NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914794
Clone id YMU001_000062_H11
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACAGGATTGGCACTGCCGTTCCATCTAATTCAGAGGTCACTCTTATGTCCTTTTTTGGA
CCCATATATGGATGTGATCCATGTCGTCAGCTTGAGAGCGGGCAAGAAAGTCAGAGAAGA
CATATGGAAGCCCTTACACACGACTCCCCAGTGCGGTCGGCCATGTCTCCCTTGATTTAT
TCAAATTGTTCTAATGTAGTCGTATGGGGGTTTCAAGGGTGTATGATAGATATCAGGATT
GCCGACTCACATAGGGTTCTTCATAGCTGCCTAAATAGATTGTGCGTGATCAAGCATCCG
GCAAGCAACTTGAAGTACGGCACCATCCTTTAGGCAGGATTTACCTTTTAGTGATAGCAA
TAGTAGCTTCGAAATTCCAATGGTGGCATCAGTTCGATTTTGCCTAGTGTACGGGATAGA
CATTCTATCCCTTAGCAGATAGCTATTTAGTATCACTTGTTTAATTGGGTTGAGCATTGC
TCTCATTTTCCACAAATAACTGTAAAGAGCAGAGCTTATTGAAGT
■■Homology search results ■■ -
sp_hit_id O07151
Definition sp|O07151|SYT_MYCLE Threonyl-tRNA synthetase OS=Mycobacterium leprae
Align length 28
Score (bit) 30.8
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914794|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H11.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O07151|SYT_MYCLE Threonyl-tRNA synthetase OS=Mycobacterium le...    31   4.1  
sp|Q0S1E2|SYT_RHOSR Threonyl-tRNA synthetase OS=Rhodococcus sp. ...    30   7.1  
sp|A0PSZ4|SYT_MYCUA Threonyl-tRNA synthetase OS=Mycobacterium ul...    30   7.1  
sp|A1T868|SYT_MYCVP Threonyl-tRNA synthetase OS=Mycobacterium va...    30   9.2  
sp|Q1B9T4|SYT_MYCSS Threonyl-tRNA synthetase OS=Mycobacterium sp...    30   9.2  
sp|A1UF79|SYT_MYCSK Threonyl-tRNA synthetase OS=Mycobacterium sp...    30   9.2  
sp|A3PYU0|SYT_MYCSJ Threonyl-tRNA synthetase OS=Mycobacterium sp...    30   9.2  
sp|A0QWG2|SYT_MYCS2 Threonyl-tRNA synthetase OS=Mycobacterium sm...    30   9.2  

>sp|O07151|SYT_MYCLE Threonyl-tRNA synthetase OS=Mycobacterium
           leprae GN=thrS PE=3 SV=1
          Length = 702

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 168 RHGRPHWGVVCKGFHMSSLTFLPALKLT 85
           R+G   WG +C+G H+ +   +PA KLT
Sbjct: 208 RNGERIWGDLCRGPHIPTTKHIPAFKLT 235


>sp|Q0S1E2|SYT_RHOSR Threonyl-tRNA synthetase OS=Rhodococcus sp.
           (strain RHA1) GN=thrS PE=3 SV=1
          Length = 685

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 168 RHGRPHWGVVCKGFHMSSLTFLPALKLT 85
           R G   WG +C+G H+ +   +PA KLT
Sbjct: 191 RTGEKVWGDLCRGPHIPTTKHIPAFKLT 218


>sp|A0PSZ4|SYT_MYCUA Threonyl-tRNA synthetase OS=Mycobacterium
           ulcerans (strain Agy99) GN=thrS PE=3 SV=1
          Length = 691

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
           WG +C+G H+S+   +PA KLT
Sbjct: 203 WGDLCRGPHISTTKHIPAFKLT 224


>sp|A1T868|SYT_MYCVP Threonyl-tRNA synthetase OS=Mycobacterium
           vanbaalenii (strain DSM 7251 / PYR-1) GN=thrS PE=3 SV=1
          Length = 691

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
           WG +C+G H+ +  ++PA KLT
Sbjct: 200 WGDLCRGPHIPTTRYIPAFKLT 221


>sp|Q1B9T4|SYT_MYCSS Threonyl-tRNA synthetase OS=Mycobacterium sp.
           (strain MCS) GN=thrS PE=3 SV=1
          Length = 684

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
           WG +C+G H+ +  ++PA KLT
Sbjct: 196 WGDLCRGPHIPTTKYIPAFKLT 217


>sp|A1UF79|SYT_MYCSK Threonyl-tRNA synthetase OS=Mycobacterium sp.
           (strain KMS) GN=thrS PE=3 SV=1
          Length = 684

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
           WG +C+G H+ +  ++PA KLT
Sbjct: 196 WGDLCRGPHIPTTKYIPAFKLT 217


>sp|A3PYU0|SYT_MYCSJ Threonyl-tRNA synthetase OS=Mycobacterium sp.
           (strain JLS) GN=thrS PE=3 SV=1
          Length = 684

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
           WG +C+G H+ +  ++PA KLT
Sbjct: 196 WGDLCRGPHIPTTKYIPAFKLT 217


>sp|A0QWG2|SYT_MYCS2 Threonyl-tRNA synthetase OS=Mycobacterium
           smegmatis GN=thrS PE=3 SV=1
          Length = 684

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
           WG +C+G H+ +  ++PA KLT
Sbjct: 196 WGDLCRGPHIPTTRYIPAFKLT 217
tr_hit_id A4FB89
Definition tr|A4FB89|A4FB89_SACEN Threonyl-tRNA synthetase OS=Saccharopolyspora erythraea (strain NRRL 23338)
Align length 34
Score (bit) 33.9
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914794|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H11.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4FB89|A4FB89_SACEN Threonyl-tRNA synthetase OS=Saccharopolys...    34   5.2  
tr|Q16ML0|Q16ML0_AEDAE Zinc finger protein (Fragment) OS=Aedes a...    34   5.2  
tr|A9IG16|A9IG16_BORPD Putative integrase/recombinase OS=Bordete...    33   6.7  
tr|Q11FQ4|Q11FQ4_MESSB Transcriptional regulator, LysR family OS...    33   8.6  
tr|Q2LSG9|Q2LSG9_SYNAS Methyltransferase OS=Syntrophus aciditrop...    33   8.8  
tr|B4JX17|B4JX17_DROGR GH17656 OS=Drosophila grimshawi GN=GH1765...    33   8.8  

>tr|A4FB89|A4FB89_SACEN Threonyl-tRNA synthetase
           OS=Saccharopolyspora erythraea (strain NRRL 23338)
           GN=thrS PE=3 SV=1
          Length = 674

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 189 TI*INQGRHGRPHWGVVCKGFHMSSLTFLPALKL 88
           T+  N  RHG   WG +C+G H+    ++PA KL
Sbjct: 174 TVYDNVDRHGEVVWGDLCRGPHVPHTRYIPAFKL 207


>tr|Q16ML0|Q16ML0_AEDAE Zinc finger protein (Fragment) OS=Aedes
           aegypti GN=AAEL012263 PE=4 SV=1
          Length = 669

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 22/52 (42%), Positives = 24/52 (46%)
 Frame = +1

Query: 67  YGCDPCRQLESGQESQRRHMEALTHDSPVRSAMSPLIYSNCSNVVVWGFQGC 222
           Y CD C    S Q S RRH +   HD+P RS   P     C  V  W FQ C
Sbjct: 317 YKCDQCSASFSLQSSLRRHQK--HHDNPDRSYSCPY----CKRVFKW-FQNC 361


>tr|A9IG16|A9IG16_BORPD Putative integrase/recombinase OS=Bordetella
           petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
           GN=Bpet1498 PE=4 SV=1
          Length = 419

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
 Frame = +1

Query: 151 VRSAMSPLIYSNCSNVVVWGFQGCMIDIRIADSHRVLHSCLNRLCVI------------- 291
           VRS  +P+ +   S++V    +   I +  A SH + HSC+  L                
Sbjct: 331 VRSPYTPMNHWTVSSMVAGHLRSIGIQVARAGSHTLRHSCVQHLVEADLPFKVIGDYVGH 390

Query: 292 KHPASNLKYGTI 327
           +HPAS L YG +
Sbjct: 391 RHPASTLVYGKV 402


>tr|Q11FQ4|Q11FQ4_MESSB Transcriptional regulator, LysR family
           OS=Mesorhizobium sp. (strain BNC1) GN=Meso_2386 PE=4
           SV=1
          Length = 296

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 133 GLPYVFSDFLARSQADDMDHIHIW 62
           G PY FSDF+    ++  DH+H+W
Sbjct: 181 GAPYSFSDFVVLDSSNTPDHLHLW 204


>tr|Q2LSG9|Q2LSG9_SYNAS Methyltransferase OS=Syntrophus
           aciditrophicus (strain SB) GN=SYNAS_11540 PE=4 SV=1
          Length = 208

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 168 RHGRPHWGVVCKGFHMSSLTFLPALKLT 85
           R  R H+GV+C GF ++ + FL AL  T
Sbjct: 83  REARKHYGVICHGFEVNPIAFLKALIFT 110


>tr|B4JX17|B4JX17_DROGR GH17656 OS=Drosophila grimshawi GN=GH17656
            PE=4 SV=1
          Length = 1789

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 79   PCRQLESGQESQRRHMEALTHDSPVRSAMSPLIYSNCSNVVVWGFQGCMIDIRIADSHRV 258
            P +Q E  QE +  H + L  +     +M PL      NV+V  F G + DI + +   V
Sbjct: 1467 PDQQEEHEQEEEHEHEQELDQEMEATGSMPPLSQQVTDNVIVGDFNGNLDDIDMVEDGVV 1526

Query: 259  LHS 267
            + S
Sbjct: 1527 VAS 1529