NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914821
Clone id YMU001_000063_C03
Library
Length 367
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGACACGAAAGGTCAGGAGAGCCAGTAAAGAGTTTGATGGTGCCCGTTAGGGTTTTCAC
CATGTAGGCTTTACCTATTCTCTCTCCTTCCTTTGGTCCTGACATCCTGGGATAATTAAG
CCAATTTGGCTTCTTTTCTGCAATCCTTCCATGCTCTTTCCAGTTTCTGACTCTTGGCAC
CGGGCAGAAGGTTGCATCCTCCCGAATCTCCTTTGGAGCCTCTACCAAGTAGATGAGGTA
GGCTGGGTATTTGTTCAGCCAACCTTTCCTCCATCTAGGTTGAGAATCTACAATCTTCTT
TGATTGTTCATCCTTTGTGATGTCGCCTTCATAAAGAGCGACATACTGCTCCTCCTCTAT
TCTCTTT
■■Homology search results ■■ -
sp_hit_id Q1QTE5
Definition sp|Q1QTE5|AMPA_CHRSD Probable cytosol aminopeptidase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)
Align length 40
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914821|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C03.
         (367 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1QTE5|AMPA_CHRSD Probable cytosol aminopeptidase OS=Chromoha...    32   0.75 
sp|A8EZN9|ENGA_RICCK GTP-binding protein engA OS=Rickettsia cana...    31   1.7  
sp|Q08287|NOP8_YEAST 60S ribosome subunit biogenesis protein NOP...    30   3.7  
sp|Q60767|LY75_MOUSE Lymphocyte antigen 75 OS=Mus musculus GN=Ly...    30   3.7  
sp|Q8ZTU5|SYW_PYRAE Tryptophanyl-tRNA synthetase OS=Pyrobaculum ...    30   4.9  
sp|A5VME2|GAL1_LACRD Galactokinase OS=Lactobacillus reuteri (str...    30   4.9  
sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (stra...    29   6.4  
sp|Q12WR3|RRMJ_METBU Ribosomal RNA large subunit methyltransfera...    29   8.3  
sp|Q0P5M0|PRR19_BOVIN Proline-rich protein 19 OS=Bos taurus GN=P...    29   8.3  

>sp|Q1QTE5|AMPA_CHRSD Probable cytosol aminopeptidase
           OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
           BAA-138 / NCIMB 13768) GN=pepA PE=3 SV=1
          Length = 507

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 274 MEERLAEQIPSLPHLL-GRGSKGDSGGCNLLPGAKSQKLE 158
           ME R AE     PH+L G+G   DSGG +L PGA   +++
Sbjct: 251 MEYRGAEDPEEAPHILVGKGITFDSGGISLKPGAGMDEMK 290


>sp|A8EZN9|ENGA_RICCK GTP-binding protein engA OS=Rickettsia
           canadensis (strain McKiel) GN=engA PE=3 SV=1
          Length = 447

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = -2

Query: 168 RNWKEHGRIAEKKPN-WLNYPRMSGP----KEGERIGKAYM--VKTLTGTIKLFTGSPD 13
           +NW +  +I   K N WLN+   + P    K G+R+   YM  +KT   T KLF+ +P+
Sbjct: 354 KNWNK--KITTSKLNEWLNFTTEAHPLPLQKGGKRVRIKYMTQIKTRPPTFKLFSNNPE 410


>sp|Q08287|NOP8_YEAST 60S ribosome subunit biogenesis protein NOP8
           OS=Saccharomyces cerevisiae GN=NOP8 PE=1 SV=1
          Length = 484

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/89 (16%), Positives = 38/89 (42%)
 Frame = -2

Query: 297 KIVDSQPRWRKGWLNKYPAYLIYLVEAPKEIREDATFCPVPRVRNWKEHGRIAEKKPNWL 118
           K+ +++P W   W           V+  K+++ED       + +NW+ + ++     +W 
Sbjct: 77  KVDEAKPNWESTWA----------VQHAKDLKEDIILNAKMKKKNWQHYKKMENVAKSWK 126

Query: 117 NYPRMSGPKEGERIGKAYMVKTLTGTIKL 31
           ++  +   +  E   K   ++ +T  I +
Sbjct: 127 DHKEVIAGRMREAPRKRSQLRNITFRINV 155


>sp|Q60767|LY75_MOUSE Lymphocyte antigen 75 OS=Mus musculus GN=Ly75
           PE=1 SV=1
          Length = 1723

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 348 QYVALYEGDITKDEQSKKIVDSQPRWRKGWLNKYPAYLIYLVEAP 214
           +YV   +G+ITKD +S K+      W++   +    Y IY  EAP
Sbjct: 482 RYVCKKKGEITKDAESDKLCPPDEGWKR---HGETCYKIYEKEAP 523


>sp|Q8ZTU5|SYW_PYRAE Tryptophanyl-tRNA synthetase OS=Pyrobaculum
           aerophilum GN=trpS PE=3 SV=1
          Length = 375

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -2

Query: 249 YPAYLIYLVEAPKEIREDATFCPVPRVRNWKEHGRIAEKKPNWLNYPRMSGPKEGERIGK 70
           YP+  I +   P E+R +AT   +P   +   + R+A    + L YP+ S          
Sbjct: 194 YPSLQIAVAFLPTELRREATPVLIPCAIDQDPYFRLARDIADALGYPKPS-------TLY 246

Query: 69  AYMVKTLTGTIKLFTGSPD 13
           +  +  LTG  K+   +PD
Sbjct: 247 SKFIMALTGESKMSASNPD 265


>sp|A5VME2|GAL1_LACRD Galactokinase OS=Lactobacillus reuteri (strain
           DSM 20016) GN=galK PE=3 SV=1
          Length = 392

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -2

Query: 354 EEQYVALYEGDITKDEQSKKIV----DSQPRWRKG--WLNKYPAYLIYL 226
           E+  VA+Y  +  K+E SK I     D++P+  K   W+N +   L+YL
Sbjct: 59  EDTTVAIYSANSAKEEDSKIITFDINDTEPQNAKDEKWVNYFKGMLVYL 107


>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain
           RML369-C) GN=polA PE=3 SV=1
          Length = 871

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = -2

Query: 309 EQSKKIVDSQPRWRKGWLNKYPAYLIYLVEAPKEIREDATFCPVPRVRNWKEHGRIAEKK 130
           EQ   I D   RWR+  L K      Y    PK+I           ++     GR++ ++
Sbjct: 563 EQGYPIADLLLRWRQ--LTKLKN--TYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQE 618

Query: 129 PNWLNYPRMSGPKEGERIGKAYMVK 55
           PN  N P  SG  EG +I +A++ +
Sbjct: 619 PNLQNVPIRSG--EGNKIRQAFVAE 641


>sp|Q12WR3|RRMJ_METBU Ribosomal RNA large subunit methyltransferase
           J OS=Methanococcoides burtonii (strain DSM 6242) GN=rrmJ
           PE=3 SV=1
          Length = 267

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 366 KRIEEEQYVALYEGDITKDEQSKKIVD 286
           +RI+E + V   +GDIT DE  KKI++
Sbjct: 70  RRIKEIEGVETIKGDITSDETIKKIIE 96


>sp|Q0P5M0|PRR19_BOVIN Proline-rich protein 19 OS=Bos taurus
           GN=PRR19 PE=2 SV=1
          Length = 363

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 106 PGIIKPIWLLFCNPSMLFPVSDS--WHRAEGCILPNLLWSLYQVDEVGWVFVQPTFPPSR 279
           P  I P  LL   PS L P S +  W  +    LP+L W + Q     W     +FPP R
Sbjct: 307 PWGIGPPQLLPQPPSPLLPRSSALDWSPSPPAPLPSLSWMVAQSSPEAW-----SFPPMR 361

Query: 280 L 282
           L
Sbjct: 362 L 362
tr_hit_id A7EAD7
Definition tr|A7EAD7|A7EAD7_SCLS1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 49
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914821|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C03.
         (367 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7EAD7|A7EAD7_SCLS1 Putative uncharacterized protein OS=Scler...    34   4.2  
tr|A3EWD6|A3EWD6_9BACT Putative uncharacterized protein OS=Lepto...    33   5.4  
tr|Q4S0Z1|Q4S0Z1_TETNG Chromosome 5 SCAF14773, whole genome shot...    33   9.3  

>tr|A7EAD7|A7EAD7_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_02269 PE=4 SV=1
          Length = 916

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/49 (32%), Positives = 31/49 (63%)
 Frame = -2

Query: 279 PRWRKGWLNKYPAYLIYLVEAPKEIREDATFCPVPRVRNWKEHGRIAEK 133
           P +R+  L+ +P+++I+ V AP  ++ D+ +   P+V +W  +GR A K
Sbjct: 278 PYYRENLLSAWPSHMIFEVGAPP-VKLDSNWISNPKVADWYIYGRNARK 325


>tr|A3EWD6|A3EWD6_9BACT Putative uncharacterized protein
           OS=Leptospirillum sp. Group II UBA GN=UBAL2_81350097
           PE=4 SV=1
          Length = 286

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 300 KKIVDSQPRWRKGWLNKYPAYLIYLVEAPKEIREDATFCPVP 175
           KK ++    W  GW  K P Y     EA +EIRE     P P
Sbjct: 242 KKPLEILANWMAGWAQKMPDYARTFQEAAREIREKNNLSPSP 283


>tr|Q4S0Z1|Q4S0Z1_TETNG Chromosome 5 SCAF14773, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00025800001 PE=4 SV=1
          Length = 727

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = -1

Query: 274 MEERLAEQIPSLPHLLGRGSKGDSGGCNLLPGAKSQKLERAWKDCRK 134
           ++E+L EQI +  H +    KG +G C  +P  K ++++  WKDCR+
Sbjct: 625 LKEQLGEQIETHIHRM-TFLKGKTGVCFDVPVDKVKEIQDNWKDCRR 670