BP914826 |
Clone id |
YMU001_000063_C11 |
Library |
YMU01 |
Length |
138 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000063_C11. |
Accession |
BP914826 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAGGCATGCTCTTAGAGATGGACAACAATGAGCTTCTCTTTTTGCTAGACTCAGAAGATG CGTTGGCTTCTAAAGTCGAAGAAGCAGAGATAGTGCTTCTGCAACACTCAAAATCAGCTC AAGAGGGCTGAGTTGGTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q4WK03 |
Definition |
sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus |
Align length |
42 |
Score (bit) |
48.1 |
E-value |
1.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914826|Adiantum capillus-veneris mRNA, clone: YMU001_000063_C11. (138 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic ... 48 1e-05 sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic ... 46 5e-05 sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic ... 46 7e-05 sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=... 45 9e-05 sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sa... 45 1e-04 sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A ... 45 1e-04 sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B ... 44 2e-04 sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenop... 44 3e-04 sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenop... 44 3e-04 sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sa... 44 3e-04 sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus no... 44 3e-04 sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo a... 44 3e-04 sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus mus... 44 3e-04 sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sa... 44 3e-04 sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos tau... 44 3e-04 sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Ho... 43 6e-04 sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic ... 42 0.001 sp|Q5KBW2|PABP_CRYNE Polyadenylate-binding protein, cytoplasmic ... 42 0.001 sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic ... 42 0.001 sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic ... 42 0.001 sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila... 42 0.001 sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic ... 41 0.002 sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic ... 40 0.004 sp|A4QUF0|PABP_MAGGR Polyadenylate-binding protein, cytoplasmic ... 40 0.005 sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic ... 39 0.010 sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabido... 38 0.014 sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabido... 38 0.014 sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabido... 38 0.014 sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 (Fragment) O... 38 0.018 sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus mus... 37 0.030
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1 Length = 753
Score = 48.1 bits (113), Expect = 1e-05 Identities = 25/42 (59%), Positives = 32/42 (76%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128 GMLLEMDNNELL LL+ E+AL +KV+EA V ++ K+ EG Sbjct: 689 GMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEG 730
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1 Length = 754
Score = 46.2 bits (108), Expect = 5e-05 Identities = 24/42 (57%), Positives = 31/42 (73%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128 GMLLEMDN ELL LL+ +DAL +KV+EA V ++ K+ EG Sbjct: 690 GMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEG 731
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) GN=pab1 PE=3 SV=1 Length = 751
Score = 45.8 bits (107), Expect = 7e-05 Identities = 24/42 (57%), Positives = 31/42 (73%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128 GMLLEMDN ELL LL+ E+AL +KV+EA V ++ K+ EG Sbjct: 687 GMLLEMDNTELLGLLEDEEALRAKVDEALSVYDEYMKNKGEG 728
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1 Length = 629
Score = 45.4 bits (106), Expect = 9e-05 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 6/47 (12%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH------SKSAQE 125 GMLLE+DN+ELL +L+S ++L SKVEEA VL H KSAQ+ Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 Length = 631
Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/35 (60%), Positives = 29/35 (82%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107 GMLLE+DN+ELL++L+S ++L SKV+EA VL H Sbjct: 578 GMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAH 612
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2 Length = 629
Score = 44.7 bits (104), Expect = 1e-04 Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 6/46 (13%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH------SKSAQ 122 GMLLE+DN+ELL +L+S ++L SKVEEA VL H KSAQ Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENAQKSAQ 625
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1 Length = 629
Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/35 (62%), Positives = 28/35 (80%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107 GMLLE+DN+ELL +L+S ++L SKVEEA VL H Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAH 614
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1 Length = 633
Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/35 (60%), Positives = 28/35 (80%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107 GMLLE+DN+ELL +L+S ++L SKV+EA VL H Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 615
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3 Length = 633
Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/35 (60%), Positives = 28/35 (80%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107 GMLLE+DN+ELL +L+S ++L SKV+EA VL H Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 615
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 Length = 644
Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/35 (60%), Positives = 28/35 (80%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107 GMLLE+DN+ELL +L+S ++L SKV+EA VL H Sbjct: 592 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
O64985 |
Definition |
tr|O64985|O64985_CHLRE Poly(A) binding protein RB47 OS=Chlamydomonas reinhardtii |
Align length |
41 |
Score (bit) |
52.0 |
E-value |
1.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914826|Adiantum capillus-veneris mRNA, clone: YMU001_000063_C11. (138 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|O64985|O64985_CHLRE Poly(A) binding protein RB47 OS=Chlamydom... 52 1e-05 tr|A8HME6|A8HME6_CHLRE Polyadenylate-binding protein RB47 OS=Chl... 52 1e-05 tr|B0XND2|B0XND2_ASPFC Polyadenylate-binding protein OS=Aspergil... 48 2e-04 tr|A7QJ95|A7QJ95_VITVI Chromosome chr8 scaffold_106, whole genom... 48 3e-04 tr|B6PQ81|B6PQ81_BRAFL Putative uncharacterized protein OS=Branc... 47 4e-04 tr|A3KLJ7|A3KLJ7_STRPU PolyA-binding protein OS=Strongylocentrot... 46 8e-04 tr|Q4Z2X5|Q4Z2X5_PLABE Polyadenylate-binding protein, putative O... 46 0.001 tr|O57336|O57336_PETMA Polyadenylate binding protein OS=Petromyz... 45 0.001 tr|B7GDQ3|B7GDQ3_PHATR Predicted protein OS=Phaeodactylum tricor... 45 0.001 tr|Q8QGJ7|Q8QGJ7_FUGRU PolyA-binding protein OS=Fugu rubripes GN... 45 0.002 tr|Q7T3G5|Q7T3G5_DANRE Poly(A) binding protein, cytoplasmic 4 (I... 45 0.002 tr|Q4RNX8|Q4RNX8_TETNG Chromosome 10 SCAF15009, whole genome sho... 45 0.002 tr|Q2VIP2|Q2VIP2_PANTR PABP3 (Fragment) OS=Pan troglodytes PE=4 ... 45 0.002 tr|Q6E7B9|Q6E7B9_OIKDI Polyadenylate binding protein OS=Oikopleu... 45 0.002 tr|Q5VX58|Q5VX58_HUMAN Poly(A) binding protein, cytoplasmic 3 OS... 45 0.002 tr|Q3ZCS4|Q3ZCS4_HUMAN Poly(A) binding protein, cytoplasmic 3 OS... 45 0.002 tr|Q2VIP3|Q2VIP3_HUMAN PABP3 (Fragment) OS=Homo sapiens PE=4 SV=1 45 0.002 tr|Q6GNR8|Q6GNR8_XENLA MGC80927 protein OS=Xenopus laevis GN=pab... 45 0.002 tr|Q2VIN9|Q2VIN9_HYLLA PABP3 (Fragment) OS=Hylobates lar PE=4 SV=1 45 0.002 tr|Q7QH99|Q7QH99_ANOGA AGAP011092-PA OS=Anopheles gambiae GN=AGA... 45 0.002 tr|B6H844|B6H844_PENCH Pc16g09030 protein OS=Penicillium chrysog... 45 0.002 tr|A8NF86|A8NF86_COPC7 Putative uncharacterized protein OS=Copri... 45 0.002 tr|Q2VIP1|Q2VIP1_9PRIM PABP3 (Fragment) OS=Gorilla gorilla PE=4 ... 44 0.003 tr|Q4XNT8|Q4XNT8_PLACH Putative uncharacterized protein OS=Plasm... 44 0.003 tr|B6NQU3|B6NQU3_BRAFL Putative uncharacterized protein OS=Branc... 44 0.003 tr|B3S125|B3S125_TRIAD Putative uncharacterized protein OS=Trich... 44 0.003 tr|Q2VIP0|Q2VIP0_PONPY PABP3 (Fragment) OS=Pongo pygmaeus PE=4 SV=1 44 0.004 tr|Q2VIN7|Q2VIN7_AOTTR PABP3 (Fragment) OS=Aotus trivirgatus PE=... 44 0.004 tr|Q53GL4|Q53GL4_HUMAN PABPC4 protein variant (Fragment) OS=Homo... 44 0.004 tr|Q6P3L1|Q6P3L1_DANRE Poly A binding protein, cytoplasmic 1 b O... 44 0.005
>tr|O64985|O64985_CHLRE Poly(A) binding protein RB47 OS=Chlamydomonas reinhardtii GN=PABP PE=2 SV=1 Length = 623
Score = 52.0 bits (123), Expect = 1e-05 Identities = 27/41 (65%), Positives = 32/41 (78%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQE 125 GMLLEMDN ELL LL+S +AL SKV+EA VL QH+ A+E Sbjct: 580 GMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHNVIAEE 620
>tr|A8HME6|A8HME6_CHLRE Polyadenylate-binding protein RB47 OS=Chlamydomonas reinhardtii GN=RB47 PE=4 SV=1 Length = 636
Score = 52.0 bits (123), Expect = 1e-05 Identities = 27/41 (65%), Positives = 32/41 (78%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQE 125 GMLLEMDN ELL LL+S +AL SKV+EA VL QH+ A+E Sbjct: 593 GMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHNVIAEE 633
>tr|B0XND2|B0XND2_ASPFC Polyadenylate-binding protein OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_004530 PE=4 SV=1 Length = 753
Score = 48.1 bits (113), Expect = 2e-04 Identities = 25/42 (59%), Positives = 32/42 (76%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128 GMLLEMDNNELL LL+ E+AL +KV+EA V ++ K+ EG Sbjct: 689 GMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEG 730
>tr|A7QJ95|A7QJ95_VITVI Chromosome chr8 scaffold_106, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000555001 PE=4 SV=1 Length = 606
Score = 47.8 bits (112), Expect = 3e-04 Identities = 26/42 (61%), Positives = 34/42 (80%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128 GMLLEMDN+ELL LL+S ++LA+KVEEA + +L+ SKS G Sbjct: 550 GMLLEMDNSELLLLLESPESLAAKVEEA-VQVLKLSKSKPSG 590
>tr|B6PQ81|B6PQ81_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_109665 PE=4 SV=1 Length = 149
Score = 47.4 bits (111), Expect = 4e-04 Identities = 23/35 (65%), Positives = 28/35 (80%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107 GMLLE+DN ELL +L+S D+L +KVEEA VLL H Sbjct: 102 GMLLELDNTELLDMLESRDSLRAKVEEAVAVLLSH 136
>tr|A3KLJ7|A3KLJ7_STRPU PolyA-binding protein OS=Strongylocentrotus purpuratus GN=pabp PE=2 SV=1 Length = 640
Score = 46.2 bits (108), Expect = 8e-04 Identities = 22/37 (59%), Positives = 29/37 (78%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSK 113 GMLLE+DN+ELL +L+ ++AL KVEEA VL+ H K Sbjct: 590 GMLLEIDNSELLHMLEVQEALEKKVEEAVQVLMNHQK 626
>tr|Q4Z2X5|Q4Z2X5_PLABE Polyadenylate-binding protein, putative OS=Plasmodium berghei GN=PB001286.00.0 PE=4 SV=1 Length = 833
Score = 45.8 bits (107), Expect = 0.001 Identities = 22/37 (59%), Positives = 32/37 (86%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSK 113 GM+LEMDN+ELL LL++ED L K++EA +V+LQ++K Sbjct: 798 GMMLEMDNSELLILLENEDQLKKKIDEA-LVVLQNAK 833
>tr|O57336|O57336_PETMA Polyadenylate binding protein OS=Petromyzon marinus GN=PABP PE=2 SV=1 Length = 630
Score = 45.4 bits (106), Expect = 0.001 Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 2/47 (4%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH--SKSAQEG*VG 137 GMLLE+DN+ELL +L+S ++L +KVEEA VL H ++AQ+ VG Sbjct: 582 GMLLEIDNSELLHMLESPESLRAKVEEAVAVLQAHQAKEAAQKAAVG 628
>tr|B7GDQ3|B7GDQ3_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1 GN=PHATRDRAFT_23959 PE=4 SV=1 Length = 605
Score = 45.4 bits (106), Expect = 0.001 Identities = 24/35 (68%), Positives = 27/35 (77%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107 GMLLEMDN+ELL LL+S DAL SK+ EA VL H Sbjct: 566 GMLLEMDNSELLHLLESPDALNSKISEALQVLEAH 600
>tr|Q8QGJ7|Q8QGJ7_FUGRU PolyA-binding protein OS=Fugu rubripes GN=PABP PE=4 SV=1 Length = 623
Score = 45.1 bits (105), Expect = 0.002 Identities = 22/35 (62%), Positives = 28/35 (80%) Frame = +3
Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107 GMLLE+DN+ELL +L+S ++L SKVEEA VL H Sbjct: 567 GMLLEIDNSELLHMLESHESLRSKVEEAVAVLQAH 601
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