BP914817
Clone id YMU001_000063_B11
Library
Length 367
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTGAGCCATTTTACAATCTGTACATGCCATCCAAAACGCATTGTAGGTATCAAGATGGGA
AACATTACTGCAACCGCCATGGTCAAAACCCTACTTCACTCTCAACATTCCCCTTCCAAG
CTTATACTGGTGGTCTCCATCACCAGCTCCATCTGTTTATACGTTACATTATTGACTGGA
AGCTCATCAAAACTTTTAACACACTTGGCTTTACAAAATGTGTGCATAGAGTGCACTAAG
AATACAGCATTTGGGCTATAACAATTTGCGACAGCCATCTGTATTCAGCAGATTGTGGCG
AGTTCAAACGATTAGCAGTCGCCGACGTACTTAAGCTGTTCCTGTTATGAGTTTCTCCTG
CTTATCT
■■Homology search results ■■ -
sp_hit_id Q0VF94
Definition sp|Q0VF94|NKPD1_MOUSE NTPase KAP family P-loop domain-containing protein 1 OS=Mus musculus
Align length 38
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914817|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_B11.
(367 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0VF94|NKPD1_MOUSE NTPase KAP family P-loop domain-containing... 30 4.9
sp|Q17RQ9|NKPD1_HUMAN NTPase KAP family P-loop domain-containing... 30 4.9
sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase subunit beta' O... 29 6.4
sp|Q2PT36|AICDA_BOVIN Activation-induced cytidine deaminase OS=B... 29 8.4

>sp|Q0VF94|NKPD1_MOUSE NTPase KAP family P-loop domain-containing
protein 1 OS=Mus musculus GN=Nkpd1 PE=2 SV=2
Length = 599

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1

Query: 22 TCHPKRIVGIKMGNITATAMVKTLLHSQHSPSKLILVV 135
TC+P+R+VG+ + TLL H+P ILVV
Sbjct: 240 TCYPERVVGV-------LNAINTLLSDSHAPFIFILVV 270


>sp|Q17RQ9|NKPD1_HUMAN NTPase KAP family P-loop domain-containing
protein 1 OS=Homo sapiens GN=NKPD1 PE=2 SV=1
Length = 610

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1

Query: 22 TCHPKRIVGIKMGNITATAMVKTLLHSQHSPSKLILVV 135
TC+P+R+VG+ + TLL H+P ILVV
Sbjct: 241 TCYPERVVGV-------LNAINTLLSDSHAPFIFILVV 271


>sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase subunit beta'
OS=Fusobacterium nucleatum subsp. nucleatum GN=rpoC PE=3
SV=1
Length = 1319

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1

Query: 52 KMGNITATAMVKTLLHSQHSPSKLILVVSITS 147
+MG+IT + V + +S+ SP+K+ L++ I+S
Sbjct: 90 RMGHITLASPVSHIWYSKGSPNKMSLIIGISS 121


>sp|Q2PT36|AICDA_BOVIN Activation-induced cytidine deaminase OS=Bos
taurus GN=AICDA PE=2 SV=1
Length = 199

Score = 28.9 bits (63), Expect = 8.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = +3

Query: 45 RYQDGKH-----YCNRHGQNPTSLST-FPFQAYTGGLHHQLHLFIRYIIDWKL 185
R+ G+H Y + +PTS S F G H +L LF+RYI DW L
Sbjct: 19 RWAKGRHETYLCYVVKRRDSPTSFSLDFGHLRNKAGCHVEL-LFLRYISDWDL 70


tr_hit_id A5BF55
Definition tr|A5BF55|A5BF55_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 41
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914817|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_B11.
(367 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5BF55|A5BF55_VITVI Putative uncharacterized protein OS=Vitis... 35 2.4
tr|A7QXQ6|A7QXQ6_VITVI Chromosome undetermined scaffold_229, who... 34 3.2
tr|Q6K3C7|Q6K3C7_ORYSJ Os02g0282000 protein OS=Oryza sativa subs... 33 5.5
tr|B8AFM2|B8AFM2_ORYSI Putative uncharacterized protein OS=Oryza... 33 5.5
tr|A0C575|A0C575_PARTE Chromosome undetermined scaffold_15, whol... 33 9.3
tr|B8BUT2|B8BUT2_THAPS Predicted protein OS=Thalassiosira pseudo... 33 9.3

>tr|A5BF55|A5BF55_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_044320 PE=4 SV=1
Length = 933

Score = 34.7 bits (78), Expect = 2.4
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3

Query: 36 THCRYQDGKHYCNRHGQNPTSLSTFPFQAYTGGLHHQLHLF 158
TH Y+ K C+ HG NP + +F +A++G + LHLF
Sbjct: 799 THVEYEIAKAICDHHGPNPGNQRSFLSEAFSGPV-SSLHLF 838


>tr|A7QXQ6|A7QXQ6_VITVI Chromosome undetermined scaffold_229, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00009317001 PE=4 SV=1
Length = 395

Score = 34.3 bits (77), Expect = 3.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3

Query: 36 THCRYQDGKHYCNRHGQNPTSLSTFPFQAYTGGLHHQLHLF 158
TH Y+ K C+ HG NP + +F + ++ GL LHLF
Sbjct: 175 THVEYETAKAICDHHGPNPGNQRSFLSEIFS-GLVSSLHLF 214


>tr|Q6K3C7|Q6K3C7_ORYSJ Os02g0282000 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0063E14.20 PE=4 SV=1
Length = 1185

Score = 33.5 bits (75), Expect = 5.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3

Query: 180 KLIKTFNTLGFTKCVHRVH*EYSIWAITICDSHLYSADCGEFKRLAVAD 326
KLI ++N LG +C +S+W +T H++S+ ++L +AD
Sbjct: 936 KLINSWNLLGDIECCSLTSLVFSLWHVTSIPLHVWSSSFPALQKLQIAD 984


>tr|B8AFM2|B8AFM2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06761 PE=4 SV=1
Length = 1159

Score = 33.5 bits (75), Expect = 5.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3

Query: 180 KLIKTFNTLGFTKCVHRVH*EYSIWAITICDSHLYSADCGEFKRLAVAD 326
KLI ++N LG +C +S+W +T H++S+ ++L +AD
Sbjct: 910 KLINSWNLLGDIECCSLTSLVFSLWHVTSIPLHVWSSSFPALQKLQIAD 958


>tr|A0C575|A0C575_PARTE Chromosome undetermined scaffold_15, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00006441001 PE=4 SV=1
Length = 478

Score = 32.7 bits (73), Expect = 9.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1

Query: 304 NSPQSAEYRWLSQIVIAQMLYS*CTLCTHFVKPSVLKVLMSFQSI 170
N S EYR + +++AQM+YS LC+ +K +L++L+ I
Sbjct: 110 NENISLEYRSDTLLLLAQMMYSNYELCSELLKQGILQLLIDLVKI 154


>tr|B8BUT2|B8BUT2_THAPS Predicted protein OS=Thalassiosira
pseudonana CCMP1335 GN=THAPSDRAFT_21346 PE=4 SV=1
Length = 502

Score = 32.7 bits (73), Expect = 9.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3

Query: 114 FQAYTGGLHHQLHLFIRYIIDWKLIKTFNTLGF 212
F YTG L HQ+ L I Y+ + KTF LG+
Sbjct: 166 FDTYTGKLDHQIQLLIAYLERCRASKTFIRLGY 198