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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914817
Clone id YMU001_000063_B11
Library
Length 367
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGAGCCATTTTACAATCTGTACATGCCATCCAAAACGCATTGTAGGTATCAAGATGGGA
AACATTACTGCAACCGCCATGGTCAAAACCCTACTTCACTCTCAACATTCCCCTTCCAAG
CTTATACTGGTGGTCTCCATCACCAGCTCCATCTGTTTATACGTTACATTATTGACTGGA
AGCTCATCAAAACTTTTAACACACTTGGCTTTACAAAATGTGTGCATAGAGTGCACTAAG
AATACAGCATTTGGGCTATAACAATTTGCGACAGCCATCTGTATTCAGCAGATTGTGGCG
AGTTCAAACGATTAGCAGTCGCCGACGTACTTAAGCTGTTCCTGTTATGAGTTTCTCCTG
CTTATCT
■■Homology search results ■■ -
sp_hit_id Q0VF94
Definition sp|Q0VF94|NKPD1_MOUSE NTPase KAP family P-loop domain-containing protein 1 OS=Mus musculus
Align length 38
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914817|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_B11.
         (367 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0VF94|NKPD1_MOUSE NTPase KAP family P-loop domain-containing...    30   4.9  
sp|Q17RQ9|NKPD1_HUMAN NTPase KAP family P-loop domain-containing...    30   4.9  
sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase subunit beta' O...    29   6.4  
sp|Q2PT36|AICDA_BOVIN Activation-induced cytidine deaminase OS=B...    29   8.4  

>sp|Q0VF94|NKPD1_MOUSE NTPase KAP family P-loop domain-containing
           protein 1 OS=Mus musculus GN=Nkpd1 PE=2 SV=2
          Length = 599

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 22  TCHPKRIVGIKMGNITATAMVKTLLHSQHSPSKLILVV 135
           TC+P+R+VG+          + TLL   H+P   ILVV
Sbjct: 240 TCYPERVVGV-------LNAINTLLSDSHAPFIFILVV 270


>sp|Q17RQ9|NKPD1_HUMAN NTPase KAP family P-loop domain-containing
           protein 1 OS=Homo sapiens GN=NKPD1 PE=2 SV=1
          Length = 610

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 22  TCHPKRIVGIKMGNITATAMVKTLLHSQHSPSKLILVV 135
           TC+P+R+VG+          + TLL   H+P   ILVV
Sbjct: 241 TCYPERVVGV-------LNAINTLLSDSHAPFIFILVV 271


>sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase subunit beta'
           OS=Fusobacterium nucleatum subsp. nucleatum GN=rpoC PE=3
           SV=1
          Length = 1319

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +1

Query: 52  KMGNITATAMVKTLLHSQHSPSKLILVVSITS 147
           +MG+IT  + V  + +S+ SP+K+ L++ I+S
Sbjct: 90  RMGHITLASPVSHIWYSKGSPNKMSLIIGISS 121


>sp|Q2PT36|AICDA_BOVIN Activation-induced cytidine deaminase OS=Bos
           taurus GN=AICDA PE=2 SV=1
          Length = 199

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +3

Query: 45  RYQDGKH-----YCNRHGQNPTSLST-FPFQAYTGGLHHQLHLFIRYIIDWKL 185
           R+  G+H     Y  +   +PTS S  F       G H +L LF+RYI DW L
Sbjct: 19  RWAKGRHETYLCYVVKRRDSPTSFSLDFGHLRNKAGCHVEL-LFLRYISDWDL 70
tr_hit_id A5BF55
Definition tr|A5BF55|A5BF55_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 41
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914817|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_B11.
         (367 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BF55|A5BF55_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|A7QXQ6|A7QXQ6_VITVI Chromosome undetermined scaffold_229, who...    34   3.2  
tr|Q6K3C7|Q6K3C7_ORYSJ Os02g0282000 protein OS=Oryza sativa subs...    33   5.5  
tr|B8AFM2|B8AFM2_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|A0C575|A0C575_PARTE Chromosome undetermined scaffold_15, whol...    33   9.3  
tr|B8BUT2|B8BUT2_THAPS Predicted protein OS=Thalassiosira pseudo...    33   9.3  

>tr|A5BF55|A5BF55_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044320 PE=4 SV=1
          Length = 933

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 36  THCRYQDGKHYCNRHGQNPTSLSTFPFQAYTGGLHHQLHLF 158
           TH  Y+  K  C+ HG NP +  +F  +A++G +   LHLF
Sbjct: 799 THVEYEIAKAICDHHGPNPGNQRSFLSEAFSGPV-SSLHLF 838


>tr|A7QXQ6|A7QXQ6_VITVI Chromosome undetermined scaffold_229, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00009317001 PE=4 SV=1
          Length = 395

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 36  THCRYQDGKHYCNRHGQNPTSLSTFPFQAYTGGLHHQLHLF 158
           TH  Y+  K  C+ HG NP +  +F  + ++ GL   LHLF
Sbjct: 175 THVEYETAKAICDHHGPNPGNQRSFLSEIFS-GLVSSLHLF 214


>tr|Q6K3C7|Q6K3C7_ORYSJ Os02g0282000 protein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0063E14.20 PE=4 SV=1
          Length = 1185

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 180  KLIKTFNTLGFTKCVHRVH*EYSIWAITICDSHLYSADCGEFKRLAVAD 326
            KLI ++N LG  +C       +S+W +T    H++S+     ++L +AD
Sbjct: 936  KLINSWNLLGDIECCSLTSLVFSLWHVTSIPLHVWSSSFPALQKLQIAD 984


>tr|B8AFM2|B8AFM2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_06761 PE=4 SV=1
          Length = 1159

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 180  KLIKTFNTLGFTKCVHRVH*EYSIWAITICDSHLYSADCGEFKRLAVAD 326
            KLI ++N LG  +C       +S+W +T    H++S+     ++L +AD
Sbjct: 910  KLINSWNLLGDIECCSLTSLVFSLWHVTSIPLHVWSSSFPALQKLQIAD 958


>tr|A0C575|A0C575_PARTE Chromosome undetermined scaffold_15, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00006441001 PE=4 SV=1
          Length = 478

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 304 NSPQSAEYRWLSQIVIAQMLYS*CTLCTHFVKPSVLKVLMSFQSI 170
           N   S EYR  + +++AQM+YS   LC+  +K  +L++L+    I
Sbjct: 110 NENISLEYRSDTLLLLAQMMYSNYELCSELLKQGILQLLIDLVKI 154


>tr|B8BUT2|B8BUT2_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_21346 PE=4 SV=1
          Length = 502

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 114 FQAYTGGLHHQLHLFIRYIIDWKLIKTFNTLGF 212
           F  YTG L HQ+ L I Y+   +  KTF  LG+
Sbjct: 166 FDTYTGKLDHQIQLLIAYLERCRASKTFIRLGY 198