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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914800
Clone id YMU001_000063_A06
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATTCGCGGCCGCGAATTGAGCCGCATAGATATACATAACTTGTTAAGAAAAAAAATAGT
TCGTTAAAGCTTAAGGCACAAAAATTGTTACCGGGTAACATCACGATTACATCATTGGAA
TCTATTTACGTTTGCGTCACAGCAAAACTGGACACTCTGTATGGCATTATTTTGAAAAGC
CTGAGTAAGGGCCAAATGCCCTTGTTACACCAAAGCAGACGGCTCTGACGGACGTCTCAA
AACAATCCGTGTGACAAACACTAGTGCTTACAACAAACCACACACTCCAAATGCCTCGTG
GTTTTTGATGACAGACTCAGCATAGGTATCATGTTTTGAGCACCTAACCAAAATATCCAT
GCTGGCCTCCCCCACCATCCTATAAGCCACTTTACTACTGGGCTTTCATACAATCTAGAA
CTCTTCACACCACTTGTCGAGAGTGAGAACACCAATACGCAATATGCTCATCTTTGCGAT
GGCCGCTGACAAGCCCACCACATTGCAAACAGATGAAGCTACTGCCATCTGCAGATGCAT
CCAG
■■Homology search results ■■ -
sp_hit_id Q3SHE5
Definition sp|Q3SHE5|PSD_THIDA Phosphatidylserine decarboxylase proenzyme OS=Thiobacillus denitrificans (strain ATCC 25259)
Align length 16
Score (bit) 30.4
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914800|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_A06.
         (526 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3SHE5|PSD_THIDA Phosphatidylserine decarboxylase proenzyme O...    30   5.3  
sp|Q89B31|EFP_BUCBP Elongation factor P OS=Buchnera aphidicola s...    30   5.4  

>sp|Q3SHE5|PSD_THIDA Phosphatidylserine decarboxylase proenzyme
           OS=Thiobacillus denitrificans (strain ATCC 25259) GN=psd
           PE=3 SV=1
          Length = 208

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 380 VVKWLIGWWGRPAWIF 333
           +  WLIGWW  P WI+
Sbjct: 23  IATWLIGWWSVPFWIW 38


>sp|Q89B31|EFP_BUCBP Elongation factor P OS=Buchnera aphidicola
           subsp. Baizongia pistaciae GN=efp PE=3 SV=1
          Length = 189

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +2

Query: 5   RIDIHNLLRKKIVR*SLRHKNCYRVTSRLHHWNLFTFASQQNWT 136
           R+ + NLL KK++  + ++ +C+++ + +     + F  ++ WT
Sbjct: 40  RVRLKNLLNKKLIDKTCKYSDCFKIANVIEITATYMFTDKKVWT 83
tr_hit_id Q9FIJ8
Definition tr|Q9FIJ8|Q9FIJ8_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23 OS=Arabidopsis thaliana
Align length 34
Score (bit) 67.0
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914800|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_A06.
         (526 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FIJ8|Q9FIJ8_ARATH Arabidopsis thaliana genomic DNA, chromos...    67   6e-10
tr|Q3E8E9|Q3E8E9_ARATH Uncharacterized protein At5g47830.2 OS=Ar...    67   6e-10
tr|Q1ECG7|Q1ECG7_ARATH At5g47830 OS=Arabidopsis thaliana PE=2 SV=1     67   6e-10
tr|A9NN14|A9NN14_PICSI Putative uncharacterized protein OS=Picea...    67   6e-10
tr|A7NU06|A7NU06_VITVI Chromosome chr18 scaffold_1, whole genome...    67   7e-10
tr|A9NSL4|A9NSL4_PICSI Putative uncharacterized protein OS=Picea...    65   2e-09
tr|A9NYK9|A9NYK9_PICSI Putative uncharacterized protein OS=Picea...    62   1e-08
tr|Q6ET41|Q6ET41_ORYSJ Os02g0158600 protein OS=Oryza sativa subs...    61   3e-08
tr|B6U5J3|B6U5J3_MAIZE Putative uncharacterized protein OS=Zea m...    61   3e-08
tr|A9SW11|A9SW11_PHYPA Predicted protein (Fragment) OS=Physcomit...    61   3e-08
tr|A2X145|A2X145_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A9S6B0|A9S6B0_PHYPA Predicted protein OS=Physcomitrella paten...    60   9e-08
tr|Q2HTP5|Q2HTP5_MEDTR Putative uncharacterized protein OS=Medic...    59   2e-07
tr|B8BQ34|B8BQ34_THAPS Predicted protein OS=Thalassiosira pseudo...    39   0.16 
tr|A9WUQ5|A9WUQ5_RENSM Permease OS=Renibacterium salmoninarum (s...    33   8.6  
tr|B7AZ86|B7AZ86_9FIRM Putative uncharacterized protein OS=Mitsu...    33   8.8  

>tr|Q9FIJ8|Q9FIJ8_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MCA23 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 202

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 29/34 (85%), Positives = 31/34 (91%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWCSH 425
           LDA ADGSSFICLQCGGLVS HR+DEH AYWCS+
Sbjct: 168 LDAFADGSSFICLQCGGLVSIHRRDEHYAYWCSN 201


>tr|Q3E8E9|Q3E8E9_ARATH Uncharacterized protein At5g47830.2
           OS=Arabidopsis thaliana GN=At5g47830 PE=4 SV=1
          Length = 123

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 29/34 (85%), Positives = 31/34 (91%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWCSH 425
           LDA ADGSSFICLQCGGLVS HR+DEH AYWCS+
Sbjct: 89  LDAFADGSSFICLQCGGLVSIHRRDEHYAYWCSN 122


>tr|Q1ECG7|Q1ECG7_ARATH At5g47830 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 173

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 29/34 (85%), Positives = 31/34 (91%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWCSH 425
           LDA ADGSSFICLQCGGLVS HR+DEH AYWCS+
Sbjct: 139 LDAFADGSSFICLQCGGLVSIHRRDEHYAYWCSN 172


>tr|A9NN14|A9NN14_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWCSHSR 419
           +DA ADGSSFICL+CGGLVS  RKDEHIAYWCS +R
Sbjct: 137 MDAFADGSSFICLRCGGLVSNTRKDEHIAYWCSDAR 172


>tr|A7NU06|A7NU06_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014869001
           PE=4 SV=1
          Length = 167

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 28/32 (87%), Positives = 29/32 (90%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWC 431
           LDA +DGSSFICLQCGGLVS HRKDEH AYWC
Sbjct: 133 LDAFSDGSSFICLQCGGLVSNHRKDEHYAYWC 164


>tr|A9NSL4|A9NSL4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWCS 428
           +DA ADGSSFICL+CGGLVS  RKDEHIAYWCS
Sbjct: 137 MDAFADGSSFICLRCGGLVSNTRKDEHIAYWCS 169


>tr|A9NYK9|A9NYK9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 169

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 25/32 (78%), Positives = 29/32 (90%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWC 431
           +DA ADGSSF+CLQCGGLVS  R+DEH+AYWC
Sbjct: 134 MDAFADGSSFVCLQCGGLVSNLRRDEHLAYWC 165


>tr|Q6ET41|Q6ET41_ORYSJ Os02g0158600 protein OS=Oryza sativa subsp.
           japonica GN=P0419H03.39 PE=2 SV=1
          Length = 178

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWC 431
           LDA ADGSSFICL+CGGL S  RKDEH+AYWC
Sbjct: 144 LDAFADGSSFICLKCGGLFSTSRKDEHLAYWC 175


>tr|B6U5J3|B6U5J3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 172

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = -1

Query: 526 LDASADGSSFICLQCGGLVSGHRKDEHIAYWC 431
           LDA ADGSSFICL+CGGL S  RKDEH+AYWC
Sbjct: 138 LDAFADGSSFICLKCGGLFSTSRKDEHLAYWC 169


>tr|A9SW11|A9SW11_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_18870 PE=4 SV=1
          Length = 147

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = -1

Query: 523 DASADGSSFICLQCGGLVSGHRKDEHIAYWCS 428
           DASADGSSF+C QCGG+VS  R+DEH++YWCS
Sbjct: 116 DASADGSSFLCQQCGGVVSNSRRDEHLSYWCS 147