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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914824
Clone id YMU001_000063_C07
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTGTTTTTACACAAAACTTCCATTAAGGGCATGCGTTGAGCACTATGTAA
CAATATACAAAGCATAGCTTGCTTGCAAGTGCGCTTACAAGCAGCAAAAATGCTGTATAC
AAATCCTGCAGCCCTCAAAAACTCAATGAACTCCGGACATATAATCCTAGCATAATGTGA
AGTCACCCACCTTCGTACATGATAACCACTGCATGGAAAGATCCTTCAAAATAGCTCTCG
ATGTCTATGCTGAGCGCCTTCTCTTGGAGCGCTTACTTCGTTTTGAGGCAGCGGAAGTTG
CAGCAGCCTCACTTTTGCTATAAATCTCCTCCAAAGAGTCCTTCGCAGAAGCAATGTTAT
CAGACTCGATCCCATCATTCTCTACGTCAGATTCAGATGTAGCAGCAGTTGTCAAATTGA
CTGAATTA
■■Homology search results ■■ -
sp_hit_id Q9Y1T5
Definition sp|Q9Y1T5|SUH_DROSI Protein suppressor of hairless (Fragment) OS=Drosophila simulans
Align length 41
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914824|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C07.
         (410 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y1T5|SUH_DROSI Protein suppressor of hairless (Fragment) OS...    30   3.8  
sp|P28159|SUH_DROME Suppressor of hairless protein OS=Drosophila...    30   3.8  
sp|Q0V8R7|NSUN4_BOVIN Putative methyltransferase NSUN4 OS=Bos ta...    29   6.5  
sp|Q9CZ57|NSUN4_MOUSE Putative methyltransferase NSUN4 OS=Mus mu...    29   8.5  

>sp|Q9Y1T5|SUH_DROSI Protein suppressor of hairless (Fragment)
           OS=Drosophila simulans GN=Su(H) PE=3 SV=1
          Length = 102

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 268 RQRKLQQPHFCYKSPPKSPSQKQCYQTRSHHSLRQIQM*QQ 390
           +Q+    PHF    P    SQ+Q  Q + HH  +Q Q  QQ
Sbjct: 15  QQQSQDMPHFGLPGPQPPSSQQQQQQMQVHHQQQQQQQQQQ 55


>sp|P28159|SUH_DROME Suppressor of hairless protein OS=Drosophila
           melanogaster GN=Su(H) PE=1 SV=1
          Length = 594

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 268 RQRKLQQPHFCYKSPPKSPSQKQCYQTRSHHSLRQIQM*QQ 390
           +Q+    PHF    P    SQ+Q  Q + HH  +Q Q  QQ
Sbjct: 38  QQQSQDMPHFGLPGPQPPSSQQQQQQLQVHHQQQQQQQQQQ 78


>sp|Q0V8R7|NSUN4_BOVIN Putative methyltransferase NSUN4 OS=Bos
           taurus GN=NSUN4 PE=2 SV=2
          Length = 384

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 50  QSIACLQVRLQAAKMLYTNPAALKNSMNSGHIILA*CEVTHLR 178
           Q +  LQV+L AA +L T P         GHI+ + C ++HL+
Sbjct: 282 QMLPVLQVQLLAAGLLATKPG--------GHIVYSTCSLSHLQ 316


>sp|Q9CZ57|NSUN4_MOUSE Putative methyltransferase NSUN4 OS=Mus
           musculus GN=Nsun4 PE=2 SV=1
          Length = 381

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 50  QSIACLQVRLQAAKMLYTNPAALKNSMNSGHIILA*CEVTHLR 178
           Q +  LQV+L AA +L T P         GH++ + C ++HL+
Sbjct: 279 QMLPMLQVQLLAAGLLATKP--------GGHVVYSTCSLSHLQ 313
tr_hit_id B2TG92
Definition tr|B2TG92|B2TG92_BURPP D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
Align length 54
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914824|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C07.
         (410 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2TG92|B2TG92_BURPP D-isomer specific 2-hydroxyacid dehydroge...    34   4.2  

>tr|B2TG92|B2TG92_BURPP D-isomer specific 2-hydroxyacid
           dehydrogenase NAD-binding OS=Burkholderia phytofirmans
           (strain DSM 17436 / PsJN) GN=Bphyt_5619 PE=4 SV=1
          Length = 329

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -3

Query: 174 RWVTSHYARIICPEFIEFLRAAGFVYSIFAACKRTCKQAMLCILLHSAQRMPLM 13
           RWV +H A +  P F+E  +    V S   A  RT   A L  LL  A+R+PL+
Sbjct: 84  RWVHAHSAGVDRPIFVELRQRGVQVTSSSGANARTVAHAALAGLLALARRLPLL 137