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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914789
Clone id YMU001_000062_H06
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATGGAAGGAGCTCTCTCATACTTCACAAGTTGTTGCAAAGTGGGCAAACTACACAAGAA
TGTCCTGAATCTCTACATAAAGTTAGCACATGAGCTGATAAACGACCTGTGCACTAGGAC
TTTTGTAAATTGAACAGCGGACAGACACTGAACCCCCTGGACAGACACTGAACTCCCCGA
CACAGCAAAGGTTCCAAAGCCAGGACAACCTCACAAACACAACCTTGAAAATGGCATATC
AATCTCTTCTGATTGAGTGGCTCTAAGCCACAGCCCAAGCCACAAGCCCAGAATTGGAAA
TGCTTCCATTCATCCCACTGTGTGACAGACCAAAAGTCACACAATCTAACATCTTCATAC
TTGGCTTCAGAATGTGCCCTAGCAGAAGATACCTTTCTTTCAGTCATGGCGTTACCAAAG
TCGTACAACAGCAAACAAACAAAGAGCAGTGATTTCAAGCAGTGTACAAGCTCCTCACCT
CGTACCTTGAGAACACCGGGTATCTTCAAGCAAGAGGGTCAGCGAGCTACAGACCGAATC
GC
■■Homology search results ■■ -
sp_hit_id Q6XJV4
Definition sp|Q6XJV4|MO2R4_MOUSE Cell surface glycoprotein CD200 receptor 4 OS=Mus musculus
Align length 74
Score (bit) 31.2
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914789|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H06.
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6XJV4|MO2R4_MOUSE Cell surface glycoprotein CD200 receptor 4...    31   3.4  
sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 hom...    30   5.8  
sp|Q7Z3I7|ZN572_HUMAN Zinc finger protein 572 OS=Homo sapiens GN...    30   7.6  
sp|Q61194|P3C2A_MOUSE Phosphatidylinositol-4-phosphate 3-kinase ...    30   7.6  
sp|Q6ZMS4|YK023_HUMAN Putative zinc finger protein FLJ16720 OS=H...    30   9.9  
sp|P34107|SODF_ENTHI Superoxide dismutase [Fe] OS=Entamoeba hist...    30   9.9  
sp|Q8XAV0|RUTF_ECO57 Putative flavin reductase rutF OS=Escherich...    30   9.9  
sp|O76387|PTH2_CAEEL Probable peptidyl-tRNA hydrolase 2 OS=Caeno...    30   9.9  

>sp|Q6XJV4|MO2R4_MOUSE Cell surface glycoprotein CD200 receptor 4
           OS=Mus musculus GN=Cd200r4 PE=1 SV=1
          Length = 270

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 277 KPQAQ-NWKCFHSSHCVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYNSKQTKSSD 453
           KP AQ +W       CVT  +SH+  +  + S C   ++    V  L       Q+ S +
Sbjct: 170 KPAAQISWT--PDGDCVTKSESHSNGTVTVRSTCHWEQNNVSVVSCLVSHSTGNQSLSIE 227

Query: 454 FKQCTSSSPRTLRT 495
             Q T ++PR+L T
Sbjct: 228 LSQGTMTTPRSLLT 241


>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog
            B OS=Homo sapiens GN=PDS5B PE=1 SV=1
          Length = 1447

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 37   QSGQTTQECPESLHKVST*ADKRPVH*DFCKLNSGQTLNPLDRH*TPRHSKGSKARTTSQ 216
            QSG T Q+     H+VS  A +R    +   + S Q+        TP+  +G  ++T S 
Sbjct: 1333 QSGNTEQKSKSKQHRVSRRAQQRAESPESSAIESTQS--------TPQKGRGRPSKTPSP 1384

Query: 217  TQP*K 231
            +QP K
Sbjct: 1385 SQPKK 1389


>sp|Q7Z3I7|ZN572_HUMAN Zinc finger protein 572 OS=Homo sapiens
           GN=ZNF572 PE=2 SV=1
          Length = 529

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 271 QPKPQAQNWKCF-HSSHCVTDQKSHNLTSSYLASECA 378
           +P   ++ WK F +SSH  T Q++H+    Y  SECA
Sbjct: 130 RPYKCSECWKSFSNSSHLRTHQRTHSGEKPYKCSECA 166


>sp|Q61194|P3C2A_MOUSE Phosphatidylinositol-4-phosphate 3-kinase C2
           domain-containing alpha polypeptide OS=Mus musculus
           GN=Pik3c2a PE=1 SV=2
          Length = 1686

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 439 TKSSDFKQCTSSSPRTLRTPGIFKQE 516
           + +S+FKQC+SS P  +RT  + K E
Sbjct: 5   SNNSEFKQCSSSHPEPIRTKDVNKAE 30


>sp|Q6ZMS4|YK023_HUMAN Putative zinc finger protein FLJ16720 OS=Homo
           sapiens PE=5 SV=2
          Length = 493

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +1

Query: 307 HSSHCVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYNSKQTKSSDFKQCTSSSPRT 486
           HSSH +  Q+ HN    Y  +ECA A +    +    +++  +  K  + K+C ++  R+
Sbjct: 176 HSSHLIQHQRLHNGEKPYKCNECAKAFNQSSKLFDHQRTHTGE--KPYECKECGAAFSRS 233


>sp|P34107|SODF_ENTHI Superoxide dismutase [Fe] OS=Entamoeba
           histolytica GN=SODB PE=2 SV=1
          Length = 190

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 308 WKHFQFWACGLGCGLEPLNQ 249
           W H  +W C  GCG++P  Q
Sbjct: 73  WNHAFYWKCMCGCGVKPSEQ 92


>sp|Q8XAV0|RUTF_ECO57 Putative flavin reductase rutF OS=Escherichia
           coli O157:H7 GN=rutF PE=2 SV=2
          Length = 164

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 167 CLSRGFSVCPLFNLQKS*CTGRLSA 93
           CL+RG SV P+FN  ++ C   LSA
Sbjct: 52  CLNRGASVWPVFNENRTLCVNTLSA 76


>sp|O76387|PTH2_CAEEL Probable peptidyl-tRNA hydrolase 2
           OS=Caenorhabditis elegans GN=C24G6.8 PE=2 SV=1
          Length = 316

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
 Frame = +1

Query: 310 SSHCVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYNS----------KQTKSSDFK 459
           SSH V  Q+ + + + YLA    L  D + +V+AL ++ ++          +++  SDF 
Sbjct: 117 SSHPVDPQEPNEVNNEYLAHLLDLGFDEYTAVLALKRTNSAGVEQAVAWIVERSNESDFD 176

Query: 460 QCTSSS 477
           + +SSS
Sbjct: 177 EDSSSS 182
tr_hit_id Q98JE7
Definition tr|Q98JE7|Q98JE7_RHILO Probable transcriptional regulator OS=Rhizobium loti
Align length 54
Score (bit) 35.8
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914789|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H06.
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q98JE7|Q98JE7_RHILO Probable transcriptional regulator OS=Rhi...    36   1.5  
tr|A7PP68|A7PP68_VITVI Chromosome chr8 scaffold_23, whole genome...    35   3.3  
tr|A5BPK9|A5BPK9_VITVI Putative uncharacterized protein OS=Vitis...    35   3.3  
tr|A6FI06|A6FI06_9GAMM Putative uncharacterized protein OS=Morit...    33   7.4  
tr|A4C1W8|A4C1W8_9FLAO TRNA modification GTPase OS=Polaribacter ...    33   7.4  
tr|A0MS26|A0MS26_9GAMM BryC OS=Candidatus Endobugula sertula PE=...    33   9.7  
tr|A0MS25|A0MS25_9GAMM BryB OS=Candidatus Endobugula sertula PE=...    33   9.7  

>tr|Q98JE7|Q98JE7_RHILO Probable transcriptional regulator
           OS=Rhizobium loti GN=mlr1976 PE=4 SV=1
          Length = 318

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +1

Query: 358 YLASECALAEDTFLSVMALPKSYNSKQTKSSDFKQCTSSSPRTLRTPGIFKQEG 519
           +LA      EDT ++V+A    Y S+   S+ FK+ T ++P+  RT G  ++ G
Sbjct: 254 HLAERALREEDTPVAVLARSLGYTSESAFSNAFKRATGTAPKRYRTAGKAERSG 307


>tr|A7PP68|A7PP68_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021533001
           PE=4 SV=1
          Length = 685

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
 Frame = +1

Query: 130 LNSGQTLNPLDRH*TPRHSKGSKARTTSQTQP*KWHINLF*LSGSKPQPKPQAQNWKCFH 309
           + SG +    + H T     G K ++  +T   K HI     S S P P     +  C H
Sbjct: 326 IRSGSSAARKESHRTQGKEYGGKKQSRMETGTPKRHIKKARTSVSPPMPSDYTTSRSCSH 385

Query: 310 SSH------CVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYN-SKQTKSSDFKQCT 468
           S        C +  +S +++S +  S             ++PKS + S+ ++S   K   
Sbjct: 386 SKSLKSIPGCSSPSRSRSVSSKHFLS-------------SIPKSSSTSRNSRSGCAKSRR 432

Query: 469 SSSPRTL 489
           SSSP +L
Sbjct: 433 SSSPTSL 439


>tr|A5BPK9|A5BPK9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012165 PE=4 SV=1
          Length = 685

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
 Frame = +1

Query: 130 LNSGQTLNPLDRH*TPRHSKGSKARTTSQTQP*KWHINLF*LSGSKPQPKPQAQNWKCFH 309
           + SG +    + H T     G K ++  +T   K HI     S S P P     +  C H
Sbjct: 326 IRSGSSAARKESHRTQGKEYGGKKQSRMETGTPKRHIKKARTSVSPPMPSDYTTSRSCSH 385

Query: 310 SSH------CVTDQKSHNLTSSYLASECALAEDTFLSVMALPKSYN-SKQTKSSDFKQCT 468
           S        C +  +S +++S +  S             ++PKS + S+ ++S   K   
Sbjct: 386 SKSLKSIPGCSSPSRSRSVSSKHFLS-------------SIPKSSSTSRNSRSGCAKSRR 432

Query: 469 SSSPRTL 489
           SSSP +L
Sbjct: 433 SSSPTSL 439


>tr|A6FI06|A6FI06_9GAMM Putative uncharacterized protein
           OS=Moritella sp. PE36 GN=PE36_17907 PE=4 SV=1
          Length = 195

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = -2

Query: 523 ADPLA*RYPVFSRYEVRSLYTA*NHCSLFVCCCTTLVTP*LKERYLLLGHILK--PSMKM 350
           ++PL   Y  F   ++R      NH  +  CC  TLV P  +ER+  +  ++    S+K 
Sbjct: 97  SNPLIKHYIGFYPSQIR------NHLDVIPCCPVTLVFP-CEERHFEVDDVIAALSSLKQ 149

Query: 349 LDCVTFGLSHSGMNGSISNSGLVA 278
           ++C+     H  MN    N  L A
Sbjct: 150 VNCIKTSFYHGFMNSLSDNFSLSA 173


>tr|A4C1W8|A4C1W8_9FLAO TRNA modification GTPase OS=Polaribacter
           irgensii 23-P GN=PI23P_12327 PE=3 SV=1
          Length = 464

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = +1

Query: 238 INLF*LSGSKPQPKPQAQNWKCFHSSHCVTDQKSHNLTSSYLASECALAEDTFLSVMALP 417
           I++  LSG +  P  +A N+K    +  + DQK+H +   ++    ++ ++  +S+   P
Sbjct: 19  ISVIRLSGEQAIPIVEA-NFKSIQKNKYLKDQKTHTIHLGHIVDNKSVLDEVLVSIFKNP 77

Query: 418 KSYNSK 435
           KSY  +
Sbjct: 78  KSYTGE 83


>tr|A0MS26|A0MS26_9GAMM BryC OS=Candidatus Endobugula sertula PE=4
            SV=1
          Length = 5378

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
 Frame = +3

Query: 240  QSLLIEWL*ATAQATSPELEMLPFIP-------LCDRPKVTQSNIFILGFRMCP---SRR 389
            Q L I+W+     +T P    LP  P       L ++P+   +N  +   +      SR 
Sbjct: 2835 QGLDIDWMLLYTHSTPPRRISLPTYPFARDRYWLPEKPRYNAANHPVSNHQTTTQNHSRF 2894

Query: 390  YLSFSHGVTKVVQQQTNKEQ*FQAVYKLLTSYLENTGYLQAR 515
             +   H V   + Q+TN+++  Q + KLL   L++ G  Q R
Sbjct: 2895 AIDTDHDVIAEIMQKTNQQELEQWLLKLLFVQLQHMGLFQHR 2936


>tr|A0MS25|A0MS25_9GAMM BryB OS=Candidatus Endobugula sertula PE=4
            SV=1
          Length = 5521

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
 Frame = +3

Query: 240  QSLLIEWL*ATAQATSPELEMLPFIP-------LCDRPKVTQSNIFILGFRMCP---SRR 389
            Q L I+W+     +T P    LP  P       L ++P+   +N  +   +      SR 
Sbjct: 1017 QGLDIDWMLLYTHSTPPRRISLPTYPFARDRYWLPEKPRYNAANHPVSNHQTTTQNHSRF 1076

Query: 390  YLSFSHGVTKVVQQQTNKEQ*FQAVYKLLTSYLENTGYLQAR 515
             +   H V   + Q+TN+++  Q + KLL   L++ G  Q R
Sbjct: 1077 AIDTDHDVIAEIMQKTNQQELEQWLLKLLFVQLQHMGLFQHR 1118