BP914803 |
Clone id |
YMU001_000063_A09 |
Library |
YMU01 |
Length |
365 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000063_A09. |
Accession |
BP914803 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AATATGCATGTGCATGAGCCCAATAATACTAGAGGTTTCTCTAAAAATTACATATATATC TTCATGGAAATATGTAAACGTATTGACGATACAAAAATCTGAAACTGTCTCTATATCCAC TGGTCTAAAAGAGCATCTGCAACTAAAACCCTCTCATGGTAGCATCTTGTACTTTACTCC GTAAAAGGCTAATGACACCAGCAGGGTCCTGAGATCCAAAAACTGAGCTCCCAGCAACTA TGCAATTTGCACCGGCCTTAGCAGCTTCTTCGATGGTTGAGGGGCCTAGCCCTCCATCTA CCTCAATATGTAGCCAAGGAAATTTCTTCCGAAGGATATTAACTTTGGTCATCATTTCTG GAATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SE42 |
Definition |
sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica |
Align length |
66 |
Score (bit) |
93.6 |
E-value |
3.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914803|Adiantum capillus-veneris mRNA, clone: YMU001_000063_A09. (365 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic... 94 3e-19 sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gos... 79 7e-15 sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida gl... 78 1e-14 sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomy... 77 3e-14 sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus muscul... 76 5e-14 sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abel... 76 6e-14 sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapie... 76 6e-14 sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosacc... 75 1e-13 sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacter... 65 8e-11 sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacter... 65 8e-11 sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacter... 63 4e-10 sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyc... 56 6e-08 sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocys... 51 2e-06 sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplasti... 50 5e-06 sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplasti... 49 6e-06 sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplasti... 48 1e-05 sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella f... 44 2e-04 sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichi... 44 2e-04 sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichi... 44 2e-04 sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichi... 44 2e-04 sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilu... 44 3e-04 sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera a... 44 3e-04 sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus s... 42 7e-04 sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex ae... 42 7e-04 sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=... 42 0.001 sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal... 42 0.001 sp|Q48907|HPS_METAM 3-hexulose-6-phosphate synthase OS=Methylomo... 42 0.001 sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase OS=Methanocal... 40 0.003 sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia m... 40 0.005 sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacte... 39 0.008
>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1 Length = 228
Score = 93.6 bits (231), Expect = 3e-19 Identities = 46/66 (69%), Positives = 53/66 (80%) Frame = -2
Query: 364 IPEMMTKVNILRKKFPWLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAGVISL 185 +PEMM KV LRKK+P L IEVDGGLGPSTI+ AA AGANCIVAGSS+FG+ +P VIS Sbjct: 157 MPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISA 216
Query: 184 LRSKVQ 167 LR V+ Sbjct: 217 LRKSVE 222
>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii GN=RPE1 PE=3 SV=1 Length = 239
Score = 79.0 bits (193), Expect = 7e-15 Identities = 40/67 (59%), Positives = 49/67 (73%) Frame = -2
Query: 364 IPEMMTKVNILRKKFPWLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAGVISL 185 +P+MM KV LR+KFP L I+VDGGLG TI AAKAGAN IVAG+SVF + D VIS Sbjct: 161 MPDMMPKVAALREKFPQLDIQVDGGLGKETIPHAAKAGANVIVAGTSVFAAADQKDVISY 220
Query: 184 LRSKVQD 164 ++ V+D Sbjct: 221 MKDNVRD 227
>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata GN=RPE1 PE=3 SV=1 Length = 246
Score = 78.2 bits (191), Expect = 1e-14 Identities = 39/66 (59%), Positives = 50/66 (75%) Frame = -2
Query: 364 IPEMMTKVNILRKKFPWLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAGVISL 185 +P+MM KV LR KFP ++I+VDGGLG TI AAKAGAN IVAG+SVF + DP VIS Sbjct: 166 MPDMMPKVEALRTKFPHMNIQVDGGLGKETIGVAAKAGANVIVAGTSVFTASDPHEVISF 225
Query: 184 LRSKVQ 167 ++ +V+ Sbjct: 226 MKEEVR 231
>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae GN=RPE1 PE=1 SV=1 Length = 238
Score = 77.0 bits (188), Expect = 3e-14 Identities = 39/63 (61%), Positives = 48/63 (76%) Frame = -2
Query: 358 EMMTKVNILRKKFPWLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAGVISLLR 179 +MM KV LR KFP L+I+VDGGLG TI +AAKAGAN IVAG+SVF + DP VIS ++ Sbjct: 165 DMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMK 224
Query: 178 SKV 170 +V Sbjct: 225 EEV 227
>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1 Length = 228
Score = 76.3 bits (186), Expect = 5e-14 Identities = 36/69 (52%), Positives = 51/69 (73%) Frame = -2
Query: 358 EMMTKVNILRKKFPWLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAGVISLLR 179 +MM KV+ LR +FP L IEVDGG+GP T+++ A+AGAN IV+GS++ S DP VI+LLR Sbjct: 155 DMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEAGANMIVSGSAIMRSDDPRAVINLLR 214
Query: 178 SKVQDATMR 152 + +A + Sbjct: 215 NVCSEAAQK 223
>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1 Length = 228
Score = 75.9 bits (185), Expect = 6e-14 Identities = 36/69 (52%), Positives = 51/69 (73%) Frame = -2
Query: 358 EMMTKVNILRKKFPWLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAGVISLLR 179 +MM KV+ LR +FP L IEVDGG+GP T+ + A+AGAN IV+GS++ S+DP VI+LLR Sbjct: 155 DMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLR 214
Query: 178 SKVQDATMR 152 + +A + Sbjct: 215 NVCSEAAQK 223
>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1 Length = 228
Score = 75.9 bits (185), Expect = 6e-14 Identities = 36/69 (52%), Positives = 51/69 (73%) Frame = -2
Query: 358 EMMTKVNILRKKFPWLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAGVISLLR 179 +MM KV+ LR +FP L IEVDGG+GP T+ + A+AGAN IV+GS++ S+DP VI+LLR Sbjct: 155 DMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLR 214
Query: 178 SKVQDATMR 152 + +A + Sbjct: 215 NVCSEAAQK 223
>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe GN=SPAC31G5.05c PE=2 SV=1 Length = 228
Score = 75.1 bits (183), Expect = 1e-13 Identities = 38/68 (55%), Positives = 49/68 (72%) Frame = -2
Query: 364 IPEMMTKVNILRKKFPWLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAGVISL 185 +PE + KV LRKK+P L++EVDGGL T++ AA AGAN IVAG++VF +Q P VIS Sbjct: 153 MPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAADAGANVIVAGTAVFHAQSPEEVISG 212
Query: 184 LRSKVQDA 161 LR+ V A Sbjct: 213 LRNSVMKA 220
>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1 Length = 229
Score = 65.5 bits (158), Expect = 8e-11 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 4/74 (5%) Frame = -2
Query: 364 IPEMMTKVNILRKKFP----WLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAG 197 IPE+++KV +RK + +E+DGG+ TIE+AA+AG +C VAGS+V+G+ DPA Sbjct: 152 IPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYGADDPAA 211
Query: 196 VISLLRSKVQDATM 155 ++ LR + A++ Sbjct: 212 AVAALRRQAGAASL 225
>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis GN=rpe PE=3 SV=1 Length = 229
Score = 65.5 bits (158), Expect = 8e-11 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 4/74 (5%) Frame = -2
Query: 364 IPEMMTKVNILRKKFP----WLHIEVDGGLGPSTIEEAAKAGANCIVAGSSVFGSQDPAG 197 IPE+++KV +RK + +E+DGG+ TIE+AA+AG +C VAGS+V+G+ DPA Sbjct: 152 IPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYGADDPAA 211
Query: 196 VISLLRSKVQDATM 155 ++ LR + A++ Sbjct: 212 AVAALRRQAGAASL 225
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PLR4 |
Definition |
tr|A7PLR4|A7PLR4_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
68 |
Score (bit) |
96.7 |
E-value |
5.0e-19 |
Report |
|