BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914823|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C05.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52520|VU3_HHV7J Protein U3 OS=Human herpesvirus 7 (strain JI...    33   1.0  
sp|A4YZ37|GFA_BRASO Glutathione-dependent formaldehyde-activatin...    31   2.9  
sp|Q2RTB8|GLYA2_RHORT Serine hydroxymethyltransferase 2 OS=Rhodo...    30   6.5  
sp|Q82X51|SYV_NITEU Valyl-tRNA synthetase OS=Nitrosomonas europa...    30   8.5  
sp|A5EP16|GFA_BRASB Glutathione-dependent formaldehyde-activatin...    30   8.5  

>sp|P52520|VU3_HHV7J Protein U3 OS=Human herpesvirus 7 (strain JI)
           GN=U3 PE=3 SV=1
          Length = 384

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -2

Query: 466 IHDHLDHFIYLGLKHCLVGNVVCMITSQALKGYILWPHI-----CCLTKALRTRLLSFKI 302
           + D +D F+  GLK CL   V+C    + L+  +  P I     C    A R R L  K 
Sbjct: 178 VGDTIDSFLRKGLKRCLYAYVLC----KCLQFEVSDPEIEAITTCAEILAFRDRHLGEKF 233

Query: 301 AACWPALES 275
              WPA E+
Sbjct: 234 ELRWPAREN 242


>sp|A4YZ37|GFA_BRASO Glutathione-dependent formaldehyde-activating
           enzyme OS=Bradyrhizobium sp. (strain ORS278) GN=gfa PE=3
           SV=1
          Length = 187

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = -2

Query: 466 IHDHLDHFIYLGLKHCLVGNVVCMITSQ----ALKGYILWPHICCLTKALRTRLLSFKIA 299
           IH  +DH +  G  H   G +VC    +     +KG +   H C  TK  +    +F + 
Sbjct: 5   IHPSVDHGVKQGSGHFAGGTLVCKCHDRPVKVGIKGDVAHNHACGCTKCWKPSGATFSVV 64

Query: 298 ACWPALESDKL*LATTRSIIDGS 230
           A  P      L       I+D S
Sbjct: 65  AVVPRQNVTVLENGDKLKIVDAS 87


>sp|Q2RTB8|GLYA2_RHORT Serine hydroxymethyltransferase 2
           OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
           GN=glyA2 PE=3 SV=1
          Length = 430

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 326 NTSIEFQNCCLLASVRVRQVIIGNNSIYNRWIELAKFANVLQR 198
           + SI+F     LA     ++II   S Y R I+ AKF  +  R
Sbjct: 158 DASIDFDEVATLAETHKPKLIIAGGSAYPRIIDFAKFREIADR 200


>sp|Q82X51|SYV_NITEU Valyl-tRNA synthetase OS=Nitrosomonas europaea
           GN=valS PE=3 SV=1
          Length = 918

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 389 VPSSQRLHLVASHMLLDQ-SAANTSIEFQNCCLLASVRVRQVIIGNNSIYNRWIE 228
           VP   R + V   ML DQ   A   +  Q   ++AS +VR V      +YN+W+E
Sbjct: 347 VPRGDRTNTVIEPMLTDQWYLAMEGLAKQGLAVVASGKVRFVPENWTHVYNQWLE 401


>sp|A5EP16|GFA_BRASB Glutathione-dependent formaldehyde-activating
           enzyme OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
           BAA-1182) GN=gfa PE=3 SV=1
          Length = 187

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -2

Query: 466 IHDHLDHFIYLGLKHCLVGNVVCMITSQ----ALKGYILWPHICCLTKALRTRLLSFKIA 299
           IH ++D+ +  G  H   G +VC    +    A+KG +   H C  TK  +    +F + 
Sbjct: 5   IHPYVDNGVKQGSGHFAGGTLVCKCHDRPVKVAVKGDVAHNHACGCTKCWKPSGATFSVI 64

Query: 298 ACWP 287
           A  P
Sbjct: 65  AVVP 68

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914823|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C05.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5VZI4|A5VZI4_PSEP1 Endonuclease III OS=Pseudomonas putida (s...    34   3.7  

>tr|A5VZI4|A5VZI4_PSEP1 Endonuclease III OS=Pseudomonas putida
           (strain F1 / ATCC 700007) GN=Pput_1133 PE=4 SV=1
          Length = 335

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = -2

Query: 361 WP-HICCLTKAL-----RTRLLSFKIAACWPALESDKL*LATTRSIIDGSNSPNLRTCCK 200
           WP   CCLT        RT  LS  +A CW    +  L   T  S    ++ P +R CC 
Sbjct: 43  WPVTTCCLTNTAGACSQRTSALSLPVACCWAPAANGWL---TMPSCTWPASHP-VRYCCW 98

Query: 199 DTCLVQCTACFH*L*GH 149
           D C     ACF  L  H
Sbjct: 99  DCCWPCTIACFRALPTH 115