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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914806
Clone id YMU001_000063_A12
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGTGGTTGTAATGCTATGCATACAAAGAGCATCACTGCAAGCAGAACTCGGCCAAGGAC
CCTTGCAATGAATGTCAGCCTGCAATTCGGGCTGACAAGGTTACAAAGCAAAGGTCTGCT
AACAAGCAAGCAATGGGAAGGGGGACTGAGAAAGATGGATTCTCTGAAATCCAAGCATCT
GACTATGTGAACGACGGGTTTGAACAAAAGCTCCAGGCGCAAAATTCTGCACGCATGTAG
AACTTCCACGGGAGAAGAGAAAGGCATGCCTGGTGGAAAGTCCATAGTTTGAGCTCTGCA
GAGCCCTCTGGGAAGCGTAACCCATCGTGAGAGCTCGTTGGGAGATCTATTGAAATGCGC
AAACTTTCTCCTTGTGATGGGCAACCCCGGGCATCTCTTCTTGTGGATGCGTGAGCATAC
AATGCTTGAACGGCCGCATTTGAGACTACCGAATCGTAAGCAGGGCTTACCCTCCAGTGC
GAAAGAGCAGGAGAGCACCTCCGACCTCGTCAGCAGGGCCTCC
■■Homology search results ■■ -
sp_hit_id Q8TF72
Definition sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens
Align length 58
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914806|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_A12.
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens GN=SHROOM3...    32   1.8  
sp|P09275|VHS_VZVD Virion host shutoff protein OS=Varicella-zost...    32   2.4  
sp|Q8BWQ4|FTSJ1_MOUSE FtsJ methyltransferase domain-containing p...    32   2.4  
sp|Q96KM6|Z512B_HUMAN Zinc finger protein 512B OS=Homo sapiens G...    31   4.1  
sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulat...    31   4.1  
sp|Q60585|ZFP30_MOUSE Zinc finger protein 30 OS=Mus musculus GN=...    30   5.3  
sp|O50399|DNAE2_MYCTU Error-prone DNA polymerase OS=Mycobacteriu...    30   6.9  
sp|Q7TWL9|DNAE2_MYCBO Error-prone DNA polymerase OS=Mycobacteriu...    30   6.9  
sp|Q9Y2G7|ZFP30_HUMAN Zinc finger protein 30 homolog OS=Homo sap...    30   7.0  
sp|Q63540|ATX1_RAT Ataxin-1 OS=Rattus norvegicus GN=Atxn1 PE=2 SV=1    30   7.0  
sp|P18728|ZG53_XENLA Gastrula zinc finger protein XlCGF53.1 (Fra...    30   9.1  
sp|O75290|Z780A_HUMAN Zinc finger protein 780A OS=Homo sapiens G...    30   9.1  
sp|P54253|ATX1_HUMAN Ataxin-1 OS=Homo sapiens GN=ATXN1 PE=1 SV=2       30   9.1  

>sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens GN=SHROOM3 PE=1
            SV=1
          Length = 1995

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 467  SPAYDSVVSNAAVQALYAHASTRRDAR-GCPSQGESLRISIDLPTSSHDGLRFPEGSA 297
            S AY + + +A  + L A +  RRD   G P    S R     P+S+H GLR PE SA
Sbjct: 920  SRAYRNSIKDAQSRVLGATSFRRRDLELGAPVASRSWR---PRPSSAHVGLRSPEASA 974


>sp|P09275|VHS_VZVD Virion host shutoff protein OS=Varicella-zoster
           virus (strain Dumas) GN=17 PE=3 SV=1
          Length = 455

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 494 SPALSHWRVSPAYDSVVSNAAVQALYAHASTRRDA--RGCPSQGESLRISIDLPTSSHDG 321
           S ++ + + S  YDSV  N++   + +  +  +D    GCP Q +      D    S   
Sbjct: 123 SCSIKYNKTSETYDSVFRNSSTSCIPSEENKSQDMFLDGCPRQTDKTICLRDQNVCSLTS 182

Query: 320 LRFPEGSAELKLWTFHQACLSLLPWKFYMRAE 225
                G    +L  +H+ C SL+ W  Y   E
Sbjct: 183 TMPSRGHPNHRL--YHKLCASLIRWMGYAYVE 212


>sp|Q8BWQ4|FTSJ1_MOUSE FtsJ methyltransferase domain-containing
           protein 1 OS=Mus musculus GN=Ftsjd1 PE=2 SV=1
          Length = 767

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 231 CRILRLELLFKPVVHIVRCLDFRESIFLSPPSHCLLVSRPLLCNLVSP 88
           C +   E +   ++ + +CL   +    S P  CLLV  P +C+L  P
Sbjct: 546 CPVFSEESVLSELLRLTKCLPDEQGAEPSGPVKCLLVGSPAVCDLQMP 593


>sp|Q96KM6|Z512B_HUMAN Zinc finger protein 512B OS=Homo sapiens
           GN=ZNF512B PE=1 SV=1
          Length = 892

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/94 (22%), Positives = 44/94 (46%)
 Frame = -2

Query: 342 PNELSRWVTLPRGLCRAQTMDFPPGMPFSSPVEVLHACRILRLELLFKPVVHIVRCLDFR 163
           P  +SR + + + +   + +     +P + PV V     + +L  + KPV  + + +   
Sbjct: 239 PVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVP-VTKPVTVS 297

Query: 162 ESIFLSPPSHCLLVSRPLLCNLVSPNCRLTFIAR 61
             I +S P   + VSRP+  +  +P C++  + R
Sbjct: 298 RPIVVSKP---VTVSRPIAISRHTPPCKMVLLTR 328


>sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulated by
            oncogenes OS=Homo sapiens GN=CDON PE=1 SV=1
          Length = 1287

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -2

Query: 351  NRSPNELSRWVTL-----PRGLCRAQTMDFPPGMPFSSPVEVLHACR 226
            + + N +  W  L     P G C  +TM  PPG+P  SP EVL   R
Sbjct: 1240 SETENNIVSWNALILPPVPEG-CAEKTMWSPPGIPLDSPTEVLQQPR 1285


>sp|Q60585|ZFP30_MOUSE Zinc finger protein 30 OS=Mus musculus
           GN=Zfp30 PE=2 SV=2
          Length = 533

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 193 RSHSQMLGFQRIHLSQSPFPLLAC*QTFAL*PCQPELQADIHCKGPWPSSACSDALCMHS 14
           R  SQ+   Q IH  + P+  + C +TF L     + Q+    + P+    C  A  +HS
Sbjct: 434 RLFSQLTQHQSIHFGEKPYKCMECEKTFRLLSQLTQHQSIHTGEKPYDCKECGKAFRLHS 493


>sp|O50399|DNAE2_MYCTU Error-prone DNA polymerase OS=Mycobacterium
           tuberculosis GN=dnaE2 PE=2 SV=4
          Length = 1098

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
 Frame = -3

Query: 464 PAYDSVVSNAAVQALYAHAS-TRRDARGCPSQ--GESLRISI-DLPTSSHDGL----RFP 309
           P  + V S+ A   L+AH++ +  D    P +   E+ R+ +  L  + HDGL    RF 
Sbjct: 54  PGRERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFA 113

Query: 308 EGSAELKLWTFHQACLSL 255
           E +AEL + T   A LSL
Sbjct: 114 EAAAELDVRTVFGAELSL 131


>sp|Q7TWL9|DNAE2_MYCBO Error-prone DNA polymerase OS=Mycobacterium
           bovis GN=dnaE2 PE=3 SV=2
          Length = 1091

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
 Frame = -3

Query: 464 PAYDSVVSNAAVQALYAHAS-TRRDARGCPSQ--GESLRISI-DLPTSSHDGL----RFP 309
           P  + V S+ A   L+AH++ +  D    P +   E+ R+ +  L  + HDGL    RF 
Sbjct: 47  PGRERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFA 106

Query: 308 EGSAELKLWTFHQACLSL 255
           E +AEL + T   A LSL
Sbjct: 107 EAAAELDVRTVFGAELSL 124


>sp|Q9Y2G7|ZFP30_HUMAN Zinc finger protein 30 homolog OS=Homo
           sapiens GN=ZFP30 PE=2 SV=1
          Length = 519

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 193 RSHSQMLGFQRIHLSQSPFPLLAC*QTFAL*PCQPELQADIHCKGPWPSSACSDALCMHS 14
           R  SQ+   Q IH  + PF    C +TF L     + Q+    + P+    C  A  +HS
Sbjct: 420 RLFSQLTQHQSIHFGEKPFKCKECEKTFRLLSQLTQHQSIHTGEKPYDCKECGKAFRLHS 479


>sp|Q63540|ATX1_RAT Ataxin-1 OS=Rattus norvegicus GN=Atxn1 PE=2 SV=1
          Length = 789

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
 Frame = +2

Query: 212 SRRKILHACRT--STGEEKGMPGGKSIV*ALQSPLGSV-----THRESSLGDLLKCANFL 370
           SR  ++H      S+ +  G+ G   ++    +P   +     THRE+S   L   +   
Sbjct: 332 SRHVVVHPSPADYSSRDTSGVRGSVMVLPNSSTPSADLETQQATHREASPSTLNDKSG-- 389

Query: 371 LVMGNPGHLFLWMREHTMLERPHLRLPNRKQGLPSSA 481
           L +G PGH    +  HT+++  H        GLP++A
Sbjct: 390 LHLGKPGHRSYALSPHTVIQTTHSASEPLPVGLPATA 426
tr_hit_id B3QZM1
Definition tr|B3QZM1|B3QZM1_APPPP Cation transport ATPase, similar to MgtA protein OS=Apple proliferation phytoplasma
Align length 73
Score (bit) 34.7
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914806|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_A12.
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3QZM1|B3QZM1_APPPP Cation transport ATPase, similar to MgtA ...    35   3.0  
tr|B0CMS4|B0CMS4_HHV3 Host shut-off factor OS=Human herpesvirus ...    34   5.0  
tr|O68387|O68387_MYCSY Phase-variable hemagglutinin OS=Mycoplasm...    34   5.1  
tr|Q3M8G5|Q3M8G5_ANAVT Alpha/beta hydrolase fold OS=Anabaena var...    33   6.6  
tr|Q96WX7|Q96WX7_EMENI Pyrroline-5-carboxylate reductase OS=Emer...    33   8.5  

>tr|B3QZM1|B3QZM1_APPPP Cation transport ATPase, similar to MgtA
            protein OS=Apple proliferation phytoplasma GN=ATP_00221
            PE=4 SV=1
          Length = 915

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -2

Query: 210  LLFKPVVHIVRCLDFRESIFLSPPSHCLLVSRPLLCNLVSPNCRLTFIARVLGRVLL--- 40
            L    +VH +  ++FR+SIF+  PS+ L+      C L      LTF+  +L    L   
Sbjct: 825  LALSQLVHALNLINFRKSIFVVKPSNYLIKIFIFSCLLQFSTISLTFLKNILNLANLDFK 884

Query: 39   AVMLFVCIALQPL 1
              +L + ++L PL
Sbjct: 885  DFLLIIILSLTPL 897


>tr|B0CMS4|B0CMS4_HHV3 Host shut-off factor OS=Human herpesvirus 3
           PE=4 SV=1
          Length = 455

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -3

Query: 494 SPALSHWRVSPAYDSVVSNAAVQALYAHASTRRDA--RGCPSQGESLRISIDLPTSSHDG 321
           S ++ + + S  YDSV  N++   + +  +  +D    GCP Q + +    D    S   
Sbjct: 123 SCSIKYHKTSETYDSVFRNSSASCIPSEENKSQDMFLDGCPRQTDKMLCLRDQNVCSLTS 182

Query: 320 LRFPEGSAELKLWTFHQACLSLLPWKFYMRAE 225
                G    +L  +H+ C SL+ W  Y   E
Sbjct: 183 TMPSRGHPNHRL--YHKLCASLIRWMGYAYVE 212


>tr|O68387|O68387_MYCSY Phase-variable hemagglutinin OS=Mycoplasma
           synoviae GN=vlhA PE=4 SV=1
          Length = 785

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +1

Query: 49  SAKDPCNECQPAIRADKVTKQRSANKQAMGRGTEKDGFS-EIQASDYVNDGFEQKLQAQN 225
           S  D       A+  D  T++ +  K   GR    DGF  +I   DYV DG++    A+N
Sbjct: 410 SLNDTLKAATDALNGDNPTEKTAYYKPVDGRTLYWDGFMPKIVIDDYVADGYDVANNAEN 469

Query: 226 SARM*NFHGRRERHAWWKVH 285
           +        R     W+KV+
Sbjct: 470 NRAQHEAANRPLLEQWFKVN 489


>tr|Q3M8G5|Q3M8G5_ANAVT Alpha/beta hydrolase fold OS=Anabaena
           variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_3113
           PE=4 SV=1
          Length = 311

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
 Frame = -2

Query: 483 FALEGKPCLRFGSLKCGRSSIVCSRIHKKRC--PGLPITRR-----KFAHFNRSPNELSR 325
           F    KPCLR    K G   I   RI +  C  P + +          A   R+   + R
Sbjct: 73  FGFSDKPCLR--QEKNGHQVIELERIIQCLCDEPAIVVAESLGALVALALAQRNAELIGR 130

Query: 324 WVTLPRGLCRAQTMDFPPGMPFSSPVEVLHACRILRLELLFKPVVHIVRCLDFRESIF 151
            V +   +       +   +   +P+E+L     LRL  LF P+V  V  ++ R+ +F
Sbjct: 131 LVVINAPIFTESLPHWAMSILAQTPIEILQTIDDLRLAYLFAPIVREVMAIERRKVLF 188


>tr|Q96WX7|Q96WX7_EMENI Pyrroline-5-carboxylate reductase
           OS=Emericella nidulans GN=p5cr PE=2 SV=1
          Length = 283

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -3

Query: 464 PAY-----DSVVSNAAVQALYAHASTRRDARGCPSQGESLRISIDLPTSSHDGLRFPEGS 300
           PAY     + ++++A    L A  +TR  A+ C   G+ L  S D PT     +  P G+
Sbjct: 187 PAYFFAMVEHLIASATALGLPAEQATRLAAQTCLGAGKMLTESSDSPTQLRKNVTSPNGT 246

Query: 299 AELKLWTFH 273
               L TF+
Sbjct: 247 THAALETFN 255