BP914794
Clone id YMU001_000062_H11
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000062_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AACAGGATTGGCACTGCCGTTCCATCTAATTCAGAGGTCACTCTTATGTCCTTTTTTGGA
CCCATATATGGATGTGATCCATGTCGTCAGCTTGAGAGCGGGCAAGAAAGTCAGAGAAGA
CATATGGAAGCCCTTACACACGACTCCCCAGTGCGGTCGGCCATGTCTCCCTTGATTTAT
TCAAATTGTTCTAATGTAGTCGTATGGGGGTTTCAAGGGTGTATGATAGATATCAGGATT
GCCGACTCACATAGGGTTCTTCATAGCTGCCTAAATAGATTGTGCGTGATCAAGCATCCG
GCAAGCAACTTGAAGTACGGCACCATCCTTTAGGCAGGATTTACCTTTTAGTGATAGCAA
TAGTAGCTTCGAAATTCCAATGGTGGCATCAGTTCGATTTTGCCTAGTGTACGGGATAGA
CATTCTATCCCTTAGCAGATAGCTATTTAGTATCACTTGTTTAATTGGGTTGAGCATTGC
TCTCATTTTCCACAAATAACTGTAAAGAGCAGAGCTTATTGAAGT
■■Homology search results ■■ -
sp_hit_id O07151
Definition sp|O07151|SYT_MYCLE Threonyl-tRNA synthetase OS=Mycobacterium leprae
Align length 28
Score (bit) 30.8
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914794|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H11.
(525 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O07151|SYT_MYCLE Threonyl-tRNA synthetase OS=Mycobacterium le... 31 4.1
sp|Q0S1E2|SYT_RHOSR Threonyl-tRNA synthetase OS=Rhodococcus sp. ... 30 7.1
sp|A0PSZ4|SYT_MYCUA Threonyl-tRNA synthetase OS=Mycobacterium ul... 30 7.1
sp|A1T868|SYT_MYCVP Threonyl-tRNA synthetase OS=Mycobacterium va... 30 9.2
sp|Q1B9T4|SYT_MYCSS Threonyl-tRNA synthetase OS=Mycobacterium sp... 30 9.2
sp|A1UF79|SYT_MYCSK Threonyl-tRNA synthetase OS=Mycobacterium sp... 30 9.2
sp|A3PYU0|SYT_MYCSJ Threonyl-tRNA synthetase OS=Mycobacterium sp... 30 9.2
sp|A0QWG2|SYT_MYCS2 Threonyl-tRNA synthetase OS=Mycobacterium sm... 30 9.2

>sp|O07151|SYT_MYCLE Threonyl-tRNA synthetase OS=Mycobacterium
leprae GN=thrS PE=3 SV=1
Length = 702

Score = 30.8 bits (68), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1

Query: 168 RHGRPHWGVVCKGFHMSSLTFLPALKLT 85
R+G WG +C+G H+ + +PA KLT
Sbjct: 208 RNGERIWGDLCRGPHIPTTKHIPAFKLT 235


>sp|Q0S1E2|SYT_RHOSR Threonyl-tRNA synthetase OS=Rhodococcus sp.
(strain RHA1) GN=thrS PE=3 SV=1
Length = 685

Score = 30.0 bits (66), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1

Query: 168 RHGRPHWGVVCKGFHMSSLTFLPALKLT 85
R G WG +C+G H+ + +PA KLT
Sbjct: 191 RTGEKVWGDLCRGPHIPTTKHIPAFKLT 218


>sp|A0PSZ4|SYT_MYCUA Threonyl-tRNA synthetase OS=Mycobacterium
ulcerans (strain Agy99) GN=thrS PE=3 SV=1
Length = 691

Score = 30.0 bits (66), Expect = 7.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
WG +C+G H+S+ +PA KLT
Sbjct: 203 WGDLCRGPHISTTKHIPAFKLT 224


>sp|A1T868|SYT_MYCVP Threonyl-tRNA synthetase OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=thrS PE=3 SV=1
Length = 691

Score = 29.6 bits (65), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
WG +C+G H+ + ++PA KLT
Sbjct: 200 WGDLCRGPHIPTTRYIPAFKLT 221


>sp|Q1B9T4|SYT_MYCSS Threonyl-tRNA synthetase OS=Mycobacterium sp.
(strain MCS) GN=thrS PE=3 SV=1
Length = 684

Score = 29.6 bits (65), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
WG +C+G H+ + ++PA KLT
Sbjct: 196 WGDLCRGPHIPTTKYIPAFKLT 217


>sp|A1UF79|SYT_MYCSK Threonyl-tRNA synthetase OS=Mycobacterium sp.
(strain KMS) GN=thrS PE=3 SV=1
Length = 684

Score = 29.6 bits (65), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
WG +C+G H+ + ++PA KLT
Sbjct: 196 WGDLCRGPHIPTTKYIPAFKLT 217


>sp|A3PYU0|SYT_MYCSJ Threonyl-tRNA synthetase OS=Mycobacterium sp.
(strain JLS) GN=thrS PE=3 SV=1
Length = 684

Score = 29.6 bits (65), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
WG +C+G H+ + ++PA KLT
Sbjct: 196 WGDLCRGPHIPTTKYIPAFKLT 217


>sp|A0QWG2|SYT_MYCS2 Threonyl-tRNA synthetase OS=Mycobacterium
smegmatis GN=thrS PE=3 SV=1
Length = 684

Score = 29.6 bits (65), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1

Query: 150 WGVVCKGFHMSSLTFLPALKLT 85
WG +C+G H+ + ++PA KLT
Sbjct: 196 WGDLCRGPHIPTTRYIPAFKLT 217


tr_hit_id A4FB89
Definition tr|A4FB89|A4FB89_SACEN Threonyl-tRNA synthetase OS=Saccharopolyspora erythraea (strain NRRL 23338)
Align length 34
Score (bit) 33.9
E-value 5.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914794|Adiantum capillus-veneris mRNA, clone:
YMU001_000062_H11.
(525 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4FB89|A4FB89_SACEN Threonyl-tRNA synthetase OS=Saccharopolys... 34 5.2
tr|Q16ML0|Q16ML0_AEDAE Zinc finger protein (Fragment) OS=Aedes a... 34 5.2
tr|A9IG16|A9IG16_BORPD Putative integrase/recombinase OS=Bordete... 33 6.7
tr|Q11FQ4|Q11FQ4_MESSB Transcriptional regulator, LysR family OS... 33 8.6
tr|Q2LSG9|Q2LSG9_SYNAS Methyltransferase OS=Syntrophus aciditrop... 33 8.8
tr|B4JX17|B4JX17_DROGR GH17656 OS=Drosophila grimshawi GN=GH1765... 33 8.8

>tr|A4FB89|A4FB89_SACEN Threonyl-tRNA synthetase
OS=Saccharopolyspora erythraea (strain NRRL 23338)
GN=thrS PE=3 SV=1
Length = 674

Score = 33.9 bits (76), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1

Query: 189 TI*INQGRHGRPHWGVVCKGFHMSSLTFLPALKL 88
T+ N RHG WG +C+G H+ ++PA KL
Sbjct: 174 TVYDNVDRHGEVVWGDLCRGPHVPHTRYIPAFKL 207


>tr|Q16ML0|Q16ML0_AEDAE Zinc finger protein (Fragment) OS=Aedes
aegypti GN=AAEL012263 PE=4 SV=1
Length = 669

Score = 33.9 bits (76), Expect = 5.2
Identities = 22/52 (42%), Positives = 24/52 (46%)
Frame = +1

Query: 67 YGCDPCRQLESGQESQRRHMEALTHDSPVRSAMSPLIYSNCSNVVVWGFQGC 222
Y CD C S Q S RRH + HD+P RS P C V W FQ C
Sbjct: 317 YKCDQCSASFSLQSSLRRHQK--HHDNPDRSYSCPY----CKRVFKW-FQNC 361


>tr|A9IG16|A9IG16_BORPD Putative integrase/recombinase OS=Bordetella
petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
GN=Bpet1498 PE=4 SV=1
Length = 419

Score = 33.5 bits (75), Expect = 6.7
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Frame = +1

Query: 151 VRSAMSPLIYSNCSNVVVWGFQGCMIDIRIADSHRVLHSCLNRLCVI------------- 291
VRS +P+ + S++V + I + A SH + HSC+ L
Sbjct: 331 VRSPYTPMNHWTVSSMVAGHLRSIGIQVARAGSHTLRHSCVQHLVEADLPFKVIGDYVGH 390

Query: 292 KHPASNLKYGTI 327
+HPAS L YG +
Sbjct: 391 RHPASTLVYGKV 402


>tr|Q11FQ4|Q11FQ4_MESSB Transcriptional regulator, LysR family
OS=Mesorhizobium sp. (strain BNC1) GN=Meso_2386 PE=4
SV=1
Length = 296

Score = 33.1 bits (74), Expect = 8.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3

Query: 133 GLPYVFSDFLARSQADDMDHIHIW 62
G PY FSDF+ ++ DH+H+W
Sbjct: 181 GAPYSFSDFVVLDSSNTPDHLHLW 204


>tr|Q2LSG9|Q2LSG9_SYNAS Methyltransferase OS=Syntrophus
aciditrophicus (strain SB) GN=SYNAS_11540 PE=4 SV=1
Length = 208

Score = 33.1 bits (74), Expect = 8.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1

Query: 168 RHGRPHWGVVCKGFHMSSLTFLPALKLT 85
R R H+GV+C GF ++ + FL AL T
Sbjct: 83 REARKHYGVICHGFEVNPIAFLKALIFT 110


>tr|B4JX17|B4JX17_DROGR GH17656 OS=Drosophila grimshawi GN=GH17656
PE=4 SV=1
Length = 1789

Score = 33.1 bits (74), Expect = 8.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1

Query: 79 PCRQLESGQESQRRHMEALTHDSPVRSAMSPLIYSNCSNVVVWGFQGCMIDIRIADSHRV 258
P +Q E QE + H + L + +M PL NV+V F G + DI + + V
Sbjct: 1467 PDQQEEHEQEEEHEHEQELDQEMEATGSMPPLSQQVTDNVIVGDFNGNLDDIDMVEDGVV 1526

Query: 259 LHS 267
+ S
Sbjct: 1527 VAS 1529