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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914825
Clone id YMU001_000063_C08
Library
Length 602
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTAGATATTACCTGCAGGTACTCCCCATATCTAGATACATGCAATCCAATATCGATTGAC
ACACTCAAATGCTTTTGAGACCTCTGTTTACACTTGTCAAGCCATGAGCTTCACACACAA
CTTCTCACCTACACACATATGCATTGGCAAACAATTAGGTACAAGAGCGAGAGAGATAAT
TTGAGAGTAGAGCGGGCAAAGTTTATGGTAAAATCCTTCAAAAAATAGGAGTACAATGAG
GGAGTTTCAATTTCCCTTCTTCTTGTCAATTGATCCCTTCAAACTTGGAACCATGGTTTT
TCTCCTGCTTGTGCTATCAGCCACACTCCTCTTTGCTTTGATCTGCCCTCGTCTTGCACT
TTGGGAACCCCCTATTATGTAGTCCCTTCCTTTCTTTAAGGCCTTCTCTGCTACAATATC
TGTCGCTCTCACCAGCAGCTCTCGATCCCCTTTAAAAGTGCCTTCTTATGGCACGTCCTA
CTGGTCACTCTTCTCCTGCCTGGCAGGTCGCCCTCCTCTTGCTCGGCTGTTCTTGGCCTG
CAGCTCACGACCCCTCTGTCGTCCCCAAGAGGAGTGCTTCTTCTCATCACCAGTTCACAC
AC
■■Homology search results ■■ -
sp_hit_id Q92345
Definition sp|Q92345|PDC2_SCHPO Probable pyruvate decarboxylase C1F8.07c OS=Schizosaccharomyces pombe
Align length 66
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914825|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C08.
         (602 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92345|PDC2_SCHPO Probable pyruvate decarboxylase C1F8.07c OS...    33   1.1  
sp|Q6ZVD7|STOX1_HUMAN Storkhead-box protein 1 OS=Homo sapiens GN...    31   5.5  

>sp|Q92345|PDC2_SCHPO Probable pyruvate decarboxylase C1F8.07c
           OS=Schizosaccharomyces pombe GN=SPAC1F8.07c PE=1 SV=1
          Length = 594

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -3

Query: 447 DRELLVRATDIVAEKALKKGRDYIIGGSQSARRGQIKAKRSVADSTSRRKTMVPSLKGSI 268
           D+E L +ATDI AE   KK +  ++ G +    G   A   +A++ +    ++P+ KG  
Sbjct: 197 DKESLEKATDIAAELISKKEKPILLAGPKLRAAGAESAFVKLAEALNCAAFIMPAAKGFY 256

Query: 267 DKKKGN 250
            ++  N
Sbjct: 257 SEEHKN 262


>sp|Q6ZVD7|STOX1_HUMAN Storkhead-box protein 1 OS=Homo sapiens
           GN=STOX1 PE=1 SV=2
          Length = 989

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 21/66 (31%), Positives = 35/66 (53%)
 Frame = -2

Query: 421 RYCSREGLKERKGLHNRGFPKCKTRADQSKEECG**HKQEKNHGSKFEGIN*QEEGKLKL 242
           +Y S+EG+K+R+GL  +   +  +R D+ K          +N GS+F+  + + E   KL
Sbjct: 405 KYPSKEGVKKRQGLSAKPQGQGHSRRDRHK---------ARNQGSEFQPGSIRLEKHPKL 455

Query: 241 PHCTPI 224
           P   PI
Sbjct: 456 PATQPI 461
tr_hit_id B0DDZ4
Definition tr|B0DDZ4|B0DDZ4_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 49
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914825|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C08.
         (602 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0DDZ4|B0DDZ4_LACBS Predicted protein OS=Laccaria bicolor (st...    35   2.6  
tr|B5GIY1|B5GIY1_9ACTO Membrane protein SC1C225c OS=Streptomyces...    34   5.7  
tr|Q2GUF1|Q2GUF1_CHAGB Predicted protein OS=Chaetomium globosum ...    34   5.7  

>tr|B0DDZ4|B0DDZ4_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_328174 PE=4 SV=1
          Length = 667

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +2

Query: 368 PPIM*SLPFFKAFSATISVALTSSSRSPLKVPSYGTSYWSLFSCLAGRP 514
           P I+   P F+  S + S+  T+SSR P     Y T+ +S+ SCLA  P
Sbjct: 524 PSIVPHAPSFQPPSPSFSLRPTASSRRPTASSRYPTTLFSILSCLAASP 572


>tr|B5GIY1|B5GIY1_9ACTO Membrane protein SC1C225c OS=Streptomyces
           sp. SPB74 GN=SSBG_04240 PE=4 SV=1
          Length = 1420

 Score = 34.3 bits (77), Expect = 5.7
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = -3

Query: 462 GTFKGDRELLVRATDIVAEKALKKGRDYIIGGSQSARRGQIKAKRSVADST-------SR 304
           G + GD E L++  D   +  +K  RDY  G   +    +++AKRS  D T       ++
Sbjct: 315 GAYAGDPEDLLKPIDPDEQPTIKGARDYAQGSLSTQGGMELRAKRSYKDWTDSASEEINQ 374

Query: 303 RKTMVPSLKGSIDKK 259
            KT+  +L G +++K
Sbjct: 375 MKTIELTLLGQMEQK 389


>tr|Q2GUF1|Q2GUF1_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_08403 PE=4 SV=1
          Length = 121

 Score = 34.3 bits (77), Expect = 5.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 422 VALTSSSRSPLKVPSYGTSYWSLFSCLAGRPPLARLFLACSSRP 553
           V   +++RSP++VP   T  WSL +C+   P LAR+   C   P
Sbjct: 39  VVAVTANRSPIEVPVKPTRQWSLQTCIL-VPRLARIQCGCGQEP 81