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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914792
Clone id YMU001_000062_H09
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAAGTTCGTCGACTCTTCAAAGACCCACGTTGTCACTGTTCCAGAAGATCAATGGGAAC
CCCAATGGGTTGGGCCTGATGAACAGGACTTGAGAAGTTTTCTGGTGGATCAGAATAGTT
TTAATCCTGTGAGGGTAATGAAGGCTATTGACAGGATCAAGACTATCAGAGACAAGTCAC
TCTAGAAAGAATGCCTTACAATGATTTATGCTAGTTTTGCATGATGCCCACAAAGCAGAA
GGCCTGATATTCCTTTAGCTTGCCCTAATGAGATTAAGCAAGGCAAGTGTGCCAAGTAAA
CAACTAAAGACTAGACTACTAAGACAAGTCTTTTGACTCAAGACAATGATATGTATAATT
GGTATGTCTATTGCATGTGATAGCTAAAATTTACAGGAATGAGATTTCTCCTATTCCAAA
GGGGTTAGATAAATTATATAGACTATGGTAGGT
■■Homology search results ■■ -
sp_hit_id Q9SXQ6
Definition sp|Q9SXQ6|FEN1A_ORYSJ Flap endonuclease 1a OS=Oryza sativa subsp. japonica
Align length 41
Score (bit) 44.3
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914792|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H09.
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SXQ6|FEN1A_ORYSJ Flap endonuclease 1a OS=Oryza sativa subsp...    44   2e-04
sp|Q75LI2|FEN1B_ORYSJ Flap endonuclease 1b OS=Oryza sativa subsp...    43   5e-04
sp|Q8PYF6|FEN_METMA Flap structure-specific endonuclease OS=Meth...    41   0.002
sp|A3DMG2|FEN_STAMF Flap structure-specific endonuclease OS=Stap...    39   0.014
sp|Q8TXU4|FEN_METKA Flap structure-specific endonuclease OS=Meth...    39   0.014
sp|P61942|FEN_NANEQ Flap structure-specific endonuclease OS=Nano...    38   0.018
sp|Q46D63|FEN_METBF Flap structure-specific endonuclease OS=Meth...    38   0.018
sp|A1RSC7|FEN_PYRIL Flap structure-specific endonuclease OS=Pyro...    37   0.051
sp|Q8TIY5|FEN_METAC Flap structure-specific endonuclease OS=Meth...    37   0.051
sp|Q5JGN0|FEN_PYRKO Flap structure-specific endonuclease OS=Pyro...    36   0.067
sp|Q8ZYN2|FEN_PYRAE Flap structure-specific endonuclease OS=Pyro...    36   0.067
sp|Q9YFY5|FEN_AERPE Flap structure-specific endonuclease OS=Aero...    36   0.088
sp|O50123|FEN_PYRHO Flap structure-specific endonuclease OS=Pyro...    34   0.25 
sp|A3MY15|FEN_PYRCJ Flap structure-specific endonuclease OS=Pyro...    34   0.33 
sp|Q9V0P9|FEN_PYRAB Flap structure-specific endonuclease OS=Pyro...    34   0.33 
sp|A8AAC1|FEN_IGNH4 Flap structure-specific endonuclease OS=Igni...    34   0.33 
sp|O93634|FEN_PYRFU Flap structure-specific endonuclease OS=Pyro...    33   0.43 
sp|A2BMI0|FEN_HYPBU Flap structure-specific endonuclease OS=Hype...    33   0.74 
sp|A1RWY2|FEN_THEPD Flap structure-specific endonuclease OS=Ther...    32   0.97 
sp|Q58839|FEN_METJA Flap structure-specific endonuclease OS=Meth...    32   0.97 
sp|Q12UT1|FEN_METBU Flap structure-specific endonuclease OS=Meth...    32   0.97 
sp|P39750|RAD2_SCHPO DNA repair protein rad2 OS=Schizosaccharomy...    32   1.3  
sp|A4WNC4|FEN_PYRAR Flap structure-specific endonuclease OS=Pyro...    32   1.3  
sp|P20908|CO5A1_HUMAN Collagen alpha-1(V) chain OS=Homo sapiens ...    31   2.9  
sp|A6UX46|FEN_META3 Flap structure-specific endonuclease OS=Meth...    29   8.2  

>sp|Q9SXQ6|FEN1A_ORYSJ Flap endonuclease 1a OS=Oryza sativa subsp.
           japonica GN=FEN-1a PE=2 SV=1
          Length = 380

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +3

Query: 57  EPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKS 179
           E +W  PDE+ L  FLV +N FN  RV KAI++IK  ++KS
Sbjct: 295 ELKWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKS 335


>sp|Q75LI2|FEN1B_ORYSJ Flap endonuclease 1b OS=Oryza sativa subsp.
           japonica GN=FEN-1b PE=2 SV=1
          Length = 412

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +3

Query: 66  WVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDK 176
           W  PDE+ L +FL  +N+F+P RV+K++++IK   DK
Sbjct: 298 WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDK 334


>sp|Q8PYF6|FEN_METMA Flap structure-specific endonuclease
           OS=Methanosarcina mazei GN=fen PE=3 SV=1
          Length = 338

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +3

Query: 48  DQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIK 161
           D +E +W  PD + L +FL D+N F+  RV+KA DR+K
Sbjct: 287 DDYEIKWGKPDSEKLINFLCDENDFSEDRVVKAADRLK 324


>sp|A3DMG2|FEN_STAMF Flap structure-specific endonuclease
           OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639
           / F1) GN=fen PE=3 SV=1
          Length = 350

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 63  QWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRI 158
           +W  PDE  +R  LV+++ FNP RV  A++R+
Sbjct: 299 EWRAPDESKIREILVEEHDFNPERVKNAVERL 330


>sp|Q8TXU4|FEN_METKA Flap structure-specific endonuclease
           OS=Methanopyrus kandleri GN=fen PE=3 SV=1
          Length = 348

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 48  DQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIK 161
           D +E  W  PDE+ L  FLV++  F+  RV +A++R+K
Sbjct: 292 DDYELDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLK 329


>sp|P61942|FEN_NANEQ Flap structure-specific endonuclease
           OS=Nanoarchaeum equitans GN=fen PE=3 SV=1
          Length = 339

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = +3

Query: 42  PEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDK 176
           P   +EP+W  P+++ +   LV+++ FNP RV +AI+R++   +K
Sbjct: 283 PVIDFEPKWGKPNKELIFKILVEEHDFNPERVERAIERLEKALNK 327


>sp|Q46D63|FEN_METBF Flap structure-specific endonuclease
           OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
           GN=fen PE=3 SV=1
          Length = 338

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 48  DQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTI 167
           D +E +W  PD + L  FL  +N F+  RV KA++R+K +
Sbjct: 287 DDYEIKWGKPDSEKLIKFLCKENDFSVDRVKKAVERLKVV 326


>sp|A1RSC7|FEN_PYRIL Flap structure-specific endonuclease
           OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)
           GN=fen PE=3 SV=1
          Length = 346

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +3

Query: 48  DQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDK 176
           D++      PDEQ L  FLV ++ F+  RV+KA++R+K  + K
Sbjct: 294 DEYSTDIKKPDEQKLIDFLVREHDFSEDRVLKAVERLKRAQTK 336


>sp|Q8TIY5|FEN_METAC Flap structure-specific endonuclease
           OS=Methanosarcina acetivorans GN=fen PE=3 SV=1
          Length = 338

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 36  TVPE--DQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIK 161
           T PE  + +E +W  PD + L  FL ++N F+  RV KA +R+K
Sbjct: 281 THPEVTEDYEIKWTKPDSEKLIKFLCEENDFSTDRVEKAAERLK 324


>sp|Q5JGN0|FEN_PYRKO Flap structure-specific endonuclease
           OS=Pyrococcus kodakaraensis GN=fen PE=3 SV=1
          Length = 340

 Score = 36.2 bits (82), Expect = 0.067
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 48  DQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIK 161
           D +E +W  PDE+ +  FL D++ F+  RV   ++R+K
Sbjct: 286 DDYELKWREPDEEGILKFLCDEHDFSEERVKNGLERLK 323
tr_hit_id A9S0B8
Definition tr|A9S0B8|A9S0B8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 53
Score (bit) 51.2
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914792|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H09.
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S0B8|A9S0B8_PHYPA Predicted protein OS=Physcomitrella paten...    51   3e-05
tr|B6THM0|B6THM0_MAIZE Flap endonuclease 1a OS=Zea mays PE=2 SV=1      47   4e-04
tr|B4FHY0|B4FHY0_MAIZE Putative uncharacterized protein OS=Zea m...    47   4e-04
tr|Q0DGD0|Q0DGD0_ORYSJ Os05g0540100 protein OS=Oryza sativa subs...    44   0.003
tr|B8AW67|B8AW67_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A6MZD5|A6MZD5_ORYSI Endonuclease putative (Fragment) OS=Oryza...    44   0.003
tr|A9U328|A9U328_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|Q10B10|Q10B10_ORYSJ Os03g0834000 protein OS=Oryza sativa subs...    43   0.007
tr|B8AMS4|B8AMS4_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.007
tr|Q54NU0|Q54NU0_DICDI XPG OS=Dictyostelium discoideum GN=repG P...    42   0.015
tr|A8J2Z9|A8J2Z9_CHLRE Nuclease, Rad2 family OS=Chlamydomonas re...    39   0.100
tr|B8C6S5|B8C6S5_THAPS Exonuclease OS=Thalassiosira pseudonana C...    39   0.17 
tr|A4HFE4|A4HFE4_LEIBR Flap endonuclease-1 (FEN-1), putative OS=...    39   0.17 
tr|A7PRG5|A7PRG5_VITVI Chromosome chr14 scaffold_27, whole genom...    37   0.38 
tr|B6KHT0|B6KHT0_TOXGO Flap endonuclease-1, putative OS=Toxoplas...    37   0.49 
tr|O65251|O65251_ARATH F21E10.3 protein OS=Arabidopsis thaliana ...    37   0.65 
tr|Q4DKQ5|Q4DKQ5_TRYCR Flap endonuclease-1 (FEN-1), putative OS=...    37   0.65 
tr|B6NWD9|B6NWD9_BRAFL Putative uncharacterized protein OS=Branc...    37   0.65 
tr|Q53WJ9|Q53WJ9_ORYSJ Putative flap endonuclease 1 OS=Oryza sat...    36   1.1  
tr|B6YWX4|B6YWX4_THEON Flap structure-specific endonuclease OS=T...    36   1.1  
tr|B0I2Y5|B0I2Y5_AERPE Flap endonuclease-1 OS=Aeropyrum pernix G...    36   1.1  
tr|B0I2Y3|B0I2Y3_AERPE Flap endonuclease-1 OS=Aeropyrum pernix G...    36   1.1  
tr|B0I2Y2|B0I2Y2_AERPE Flap endonuclease-1 OS=Aeropyrum pernix G...    36   1.1  
tr|B0I2Y1|B0I2Y1_AERPE Flap endonuclease-1 OS=Aeropyrum pernix G...    36   1.1  
tr|B6L221|B6L221_BRAFL Putative uncharacterized protein OS=Branc...    35   1.4  
tr|Q76F73|Q76F73_COPCI Flap endonuclease-1 OS=Coprinopsis cinere...    35   1.4  
tr|B0DSN9|B0DSN9_LACBS Predicted protein OS=Laccaria bicolor (st...    35   1.4  
tr|A8NQC2|A8NQC2_COPC7 Putative uncharacterized protein OS=Copri...    35   1.4  
tr|B7R4T6|B7R4T6_9EURY 5' to 3' exonuclease, 5' flap endonucleas...    35   1.4  
tr|Q57WW6|Q57WW6_9TRYP Flap endonuclease-1 (FEN-1), putative OS=...    35   1.9  

>tr|A9S0B8|A9S0B8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_207454 PE=4 SV=1
          Length = 394

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 24/53 (45%), Positives = 35/53 (66%)
 Frame = +3

Query: 21  KTHVVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKS 179
           K  +VT PE   E +W  PD + LR  LV++N FN  RVMKAI+++K  ++K+
Sbjct: 285 KEPLVTPPEKVPEFKWTAPDTEGLRQLLVEENGFNNDRVMKAIEKLKVAKNKA 337


>tr|B6THM0|B6THM0_MAIZE Flap endonuclease 1a OS=Zea mays PE=2 SV=1
          Length = 379

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +3

Query: 57  EPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKS 179
           E +W  PDE+ L SFLV  N FN  RV KAI++IK+ ++KS
Sbjct: 295 ELKWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKS 335


>tr|B4FHY0|B4FHY0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 379

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +3

Query: 57  EPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKS 179
           E +W  PDE+ L SFLV  N FN  RV KAI++IK+ ++KS
Sbjct: 295 ELKWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKS 335


>tr|Q0DGD0|Q0DGD0_ORYSJ Os05g0540100 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0540100 PE=4 SV=1
          Length = 380

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +3

Query: 57  EPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKS 179
           E +W  PDE+ L  FLV +N FN  RV KAI++IK  ++KS
Sbjct: 295 ELKWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKS 335


>tr|B8AW67|B8AW67_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20807 PE=4 SV=1
          Length = 380

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +3

Query: 57  EPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKS 179
           E +W  PDE+ L  FLV +N FN  RV KAI++IK  ++KS
Sbjct: 295 ELKWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKS 335


>tr|A6MZD5|A6MZD5_ORYSI Endonuclease putative (Fragment) OS=Oryza
           sativa subsp. indica PE=2 SV=1
          Length = 262

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +3

Query: 57  EPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKS 179
           E +W  PDE+ L  FLV +N FN  RV KAI++IK  ++KS
Sbjct: 177 ELKWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKS 217


>tr|A9U328|A9U328_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200726 PE=4 SV=1
          Length = 349

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = +3

Query: 21  KTHVVTVPEDQWEPQWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKS 179
           K  +VT  ED  + +W  PD + L  FLV++N FN  RV  AI +I+  ++KS
Sbjct: 285 KEPLVTQAEDVPDFKWTAPDAEGLIKFLVEENGFNHDRVQTAIKKIQLAKNKS 337


>tr|Q10B10|Q10B10_ORYSJ Os03g0834000 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0834000 PE=2 SV=1
          Length = 412

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +3

Query: 66  WVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDK 176
           W  PDE+ L +FL  +N+F+P RV+K++++IK   DK
Sbjct: 298 WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDK 334


>tr|B8AMS4|B8AMS4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14202 PE=4 SV=1
          Length = 412

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +3

Query: 66  WVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDK 176
           W  PDE+ L +FL  +N+F+P RV+K++++IK   DK
Sbjct: 298 WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDK 334


>tr|Q54NU0|Q54NU0_DICDI XPG OS=Dictyostelium discoideum GN=repG PE=4
           SV=1
          Length = 384

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +3

Query: 39  VPEDQWEP-QWVGPDEQDLRSFLVDQNSFNPVRVMKAIDRIKTIRDKSL 182
           +P DQ  P QW  PD + L  FLV++  F+ VRV + I+++K  ++ S+
Sbjct: 290 IPADQLPPFQWKDPDVEGLNKFLVEEMGFSDVRVAQGIEKLKKFKNTSV 338