BP914815 |
Clone id |
YMU001_000063_B09 |
Library |
YMU01 |
Length |
521 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000063_B09. |
Accession |
BP914815 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TGATCATCCATTGCACAGGTCTTTTGCCAAAGAATAAATGACTATACGGCATCCACAGCA ACCTCACAGGGATTGTTGCATTGGAATTCAAATGTCAATCTTACAACCAAGTATAATATG TCCAGGAAGCTAGATCCTCAAGAGTTCGCCCCACCATCTCTCAAACAGGTGCATCTTATT TGAAAATTTGAATTGGGGCATTCCGAGAACATCCAAAGCTCAGACTGACCTCTTCTTTGC ACCGCAACCATGAGAAAACTTGCCTTATTCTCCAAAAACTACAAGACGTTCCGTACAAAA CTGTGGGAGCTTAGGAAAGCAGTTACCTTTCTTATACAGAGAGCTTCTCGGTTAGATGTT TTGCAACAGCATCAAGAAATTCCTCAGTGTTCAAGTAATGATTCCTGGAAAGCTTTGGGC CATGAATCAATAAAGCTAGGTCCTTGGTCATTTTTCCAGCTTCCACCGTCTCAATACATG CAGCTTCCAATTTTTCACAGAACTCCTGCAGCTCCTTGTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q06197 |
Definition |
sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max |
Align length |
59 |
Score (bit) |
89.0 |
E-value |
1.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914815|Adiantum capillus-veneris mRNA, clone: YMU001_000063_B09. (521 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine ... 89 1e-17 sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplas... 87 5e-17 sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotian... 87 5e-17 sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum ... 82 2e-15 sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic... 63 1e-09 sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic... 63 1e-09 sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondr... 62 1e-09 sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic... 61 3e-09 sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic... 61 3e-09 sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic O... 61 4e-09 sp|O88844|IDHC_MOUSE Isocitrate dehydrogenase [NADP] cytoplasmic... 61 4e-09 sp|Q75JR3|IDHC_DICDI Isocitrate dehydrogenase [NADP] cytoplasmic... 61 4e-09 sp|P65097|IDH_MYCTU Isocitrate dehydrogenase [NADP] OS=Mycobacte... 59 2e-08 sp|P65098|IDH_MYCBO Isocitrate dehydrogenase [NADP] OS=Mycobacte... 59 2e-08 sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic... 58 2e-08 sp|Q5R9C5|IDHC_PONAB Isocitrate dehydrogenase [NADP] cytoplasmic... 58 3e-08 sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondria... 56 9e-08 sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondr... 56 9e-08 sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondr... 56 1e-07 sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondr... 56 1e-07 sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondria... 55 3e-07 sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondr... 55 3e-07 sp|P50215|IDH_SPHYA Isocitrate dehydrogenase [NADP] OS=Sphingomo... 49 2e-05 sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], m... 49 2e-05 sp|P53982|IDHH_YEAST Isocitrate dehydrogenase [NADP] OS=Saccharo... 48 3e-05 sp|O13294|IDH2_CANTR Isocitrate dehydrogenase [NADP] peroxisomal... 47 5e-05 sp|O13285|IDH1_CANTR Isocitrate dehydrogenase [NADP], mitochondr... 46 9e-05 sp|P41939|IDHC_YEAST Isocitrate dehydrogenase [NADP] cytoplasmic... 44 6e-04 sp|P21954|IDHP_YEAST Isocitrate dehydrogenase [NADP], mitochondr... 42 0.001 sp|Q3UHA3|SPTCS_MOUSE Spatacsin OS=Mus musculus GN=Spg11 PE=2 SV=2 32 2.4
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Length = 413
Score = 89.0 bits (219), Expect = 1e-17 Identities = 43/59 (72%), Positives = 50/59 (84%) Frame = -2
Query: 514 ELQEFCEKLEAACIETVEAGKMTKDLALLIHGPKLSRNHYLNTEEFLDAVAKHLTEKLS 338 +L +F EKLEAACI VEAGKMTKDLAL++HG KLSR HYLNTEEF+DAVA L+ +LS Sbjct: 354 KLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Length = 433
Score = 87.0 bits (214), Expect = 5e-17 Identities = 42/58 (72%), Positives = 48/58 (82%) Frame = -2
Query: 511 LQEFCEKLEAACIETVEAGKMTKDLALLIHGPKLSRNHYLNTEEFLDAVAKHLTEKLS 338 L +F EKLEAACI VE+GKMTKDLAL++HG KLSR HYLNTEEF+DAVA L K+S Sbjct: 375 LLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Length = 415
Score = 87.0 bits (214), Expect = 5e-17 Identities = 42/60 (70%), Positives = 50/60 (83%) Frame = -2
Query: 520 HKELQEFCEKLEAACIETVEAGKMTKDLALLIHGPKLSRNHYLNTEEFLDAVAKHLTEKL 341 ++ L +F EKLEAACI VE+GKMTKDLAL+IHG KLSR+HYLNTEEF+DAVA L +L Sbjct: 351 NERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Length = 416
Score = 82.0 bits (201), Expect = 2e-15 Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 1/61 (1%) Frame = -2
Query: 520 HKELQEFCEKLEAACIETVEAGKMTKDLALLI-HGPKLSRNHYLNTEEFLDAVAKHLTEK 344 ++ L +F EKLEAACI VE+GKMTKDLAL+I HG KLSR HYLNTEEF+DAVA L + Sbjct: 351 NERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKAR 410
Query: 343 L 341 L Sbjct: 411 L 411
>sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1 Length = 414
Score = 62.8 bits (151), Expect = 1e-09 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Frame = -2
Query: 520 HKELQEFCEKLEAACIETVEAGKMTKDLALLIHG-PKLSRNHYLNTEEFLDAVAKHLTEK 344 +KEL F + LE CIET+EAG MTKDLA I G P + R+ YLNT EF+D + ++L K Sbjct: 349 NKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLK 408
Query: 343 LS 338 L+ Sbjct: 409 LA 410
>sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1 Length = 414
Score = 62.8 bits (151), Expect = 1e-09 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Frame = -2
Query: 520 HKELQEFCEKLEAACIETVEAGKMTKDLALLIHG-PKLSRNHYLNTEEFLDAVAKHLTEK 344 +KEL F + LE CIET+EAG MTKDLA I G P + R+ YLNT EF+D + ++L K Sbjct: 349 NKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLK 408
Query: 343 LS 338 L+ Sbjct: 409 LA 410
>sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1 Length = 428
Score = 62.4 bits (150), Expect = 1e-09 Identities = 26/54 (48%), Positives = 44/54 (81%) Frame = -2
Query: 520 HKELQEFCEKLEAACIETVEAGKMTKDLALLIHGPKLSRNHYLNTEEFLDAVAK 359 +K+L +F + +E AC+E++E+G MTKDLA+ I G ++ R++YLNTEE+++ VA+ Sbjct: 369 NKDLVKFAQDMEKACVESIESGFMTKDLAICIKGNQVKRSNYLNTEEYINKVAE 422
>sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1 Length = 414
Score = 61.2 bits (147), Expect = 3e-09 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Frame = -2
Query: 514 ELQEFCEKLEAACIETVEAGKMTKDLALLIHG-PKLSRNHYLNTEEFLDAVAKHLTEKLS 338 EL F + LE CIET+EAG MTKDLA I G P + R+ YLNT EF+D + ++L KL+ Sbjct: 351 ELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410
>sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1 Length = 414
Score = 61.2 bits (147), Expect = 3e-09 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Frame = -2
Query: 514 ELQEFCEKLEAACIETVEAGKMTKDLALLIHG-PKLSRNHYLNTEEFLDAVAKHLTEKLS 338 EL F + LE CIET+EAG MTKDLA I G P + R+ YLNT EF+D + ++L KL+ Sbjct: 351 ELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410
>sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1 Length = 414
Score = 60.8 bits (146), Expect = 4e-09 Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Frame = -2
Query: 514 ELQEFCEKLEAACIETVEAGKMTKDLALLIHG-PKLSRNHYLNTEEFLDAVAKHLTEKLS 338 EL F LE CIET+EAG MTKDLA I G P + R+ YLNT EF+D + ++L KL+ Sbjct: 351 ELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q7Y0W7 |
Definition |
tr|Q7Y0W7|Q7Y0W7_LUPAL NADP-specific isocitrate dehydrogenase OS=Lupinus albus |
Align length |
60 |
Score (bit) |
92.0 |
E-value |
2.0e-17 |
Report |
|