BP914809 |
Clone id |
YMU001_000063_B03 |
Library |
YMU01 |
Length |
462 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000063_B03. |
Accession |
BP914809 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GTGTAACCTAGCATAGGAGACCACTCTTGAATGCACAAAGGCAGCAAAAAACCAACGGGA AAAAATCTAACTTCTAGAGCCCCGCAAGAGGCCAACAAGTGGTAAATCGGTGGAAAGTCG CCCAAATGCTACCAAAACTCATGGGTAGGAGCATCTCGACATGCTCTACAAGGCTATATA GCCCACATGGCCATAAGGCGACCCGAAGTGGGACTAAGCTTCAGAAAACGGCATCGGACA CACAAACCGTCAATTGGCTCTCATGGCCAAACTGTATGTCCGTATGCCACCAAACTTCAC AAGCGGCTTGCCTAGACCATCAACAACCAAGTCCTATGGTGGTAGACCACCACAAGTCAT CGACGGCATGCAAACGCAACCATAGGCGCTTCCAGAGCGACAAATCGCCAAACGGAGCTC CGACGAAGCCAAAGCCAACAAAAACCATATGGCAAGGTTCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3UIW5 |
Definition |
sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus |
Align length |
130 |
Score (bit) |
32.3 |
E-value |
1.0 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914809|Adiantum capillus-veneris mRNA, clone: YMU001_000063_B03. (462 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=... 32 1.0 sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila ... 32 1.3 sp|P76072|STFR_ECOLI Side tail fiber protein homolog from lambdo... 32 1.3 sp|Q9RRF6|Y2536_DEIRA UPF0190 protein DR_2536 OS=Deinococcus rad... 30 5.0 sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus ... 30 5.0 sp|A8XXB0|CCD55_CAEBR Coiled-coil domain-containing protein 55 h... 30 5.0 sp|P77515|STFQ_ECOLI Side tail fiber protein homolog from lambdo... 30 5.1 sp|P20033|PDGFA_MOUSE Platelet-derived growth factor subunit A O... 30 6.5 sp|P13698|PDGFA_XENLA Platelet-derived growth factor subunit A O... 29 8.5 sp|P28576|PDGFA_RAT Platelet-derived growth factor subunit A OS=... 29 8.5 sp|P34007|PDGFA_RABIT Platelet-derived growth factor subunit A O... 29 8.5 sp|P04085|PDGFA_HUMAN Platelet-derived growth factor subunit A O... 29 8.5
>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2 Length = 804
Score = 32.3 bits (72), Expect = 1.0 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Frame = +2
Query: 77 EPRKRPTSGKSVESRPNAT--KTHG*EHLDMLYKAI*PTWP*GDPKWD*ASENGIGHTNR 250 +P + ++G + ES+P + ++G + + + P++P +EN + R Sbjct: 35 QPPRSASAGPAGESKPKSDGKNSNGSKRYNRKRE---PSYP--------KNENFSNQSRR 83
Query: 251 QLALMAKLYVRMPPNFTSGLPRPSTTKSYGGRPPQVIDGMQTQP*ALPERQIAKRSSDEA 430 + +K + +MPP G +P ++ S GGR +V + + + + S Sbjct: 84 SNSQKSKTFNKMPPQRGGGSSKPFSSSSNGGRRDEVAEAQRAE-------FSPAQFSGPK 136
Query: 431 KANKNHMARF 460 K N NH+ F Sbjct: 137 KINLNHLLNF 146
>sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila pseudoobscura pseudoobscura GN=rno PE=3 SV=2 Length = 3313
Score = 32.0 bits (71), Expect = 1.3 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 13/65 (20%) Frame = +2
Query: 287 PPNFTSGLPRPSTTKSYGGRPPQVIDGMQTQP*A-------------LPERQIAKRSSDE 427 PP P PST+ + +PP + T P A +P+RQ AK+++++ Sbjct: 1225 PPKVPREPPAPSTSSTEKEKPPPPAEAKSTAPAAKPTAAKTSFAVSYVPQRQAAKKAAEQ 1284
Query: 428 AKANK 442 K++K Sbjct: 1285 LKSSK 1289
>sp|P76072|STFR_ECOLI Side tail fiber protein homolog from lambdoid prophage Rac OS=Escherichia coli (strain K12) GN=stfR PE=3 SV=2 Length = 1120
Score = 32.0 bits (71), Expect = 1.3 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = +1
Query: 130 YQNSWVGASRHALQGYIAHMAIRRPEVGLSFRKRHRTHKPSIGSHGQTV 276 Y S GA H+L G A VG+ TH +IGSHG T+ Sbjct: 1052 YATSSAGAHTHSLSGTAASAGAHAHTVGIGAH----THSVAIGSHGHTI 1096
>sp|Q9RRF6|Y2536_DEIRA UPF0190 protein DR_2536 OS=Deinococcus radiodurans GN=DR_2536 PE=3 SV=1 Length = 361
Score = 30.0 bits (66), Expect = 5.0 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +2
Query: 203 PKWD*ASENGIGHTNRQLALMAKLYVRMPPNFTSGLPRPSTTKSYGGRPP 352 P+W A+E IG + R+ L Y SGL T+K RPP Sbjct: 289 PRWSQATEQRIGESGRRPTLPFNGYGEQVAGLYSGLDCGGTSKWRAARPP 338
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1 Length = 802
Score = 30.0 bits (66), Expect = 5.0 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Frame = +2
Query: 77 EPRKRPTSGKSVESRPNAT--KTHG*EHLDMLYKAI*PTWP*GDPKWD*ASENGIGHTNR 250 +P + ++G + ES+P + ++G + + + P++P +EN + R Sbjct: 35 QPPRSASAGPAGESKPKSDGKNSNGSKRYNRKRE---PSYP--------KNENFSNQSRR 83
Query: 251 QLALMAKLYVRMPPNFTSGLPRPSTTKSYGGRPPQVIDGMQTQP*ALPERQIAKRSSDEA 430 + +K + + PP G +P ++ S GGR +V + + + + S Sbjct: 84 SNSQKSKTFNKTPPQRGGGSSKPFSSSSNGGRRDEVAEAQRAE-------FSPAQFSGPK 136
Query: 431 KANKNHMARF 460 K N NH+ F Sbjct: 137 KINLNHLLNF 146
>sp|A8XXB0|CCD55_CAEBR Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1 Length = 393
Score = 30.0 bits (66), Expect = 5.0 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = +3
Query: 324 QPSPMVVDHHKSSTACKRNH---RRFQSDKSPNGAPTKPKPTKT 446 +P+P V H+ ST+ +R+ +R Q +K+ + +P PK KT Sbjct: 297 KPAPRAVGDHRRSTSPRRSRDHAQRNQREKTKSKSPEPPKAQKT 340
>sp|P77515|STFQ_ECOLI Side tail fiber protein homolog from lambdoid prophage Qin OS=Escherichia coli (strain K12) GN=stfQ PE=3 SV=1 Length = 320
Score = 30.0 bits (66), Expect = 5.1 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = +1
Query: 112 GKSPKCYQNSWVGASRHALQGYIAHMAIRRPEVGLSFRKRHRTHKPSIGSHGQTV 276 G++ + S GA H+L G A VG+ TH +IGSHG T+ Sbjct: 246 GQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAH----THSVAIGSHGHTI 296
>sp|P20033|PDGFA_MOUSE Platelet-derived growth factor subunit A OS=Mus musculus GN=Pdgfa PE=2 SV=2 Length = 211
Score = 29.6 bits (65), Expect = 6.5 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Frame = +3
Query: 84 ARGQQVVNRWKVAQMLPKLMGRSI-----STCSTRLYSPHGHKATRSGTKLQKTASDTQT 248 A G +N + +P RSI + C TR ++ ++ D + Sbjct: 65 AHGSHAINHVPEKRPVPIRRKRSIEEAVPAVCKTRTVI----------YEIPRSQVDPTS 114
Query: 249 VNWLSWPNCMSV-----CHQTSQAACLDHQQPSPMVVDHHKSSTACKRNHRR 389 N+L WP C+ V C TS C QPS + HH+S K + R Sbjct: 115 ANFLIWPPCVEVKRCTGCCNTSSVKC----QPSRV---HHRSVKVAKVEYVR 159
>sp|P13698|PDGFA_XENLA Platelet-derived growth factor subunit A OS=Xenopus laevis GN=pdgfa PE=2 SV=1 Length = 226
Score = 29.3 bits (64), Expect = 8.5 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +3
Query: 216 KLQKTASDTQTVNWLSWPNCMSV-----CHQTSQAACLDHQQPSPMVVDHHKSSTACKRN 380 ++ ++ D + N+L WP C+ V C TS C QPS + HH+S K Sbjct: 109 EIPRSQIDPTSANFLIWPPCVEVKRCTGCCNTSSVKC----QPSRI---HHRSVKVAKVE 161
Query: 381 HRR 389 + R Sbjct: 162 YVR 164
>sp|P28576|PDGFA_RAT Platelet-derived growth factor subunit A OS=Rattus norvegicus GN=Pdgfa PE=2 SV=2 Length = 204
Score = 29.3 bits (64), Expect = 8.5 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +3
Query: 216 KLQKTASDTQTVNWLSWPNCMSV-----CHQTSQAACLDHQQPSPMVVDHHKSSTACKRN 380 ++ ++ D + N+L WP C+ V C TS C QPS + HH+S K Sbjct: 104 EIPRSQVDPTSANFLIWPPCVEVKRCTGCCNTSSVKC----QPSRV---HHRSVKVAKVE 156
Query: 381 HRR 389 + R Sbjct: 157 YVR 159
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7RSU6 |
Definition |
tr|A7RSU6|A7RSU6_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis |
Align length |
39 |
Score (bit) |
35.4 |
E-value |
1.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914809|Adiantum capillus-veneris mRNA, clone: YMU001_000063_B03. (462 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7RSU6|A7RSU6_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 1.4 tr|B4M518|B4M518_DROVI GJ10127 OS=Drosophila virilis GN=GJ10127 ... 35 2.4 tr|A7RVV6|A7RVV6_NEMVE Predicted protein (Fragment) OS=Nematoste... 34 3.2 tr|A2FNM6|A2FNM6_TRIVA PHD-finger family protein OS=Trichomonas ... 34 3.2 tr|Q034G8|Q034G8_LACC3 Alpha-glucosidase, family 31 of glycosyl ... 33 5.4 tr|A1U411|A1U411_MARAV DNA polymerase, beta domain protein regio... 33 5.4 tr|Q2H5Y8|Q2H5Y8_CHAGB Putative uncharacterized protein OS=Chaet... 33 7.0 tr|B6IIY7|B6IIY7_CAEBR Putative uncharacterized protein OS=Caeno... 33 7.0 tr|B2Z139|B2Z139_9HIV1 Envelope glycoprotein OS=Human immunodefi... 33 9.2 tr|Q7NXA6|Q7NXA6_CHRVO Putative uncharacterized protein OS=Chrom... 33 9.2 tr|A5C9E4|A5C9E4_VITVI Putative uncharacterized protein OS=Vitis... 33 9.2 tr|B3LCH5|B3LCH5_PLAKH Putative uncharacterized protein OS=Plasm... 33 9.2
>tr|A7RSU6|A7RSU6_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g92234 PE=4 SV=1 Length = 271
Score = 35.4 bits (80), Expect = 1.4 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +3
Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTACKRNH 383 P+C+ +CH S A + H PS +++ HH S A +H Sbjct: 6 PSCIIMCHHVSSCAIMYHHVPSCIIMCHHVSLCAIMYHH 44
Score = 35.0 bits (79), Expect = 1.9 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3
Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTA 368 P+C+ +CH S A + H PS +++ HH SS A Sbjct: 191 PSCIIMCHHVSLCAIMYHHVPSCIIMCHHVSSCA 224
Score = 35.0 bits (79), Expect = 1.9 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3
Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTA 368 P+C+ +CH S A + H PS +++ HH SS A Sbjct: 231 PSCIIMCHHVSLCALMYHNVPSCIIMCHHVSSCA 264
Score = 33.9 bits (76), Expect = 4.1 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3
Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTACKRNH 383 P+C+ +CH S + H PS +++ HH S A +H Sbjct: 121 PSCIIMCHHVSSCTIMYHHVPSCIIMYHHVSLCAIMYHH 159
Score = 33.1 bits (74), Expect = 7.0 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +3
Query: 246 TVNWLSWPNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTACKRNH 383 T+ + P+C+ + H S A + H PS +++ HH SS A +H Sbjct: 134 TIMYHHVPSCIIMYHHVSLCAIMYHHVPSCIIMCHHVSSCAIMYHH 179
Score = 33.1 bits (74), Expect = 7.0 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3
Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTA 368 P+C+ +CH S A + H PS +++ HH S A Sbjct: 211 PSCIIMCHHVSSCAIMYHYVPSCIIMCHHVSLCA 244
>tr|B4M518|B4M518_DROVI GJ10127 OS=Drosophila virilis GN=GJ10127 PE=4 SV=1 Length = 147
Score = 34.7 bits (78), Expect = 2.4 Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Frame = +3
Query: 144 GRSISTCSTRLYSPHGHKATR-SGTKLQKTASDTQTVNWLSWPNCMSVCHQTSQAACLDH 320 G S S ST + + H +K R SG QK AS + WL W +C C Q Sbjct: 34 GNSSSRTSTTICNNHKYKTERPSGQLAQKMASTGEI--WLQWFSC---CFQ--------- 79
Query: 321 QQPSPMVVDHHKSSTACKRNHRRFQSDKSPNGAPT 425 QQ SP +R H+R + D+S G PT Sbjct: 80 QQRSPS-----------RRPHQRLRIDRSMIGNPT 103
>tr|A7RVV6|A7RVV6_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g95049 PE=4 SV=1 Length = 78
Score = 34.3 bits (77), Expect = 3.2 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3
Query: 267 PNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTACKRNHR 386 P+C H +A H +PS + HHK S A +H+ Sbjct: 21 PSCAMTSHHKPSSAITSHHKPSSAMTSHHKPSMAMTSHHK 60
>tr|A2FNM6|A2FNM6_TRIVA PHD-finger family protein OS=Trichomonas vaginalis G3 GN=TVAG_407950 PE=4 SV=1 Length = 822
Score = 34.3 bits (77), Expect = 3.2 Identities = 22/84 (26%), Positives = 36/84 (42%) Frame = +3
Query: 192 HKATRSGTKLQKTASDTQTVNWLSWPNCMSVCHQTSQAACLDHQQPSPMVVDHHKSSTAC 371 H AT LQ+ + + W +P+ + + Q+ + D P + HK TA Sbjct: 8 HSATLLPGILQEASQAKKDTMWTEFPSAVRLDQQSQSISPTDIYLYVPSFGETHKQ-TAV 66
Query: 372 KRNHRRFQSDKSPNGAPTKPKPTK 443 + Q +SP AP P+P+K Sbjct: 67 RNQRSPGQRGRSPKQAPPPPQPSK 90
>tr|Q034G8|Q034G8_LACC3 Alpha-glucosidase, family 31 of glycosyl hydrolase OS=Lactobacillus casei (strain ATCC 334) GN=LSEI_2686 PE=4 SV=1 Length = 651
Score = 33.5 bits (75), Expect = 5.4 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = +3
Query: 237 DTQTVNWLSWPNCMSVCHQTSQAACLDHQQPSPMVVDHHKSS--TACKRNHRRFQSDKSP 410 D +T SW + + LD +P+ ++VDH + TA K +R Q+D S Sbjct: 537 DAKTYTDASWRDLQAAIDAAKDVLTLD--EPTQVMVDHATKAVLTAQKALVKRSQTDPSS 594
Query: 411 NGAPTKPKP 437 PTKP P Sbjct: 595 KTPPTKPLP 603
>tr|A1U411|A1U411_MARAV DNA polymerase, beta domain protein region OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=Maqu_2655 PE=4 SV=1 Length = 108
Score = 33.5 bits (75), Expect = 5.4 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +2
Query: 308 LPRPSTTKSYGGRPPQVIDGMQT 376 LP PST K G PPQVI G+QT Sbjct: 3 LPEPSTVKEAFGLPPQVIKGLQT 25
>tr|Q2H5Y8|Q2H5Y8_CHAGB Putative uncharacterized protein OS=Chaetomium globosum GN=CHGG_05927 PE=4 SV=1 Length = 147
Score = 33.1 bits (74), Expect = 7.0 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +1
Query: 46 KKPTGKNLTSRAPQEANKW*IGGKSPKCYQNSWVGASRHALQGY 177 KKP G+ TSRAPQ K + +P ++S SR + Y Sbjct: 83 KKPPGRGATSRAPQPTTKAAVSPSAPATARSSTFSISRESFDSY 126
>tr|B6IIY7|B6IIY7_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae GN=CBG26232 PE=4 SV=1 Length = 1370
Score = 33.1 bits (74), Expect = 7.0 Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 11/115 (9%) Frame = +3
Query: 123 QMLPKLMGRSISTCSTRLYSPHGHKATRSGTKLQKTASDTQTVNWLSWPNCMSVCHQTSQ 302 Q LP++ +S+ T L P + LQ+ + + + N QTSQ Sbjct: 584 QSLPQIAQQSVQTIPEDLTIPD-----LAQNALQRIPQVPEGIPYKVISNSAQTAQQTSQ 638
Query: 303 AACLDHQQPSPMVVDHHKSSTACKRNHRR-----------FQSDKSPNGAPTKPK 434 L QQPS V + +S+ + R ++ PN AP KPK Sbjct: 639 MTTLLDQQPSRTVPEDSTTSSLAQNAQERVPEVSEAVPILIATNSDPNQAPKKPK 693
>tr|B2Z139|B2Z139_9HIV1 Envelope glycoprotein OS=Human immunodeficiency virus 1 GN=env PE=4 SV=1 Length = 859
Score = 32.7 bits (73), Expect = 9.2 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Frame = +3
Query: 45 QKTNGKKSNF*SPARGQQVVNRWK---VAQMLPKLMG--RSISTCSTRLYSPHGHKATRS 209 + T G +N P R +Q++NRW+ A P + G R +S + L + G + + Sbjct: 406 KNTEGADNNITLPCRIKQIINRWQEVGKAMYAPPIEGQIRCLSNITGLLLTRDGGSSEEN 465
Query: 210 GTKLQKTASDTQTVNWLS 263 TK+ + NW S Sbjct: 466 QTKIFRPGGGNMKDNWRS 483
>tr|Q7NXA6|Q7NXA6_CHRVO Putative uncharacterized protein OS=Chromobacterium violaceum GN=CV_1721 PE=4 SV=1 Length = 65
Score = 32.7 bits (73), Expect = 9.2 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -3
Query: 382 WLRLHAVDDLWWSTTIGLGC*WSRQAACEVW 290 WL L VDD+ + T G GC W R W Sbjct: 8 WLNLFHVDDMVYRTPAGAGCRWRRMGGPSFW 38
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