BP914807
Clone id YMU001_000063_B01
Library
Length 342
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTACAAGACATTGATTTGTACTTGATGACCTGCCAACATAAAAATTGTACAGGTCGACTC
ATCGAAATGATTCTCGAATGCATTAACAACAAATCATGATTGGAGATATAACCTTGCAAC
AACAGCACTGCACGGATTTGTACTTGATGACCTGCAACAGAACTGCGTTAACAACAGCAT
TATCCAGCAAGTACATAAAATTGTACATTCAACTCATCAGAACAATTCTCGAATGCATTA
ACAACAAAACATGAGTGAAGACAAATCTCGAAAGCATTAACAACAAAACATGAGCAAGTA
CTCTCCAATACAAGATCAAGCCTCGACTCTCCAATACATAAA
■■Homology search results ■■ -
sp_hit_id Q5D1D6
Definition sp|Q5D1D6|GBP1_CERAE Interferon-induced guanylate-binding protein 1 OS=Cercopithecus aethiops
Align length 59
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914807|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_B01.
(342 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5D1D6|GBP1_CERAE Interferon-induced guanylate-binding protei... 29 6.4
sp|Q9W1X7|MED23_DROME Mediator of RNA polymerase II transcriptio... 29 8.3

>sp|Q5D1D6|GBP1_CERAE Interferon-induced guanylate-binding protein 1
OS=Cercopithecus aethiops GN=GBP1 PE=2 SV=1
Length = 590

Score = 29.3 bits (64), Expect = 6.4
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2

Query: 92 NHDWRYNLATTALHGFVLDDLQQNCVNNSIIQQVHKIVHSTHQNNSRMH*QQNMSEDKS 268
N W + LA FV + + +N + Q+H + TH+ S+ +N +ED +
Sbjct: 111 NDSWIFALAILLSSTFVYNSM--GTINQQAMDQLHYVTELTHRIRSKSSPDENENEDSA 167


>sp|Q9W1X7|MED23_DROME Mediator of RNA polymerase II transcription
subunit 23 OS=Drosophila melanogaster GN=MED23 PE=1 SV=1
Length = 1439

Score = 28.9 bits (63), Expect = 8.3
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +2

Query: 146 DDLQQNCVNNSIIQQVHKIVHSTHQNNSRMH*QQNMSEDKSRKH*QQNMSKYSPIQDQ 319
+ + N NN+I Q + + HQ + QQ + + ++ QQ + +Q Q
Sbjct: 1335 EKINDNTSNNAITSQTQSPMQTQHQQQPQQPHQQQQQQQQQQQQQQQQQQQQQQMQQQ 1392


tr_hit_id Q0NQ57
Definition tr|Q0NQ57|Q0NQ57_COWPX Ankyrin-like protein OS=Cowpox virus
Align length 85
Score (bit) 32.7
E-value 9.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914807|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_B01.
(342 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0NQ57|Q0NQ57_COWPX Ankyrin-like protein OS=Cowpox virus GN=C... 33 9.3
tr|B1KHI2|B1KHI2_SHEWM UBA/THIF-type NAD/FAD binding protein OS=... 33 9.3
tr|A7S9G6|A7S9G6_NEMVE Predicted protein (Fragment) OS=Nematoste... 28 9.8

>tr|Q0NQ57|Q0NQ57_COWPX Ankyrin-like protein OS=Cowpox virus
GN=CPXV_GER91_3_023 PE=4 SV=1
Length = 668

Score = 32.7 bits (73), Expect = 9.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +3

Query: 87 QQIMIGDITLQQ----QHCTDLYLMTCNRTALTTALSSKYIKLYIQLIRTILECINNKT* 254
++IM+G T+ +H + N L SK K+Y++ I + I
Sbjct: 580 KKIMVGGNTVFSLIFTEHGAKIIHRYANNPELREYYESKQNKIYVEAYDIISDAIVKHNK 639

Query: 255 VKTNLESINNKT*ASTLQYKIKPRL 329
+ N+ES+++ T S L Y IK ++
Sbjct: 640 IHKNIESVDDNTYISNLPYTIKYKI 664


>tr|B1KHI2|B1KHI2_SHEWM UBA/THIF-type NAD/FAD binding protein
OS=Shewanella woodyi (strain ATCC 51908 / MS32)
GN=Swoo_2590 PE=4 SV=1
Length = 264

Score = 32.7 bits (73), Expect = 9.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3

Query: 105 DITLQQQHCTDLYLM----TCNRTALTTALSSKYIKLYIQLIRTILECINN 245
DI + C L LM TC ++T LS+K I YI+ + +L+C +N
Sbjct: 80 DIGEYKSKCASLKLMQRKPTCEVQSITQRLSTKNINRYIEGVNLVLDCSDN 130


>tr|A7S9G6|A7S9G6_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g109917 PE=4 SV=1
Length = 149

Score = 27.7 bits (60), Expect(2) = 9.8
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3

Query: 133 VQCCCCKVIS-PIMICC*CIRES 68
V CC C + S P+++CC C+ S
Sbjct: 53 VVCCHCVITSKPVVVCCHCVTTS 75



Score = 24.3 bits (51), Expect(2) = 9.8
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = -1

Query: 285 CC*CFRDLSSLMFCC*CIRELF**VECTILCTCWIMLLLTQFCCRSSSTN 136
CC C ++ CC C+ V C C C I CC +T+
Sbjct: 3 CCHCVITSEPVVVCCHCVTTSKPVVVC---CHCVITSEPVVVCCHCVTTS 49