEG 519
+LA EDT ++V+A Y S+ S+ FK+ T ++P+ RT G ++ G
Sbjct: 254 HLAERALREEDTPVAVLARSLGYTSESAFSNAFKRATGTAPKRYRTAGKAERSG 307


>tr|A7PP68|A7PP68_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021533001
PE=4 SV=1
Length = 685

Score = 34.7 bits (78), Expect = 3.3
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Frame = +1

Query: 130 LNSGQTLNPLDRH*TPRHSKGSKARTTSQTQP*KWHINLF*LSGSKPQPKPQAQNWKCFH 309
+ SG + + H T G K ++ +T K HI S S P P + C H
Sbjct: 326 IRSGSSAARKESHRTQGKEYGGKKQSRMETGTPKRHIKKARTSVSPPMPSDYTTSRSCSH 385

Query: 310 SSH------CVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYN-SKQTKSSDFKQCT 468
S C + +S +++S + S ++PKS + S+ ++S K
Sbjct: 386 SKSLKSIPGCSSPSRSRSVSSKHFLS-------------SIPKSSSTSRNSRSGCAKSRR 432

Query: 469 SSSPRTL 489
SSSP +L
Sbjct: 433 SSSPTSL 439


>tr|A5BPK9|A5BPK9_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_012165 PE=4 SV=1
Length = 685

Score = 34.7 bits (78), Expect = 3.3
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Frame = +1

Query: 130 LNSGQTLNPLDRH*TPRHSKGSKARTTSQTQP*KWHINLF*LSGSKPQPKPQAQNWKCFH 309
+ SG + + H T G K ++ +T K HI S S P P + C H
Sbjct: 326 IRSGSSAARKESHRTQGKEYGGKKQSRMETGTPKRHIKKARTSVSPPMPSDYTTSRSCSH 385

Query: 310 SSH------CVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYN-SKQTKSSDFKQCT 468
S C + +S +++S + S ++PKS + S+ ++S K
Sbjct: 386 SKSLKSIPGCSSPSRSRSVSSKHFLS-------------SIPKSSSTSRNSRSGCAKSRR 432

Query: 469 SSSPRTL 489
SSSP +L
Sbjct: 433 SSSPTSL 439


>tr|A6FI06|A6FI06_9GAMM Putative uncharacterized protein
OS=Moritella sp. PE36 GN=PE36_17907 PE=4 SV=1
Length = 195

Score = 33.5 bits (75), Expect = 7.4
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -2

Query: 523 ADPLA*RYPVFSRYEVRSLYTA*NHCSLFVCCCTTLVTP*LKERYLLLGHILK--PSMKM 350
++PL Y F ++R NH + CC TLV P +ER+ + ++ S+K
Sbjct: 97 SNPLIKHYIGFYPSQIR------NHLDVIPCCPVTLVFP-CEERHFEVDDVIAALSSLKQ 149

Query: 349 LDCVTFGLSHSGMNGSISNSGLVA 278
++C+ H MN N L A
Sbjct: 150 VNCIKTSFYHGFMNSLSDNFSLSA 173


>tr|A4C1W8|A4C1W8_9FLAO TRNA modification GTPase OS=Polaribacter
irgensii 23-P GN=PI23P_12327 PE=3 SV=1
Length = 464

Score = 33.5 bits (75), Expect = 7.4
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +1

Query: 238 INLF*LSGSKPQPKPQAQNWKCFHSSHCVTDQKSHNLTSSYLASECALAEDTFLSVMALP 417
I++ LSG + P +A N+K + + DQK+H + ++ ++ ++ +S+ P
Sbjct: 19 ISVIRLSGEQAIPIVEA-NFKSIQKNKYLKDQKTHTIHLGHIVDNKSVLDEVLVSIFKNP 77

Query: 418 KSYNSK 435
KSY +
Sbjct: 78 KSYTGE 83


>tr|A0MS26|A0MS26_9GAMM BryC OS=Candidatus Endobugula sertula PE=4
SV=1
Length = 5378

Score = 33.1 bits (74), Expect = 9.7
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = +3

Query: 240 QSLLIEWL*ATAQATSPELEMLPFIP-------LCDRPKVTQSNIFILGFRMCP---SRR 389
Q L I+W+ +T P LP P L ++P+ +N + + SR
Sbjct: 2835 QGLDIDWMLLYTHSTPPRRISLPTYPFARDRYWLPEKPRYNAANHPVSNHQTTTQNHSRF 2894

Query: 390 YLSFSHGVTKVVQQQTNKEQ*FQAVYKLLTSYLENTGYLQAR 515
+ H V + Q+TN+++ Q + KLL L++ G Q R
Sbjct: 2895 AIDTDHDVIAEIMQKTNQQELEQWLLKLLFVQLQHMGLFQHR 2936


>tr|A0MS25|A0MS25_9GAMM BryB OS=Candidatus Endobugula sertula PE=4
SV=1
Length = 5521

Score = 33.1 bits (74), Expect = 9.7
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = +3

Query: 240 QSLLIEWL*ATAQATSPELEMLPFIP-------LCDRPKVTQSNIFILGFRMCP---SRR 389
Q L I+W+ +T P LP P L ++P+ +N + + SR
Sbjct: 1017 QGLDIDWMLLYTHSTPPRRISLPTYPFARDRYWLPEKPRYNAANHPVSNHQTTTQNHSRF 1076

Query: 390 YLSFSHGVTKVVQQQTNKEQ*FQAVYKLLTSYLENTGYLQAR 515
+ H V + Q+TN+++ Q + KLL L++ G Q R
Sbjct: 1077 AIDTDHDVIAEIMQKTNQQELEQWLLKLLFVQLQHMGLFQHR 1118