BP914809
Clone id YMU001_000063_B03
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTGTAACCTAGCATAGGAGACCACTCTTGAATGCACAAAGGCAGCAAAAAACCAACGGGA
AAAAATCTAACTTCTAGAGCCCCGCAAGAGGCCAACAAGTGGTAAATCGGTGGAAAGTCG
CCCAAATGCTACCAAAACTCATGGGTAGGAGCATCTCGACATGCTCTACAAGGCTATATA
GCCCACATGGCCATAAGGCGACCCGAAGTGGGACTAAGCTTCAGAAAACGGCATCGGACA
CACAAACCGTCAATTGGCTCTCATGGCCAAACTGTATGTCCGTATGCCACCAAACTTCAC
AAGCGGCTTGCCTAGACCATCAACAACCAAGTCCTATGGTGGTAGACCACCACAAGTCAT
CGACGGCATGCAAACGCAACCATAGGCGCTTCCAGAGCGACAAATCGCCAAACGGAGCTC
CGACGAAGCCAAAGCCAACAAAAACCATATGGCAAGGTTCCC
■■Homology search results ■■ -
sp_hit_id Q3UIW5
Definition sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus
Align length 130
Score (bit) 32.3
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914809|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_B03.
(462 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=... 32 1.0
sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila ... 32 1.3
sp|P76072|STFR_ECOLI Side tail fiber protein homolog from lambdo... 32 1.3
sp|Q9RRF6|Y2536_DEIRA UPF0190 protein DR_2536 OS=Deinococcus rad... 30 5.0
sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus ... 30 5.0
sp|A8XXB0|CCD55_CAEBR Coiled-coil domain-containing protein 55 h... 30 5.0
sp|P77515|STFQ_ECOLI Side tail fiber protein homolog from lambdo... 30 5.1
sp|P20033|PDGFA_MOUSE Platelet-derived growth factor subunit A O... 30 6.5
sp|P13698|PDGFA_XENLA Platelet-derived growth factor subunit A O... 29 8.5
sp|P28576|PDGFA_RAT Platelet-derived growth factor subunit A OS=... 29 8.5
sp|P34007|PDGFA_RABIT Platelet-derived growth factor subunit A O... 29 8.5
sp|P04085|PDGFA_HUMAN Platelet-derived growth factor subunit A O... 29 8.5

>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus
GN=Rnf10 PE=2 SV=2
Length = 804

Score = 32.3 bits (72), Expect = 1.0
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +2

Query: 77 EPRKRPTSGKSVESRPNAT--KTHG*EHLDMLYKAI*PTWP*GDPKWD*ASENGIGHTNR 250
+P + ++G + ES+P + ++G + + + P++P +EN + R
Sbjct: 35 QPPRSASAGPAGESKPKSDGKNSNGSKRYNRKRE---PSYP--------KNENFSNQSRR 83

Query: 251 QLALMAKLYVRMPPNFTSGLPRPSTTKSYGGRPPQVIDGMQTQP*ALPERQIAKRSSDEA 430
+ +K + +MPP G +P ++ S GGR +V + + + + S
Sbjct: 84 SNSQKSKTFNKMPPQRGGGSSKPFSSSSNGGRRDEVAEAQRAE-------FSPAQFSGPK 136

Query: 431 KANKNHMARF 460
K N NH+ F
Sbjct: 137 KINLNHLLNF 146


>sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila
pseudoobscura pseudoobscura GN=rno PE=3 SV=2
Length = 3313

Score = 32.0 bits (71), Expect = 1.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Frame = +2

Query: 287 PPNFTSGLPRPSTTKSYGGRPPQVIDGMQTQP*A-------------LPERQIAKRSSDE 427
PP P PST+ + +PP + T P A +P+RQ AK+++++
Sbjct: 1225 PPKVPREPPAPSTSSTEKEKPPPPAEAKSTAPAAKPTAAKTSFAVSYVPQRQAAKKAAEQ 1284

Query: 428 AKANK 442
K++K
Sbjct: 1285 LKSSK 1289


>sp|P76072|STFR_ECOLI Side tail fiber protein homolog from lambdoid
prophage Rac OS=Escherichia coli (strain K12) GN=stfR
PE=3 SV=2
Length = 1120

Score = 32.0 bits (71), Expect = 1.3
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1

Query: 130 YQNSWVGASRHALQGYIAHMAIRRPEVGLSFRKRHRTHKPSIGSHGQTV 276
Y S GA H+L G A VG+ TH +IGSHG T+
Sbjct: 1052 YATSSAGAHTHSLSGTAASAGAHAHTVGIGAH----THSVAIGSHGHTI 1096


>sp|Q9RRF6|Y2536_DEIRA UPF0190 protein DR_2536 OS=Deinococcus
radiodurans GN=DR_2536 PE=3 SV=1
Length = 361

Score = 30.0 bits (66), Expect = 5.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2

Query: 203 PKWD*ASENGIGHTNRQLALMAKLYVRMPPNFTSGLPRPSTTKSYGGRPP 352
P+W A+E IG + R+ L Y SGL T+K RPP
Sbjct: 289 PRWSQATEQRIGESGRRPTLPFNGYGEQVAGLYSGLDCGGTSKWRAARPP 338


>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus
GN=Rnf10 PE=2 SV=1
Length = 802

Score = 30.0 bits (66), Expect = 5.0
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Frame = +2

Query: 77 EPRKRPTSGKSVESRPNAT--KTHG*EHLDMLYKAI*PTWP*GDPKWD*ASENGIGHTNR 250
+P + ++G + ES+P + ++G + + + P++P +EN + R
Sbjct: 35 QPPRSASAGPAGESKPKSDGKNSNGSKRYNRKRE---PSYP--------KNENFSNQSRR 83

Query: 251 QLALMAKLYVRMPPNFTSGLPRPSTTKSYGGRPPQVIDGMQTQP*ALPERQIAKRSSDEA 430
+ +K + + PP G +P ++ S GGR +V + + + + S
Sbjct: 84 SNSQKSKTFNKTPPQRGGGSSKPFSSSSNGGRRDEVAEAQRAE-------FSPAQFSGPK 136

Query: 431 KANKNHMARF 460
K N NH+ F
Sbjct: 137 KINLNHLLNF 146


>sp|A8XXB0|CCD55_CAEBR Coiled-coil domain-containing protein 55
homolog OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1
Length = 393

Score = 30.0 bits (66), Expect = 5.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3

Query: 324 QPSPMVVDHHKSSTACKRNH---RRFQSDKSPNGAPTKPKPTKT 446
+P+P V H+ ST+ +R+ +R Q +K+ + +P PK KT
Sbjct: 297 KPAPRAVGDHRRSTSPRRSRDHAQRNQREKTKSKSPEPPKAQKT 340


>sp|P77515|STFQ_ECOLI Side tail fiber protein homolog from lambdoid
prophage Qin OS=Escherichia coli (strain K12) GN=stfQ
PE=3 SV=1
Length = 320

Score = 30.0 bits (66), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1

Query: 112 GKSPKCYQNSWVGASRHALQGYIAHMAIRRPEVGLSFRKRHRTHKPSIGSHGQTV 276
G++ + S GA H+L G A VG+ TH +IGSHG T+
Sbjct: 246 GQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAH----THSVAIGSHGHTI 296


>sp|P20033|PDGFA_MOUSE Platelet-derived growth factor subunit A
OS=Mus musculus GN=Pdgfa PE=2 SV=2
Length = 211

Score = 29.6 bits (65), Expect = 6.5
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Frame = +3

Query: 84 ARGQQVVNRWKVAQMLPKLMGRSI-----STCSTRLYSPHGHKATRSGTKLQKTASDTQT 248
A G +N + +P RSI + C TR ++ ++ D +
Sbjct: 65 AHGSHAINHVPEKRPVPIRRKRSIEEAVPAVCKTRTVI----------YEIPRSQVDPTS 114

Query: 249 VNWLSWPNCMSV-----CHQTSQAACLDHQQPSPMVVDHHKSSTACKRNHRR 389
N+L WP C+ V C TS C QPS + HH+S K + R
Sbjct: 115 ANFLIWPPCVEVKRCTGCCNTSSVKC----QPSRV---HHRSVKVAKVEYVR 159


>sp|P13698|PDGFA_XENLA Platelet-derived growth factor subunit A
OS=Xenopus laevis GN=pdgfa PE=2 SV=1
Length = 226

Score = 29.3 bits (64), Expect = 8.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3

Query: 216 KLQKTASDTQTVNWLSWPNCMSV-----CHQTSQAACLDHQQPSPMVVDHHKSSTACKRN 380
++ ++ D + N+L WP C+ V C TS C QPS + HH+S K
Sbjct: 109 EIPRSQIDPTSANFLIWPPCVEVKRCTGCCNTSSVKC----QPSRI---HHRSVKVAKVE 161

Query: 381 HRR 389
+ R
Sbjct: 162 YVR 164


>sp|P28576|PDGFA_RAT Platelet-derived growth factor subunit A
OS=Rattus norvegicus GN=Pdgfa PE=2 SV=2
Length = 204

Score = 29.3 bits (64), Expect = 8.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3

Query: 216 KLQKTASDTQTVNWLSWPNCMSV-----CHQTSQAACLDHQQPSPMVVDHHKSSTACKRN 380
++ ++ D + N+L WP C+ V C TS C QPS + HH+S K
Sbjct: 104 EIPRSQVDPTSANFLIWPPCVEVKRCTGCCNTSSVKC----QPSRV---HHRSVKVAKVE 156

Query: 381 HRR 389
+ R
Sbjct: 157 YVR 159


tr_hit_id A7RSU6
Definition tr|A7RSU6|A7RSU6_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 39
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914809|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_B03.
(462 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7RSU6|A7RSU6_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 1.4
tr|B4M518|B4M518_DROVI GJ10127 OS=Drosophila virilis GN=GJ10127 ... 35 2.4
tr|A7RVV6|A7RVV6_NEMVE Predicted protein (Fragment) OS=Nematoste... 34 3.2
tr|A2FNM6|A2FNM6_TRIVA PHD-finger family protein OS=Trichomonas ... 34 3.2
tr|Q034G8|Q034G8_LACC3 Alpha-glucosidase, family 31 of glycosyl ... 33 5.4
tr|A1U411|A1U411_MARAV DNA polymerase, beta domain protein regio... 33 5.4
tr|Q2H5Y8|Q2H5Y8_CHAGB Putative uncharacterized protein OS=Chaet... 33 7.0
tr|B6IIY7|B6IIY7_CAEBR Putative uncharacterized protein OS=Caeno... 33 7.0
tr|B2Z139|B2Z139_9HIV1 Envelope glycoprotein OS=Human immunodefi... 33 9.2
tr|Q7NXA6|Q7NXA6_CHRVO Putative uncharacterized protein OS=Chrom... 33 9.2
tr|A5C9E4|A5C9E4_VITVI Putative uncharacterized protein OS=Vitis... 33 9.2
tr|B3LCH5|B3LCH5_PLAKH Putative uncharacterized protein OS=Plasm... 33 9.2

>tr|A7RSU6|A7RSU6_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g92234 PE=4 SV=1
Length = 271

Score = 35.4 bits (80), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3

Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTACKRNH 383
P+C+ +CH S A + H PS +++ HH S A +H
Sbjct: 6 PSCIIMCHHVSSCAIMYHHVPSCIIMCHHVSLCAIMYHH 44



Score = 35.0 bits (79), Expect = 1.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3

Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTA 368
P+C+ +CH S A + H PS +++ HH SS A
Sbjct: 191 PSCIIMCHHVSLCAIMYHHVPSCIIMCHHVSSCA 224



Score = 35.0 bits (79), Expect = 1.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3

Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTA 368
P+C+ +CH S A + H PS +++ HH SS A
Sbjct: 231 PSCIIMCHHVSLCALMYHNVPSCIIMCHHVSSCA 264



Score = 33.9 bits (76), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3

Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTACKRNH 383
P+C+ +CH S + H PS +++ HH S A +H
Sbjct: 121 PSCIIMCHHVSSCTIMYHHVPSCIIMYHHVSLCAIMYHH 159



Score = 33.1 bits (74), Expect = 7.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3

Query: 246 TVNWLSWPNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTACKRNH 383
T+ + P+C+ + H S A + H PS +++ HH SS A +H
Sbjct: 134 TIMYHHVPSCIIMYHHVSLCAIMYHHVPSCIIMCHHVSSCAIMYHH 179



Score = 33.1 bits (74), Expect = 7.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3

Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTA 368
P+C+ +CH S A + H PS +++ HH S A
Sbjct: 211 PSCIIMCHHVSSCAIMYHYVPSCIIMCHHVSLCA 244


>tr|B4M518|B4M518_DROVI GJ10127 OS=Drosophila virilis GN=GJ10127
PE=4 SV=1
Length = 147

Score = 34.7 bits (78), Expect = 2.4
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +3

Query: 144 GRSISTCSTRLYSPHGHKATR-SGTKLQKTASDTQTVNWLSWPNCMSVCHQTSQAACLDH 320
G S S ST + + H +K R SG QK AS + WL W +C C Q
Sbjct: 34 GNSSSRTSTTICNNHKYKTERPSGQLAQKMASTGEI--WLQWFSC---CFQ--------- 79

Query: 321 QQPSPMVVDHHKSSTACKRNHRRFQSDKSPNGAPT 425
QQ SP +R H+R + D+S G PT
Sbjct: 80 QQRSPS-----------RRPHQRLRIDRSMIGNPT 103


>tr|A7RVV6|A7RVV6_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g95049 PE=4 SV=1
Length = 78

Score = 34.3 bits (77), Expect = 3.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3

Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTACKRNHR 386
P+C H +A H +PS + HHK S A +H+
Sbjct: 21 PSCAMTSHHKPSSAITSHHKPSSAMTSHHKPSMAMTSHHK 60


>tr|A2FNM6|A2FNM6_TRIVA PHD-finger family protein OS=Trichomonas
vaginalis G3 GN=TVAG_407950 PE=4 SV=1
Length = 822

Score = 34.3 bits (77), Expect = 3.2
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +3

Query: 192 HKATRSGTKLQKTASDTQTVNWLSWPNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTAC 371
H AT LQ+ + + W +P+ + + Q+ + D P + HK TA
Sbjct: 8 HSATLLPGILQEASQAKKDTMWTEFPSAVRLDQQSQSISPTDIYLYVPSFGETHKQ-TAV 66

Query: 372 KRNHRRFQSDKSPNGAPTKPKPTK 443
+ Q +SP AP P+P+K
Sbjct: 67 RNQRSPGQRGRSPKQAPPPPQPSK 90


>tr|Q034G8|Q034G8_LACC3 Alpha-glucosidase, family 31 of glycosyl
hydrolase OS=Lactobacillus casei (strain ATCC 334)
GN=LSEI_2686 PE=4 SV=1
Length = 651

Score = 33.5 bits (75), Expect = 5.4
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3

Query: 237 DTQTVNWLSWPNCMSVCHQTSQAACLDHQQPSPMVVDHHKSS--TACKRNHRRFQSDKSP 410
D +T SW + + LD +P+ ++VDH + TA K +R Q+D S
Sbjct: 537 DAKTYTDASWRDLQAAIDAAKDVLTLD--EPTQVMVDHATKAVLTAQKALVKRSQTDPSS 594

Query: 411 NGAPTKPKP 437
PTKP P
Sbjct: 595 KTPPTKPLP 603


>tr|A1U411|A1U411_MARAV DNA polymerase, beta domain protein region
OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8) GN=Maqu_2655 PE=4 SV=1
Length = 108

Score = 33.5 bits (75), Expect = 5.4
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +2

Query: 308 LPRPSTTKSYGGRPPQVIDGMQT 376
LP PST K G PPQVI G+QT
Sbjct: 3 LPEPSTVKEAFGLPPQVIKGLQT 25


>tr|Q2H5Y8|Q2H5Y8_CHAGB Putative uncharacterized protein
OS=Chaetomium globosum GN=CHGG_05927 PE=4 SV=1
Length = 147

Score = 33.1 bits (74), Expect = 7.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1

Query: 46 KKPTGKNLTSRAPQEANKW*IGGKSPKCYQNSWVGASRHALQGY 177
KKP G+ TSRAPQ K + +P ++S SR + Y
Sbjct: 83 KKPPGRGATSRAPQPTTKAAVSPSAPATARSSTFSISRESFDSY 126


>tr|B6IIY7|B6IIY7_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG26232 PE=4 SV=1
Length = 1370

Score = 33.1 bits (74), Expect = 7.0
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Frame = +3

Query: 123 QMLPKLMGRSISTCSTRLYSPHGHKATRSGTKLQKTASDTQTVNWLSWPNCMSVCHQTSQ 302
Q LP++ +S+ T L P + LQ+ + + + N QTSQ
Sbjct: 584 QSLPQIAQQSVQTIPEDLTIPD-----LAQNALQRIPQVPEGIPYKVISNSAQTAQQTSQ 638

Query: 303 AACLDHQQPSPMVVDHHKSSTACKRNHRR-----------FQSDKSPNGAPTKPK 434
L QQPS V + +S+ + R ++ PN AP KPK
Sbjct: 639 MTTLLDQQPSRTVPEDSTTSSLAQNAQERVPEVSEAVPILIATNSDPNQAPKKPK 693


>tr|B2Z139|B2Z139_9HIV1 Envelope glycoprotein OS=Human
immunodeficiency virus 1 GN=env PE=4 SV=1
Length = 859

Score = 32.7 bits (73), Expect = 9.2
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +3

Query: 45 QKTNGKKSNF*SPARGQQVVNRWK---VAQMLPKLMG--RSISTCSTRLYSPHGHKATRS 209
+ T G +N P R +Q++NRW+ A P + G R +S + L + G + +
Sbjct: 406 KNTEGADNNITLPCRIKQIINRWQEVGKAMYAPPIEGQIRCLSNITGLLLTRDGGSSEEN 465

Query: 210 GTKLQKTASDTQTVNWLS 263
TK+ + NW S
Sbjct: 466 QTKIFRPGGGNMKDNWRS 483


>tr|Q7NXA6|Q7NXA6_CHRVO Putative uncharacterized protein
OS=Chromobacterium violaceum GN=CV_1721 PE=4 SV=1
Length = 65

Score = 32.7 bits (73), Expect = 9.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3

Query: 382 WLRLHAVDDLWWSTTIGLGC*WSRQAACEVW 290
WL L VDD+ + T G GC W R W
Sbjct: 8 WLNLFHVDDMVYRTPAGAGCRWRRMGGPSFW 38