BP914826
Clone id YMU001_000063_C11
Library
Length 138
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAGGCATGCTCTTAGAGATGGACAACAATGAGCTTCTCTTTTTGCTAGACTCAGAAGATG
CGTTGGCTTCTAAAGTCGAAGAAGCAGAGATAGTGCTTCTGCAACACTCAAAATCAGCTC
AAGAGGGCTGAGTTGGTT
■■Homology search results ■■ -
sp_hit_id Q4WK03
Definition sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus
Align length 42
Score (bit) 48.1
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914826|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C11.
(138 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic ... 48 1e-05
sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic ... 46 5e-05
sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic ... 46 7e-05
sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=... 45 9e-05
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sa... 45 1e-04
sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A ... 45 1e-04
sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B ... 44 2e-04
sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenop... 44 3e-04
sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenop... 44 3e-04
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sa... 44 3e-04
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus no... 44 3e-04
sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo a... 44 3e-04
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus mus... 44 3e-04
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sa... 44 3e-04
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos tau... 44 3e-04
sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Ho... 43 6e-04
sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic ... 42 0.001
sp|Q5KBW2|PABP_CRYNE Polyadenylate-binding protein, cytoplasmic ... 42 0.001
sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic ... 42 0.001
sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic ... 42 0.001
sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila... 42 0.001
sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic ... 41 0.002
sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic ... 40 0.004
sp|A4QUF0|PABP_MAGGR Polyadenylate-binding protein, cytoplasmic ... 40 0.005
sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic ... 39 0.010
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabido... 38 0.014
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabido... 38 0.014
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabido... 38 0.014
sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 (Fragment) O... 38 0.018
sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus mus... 37 0.030

>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1
Length = 753

Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128
GMLLEMDNNELL LL+ E+AL +KV+EA V ++ K+ EG
Sbjct: 689 GMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEG 730


>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1
Length = 754

Score = 46.2 bits (108), Expect = 5e-05
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128
GMLLEMDN ELL LL+ +DAL +KV+EA V ++ K+ EG
Sbjct: 690 GMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEG 731


>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751

Score = 45.8 bits (107), Expect = 7e-05
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128
GMLLEMDN ELL LL+ E+AL +KV+EA V ++ K+ EG
Sbjct: 687 GMLLEMDNTELLGLLEDEEALRAKVDEALSVYDEYMKNKGEG 728


>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein
OS=Xenopus tropicalis GN=epabp PE=2 SV=1
Length = 629

Score = 45.4 bits (106), Expect = 9e-05
Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 6/47 (12%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH------SKSAQE 125
GMLLE+DN+ELL +L+S ++L SKVEEA VL H KSAQ+
Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626


>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo
sapiens GN=PABPC3 PE=1 SV=2
Length = 631

Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107
GMLLE+DN+ELL++L+S ++L SKV+EA VL H
Sbjct: 578 GMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAH 612


>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A
OS=Xenopus laevis GN=epabp-A PE=1 SV=2
Length = 629

Score = 44.7 bits (104), Expect = 1e-04
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 6/46 (13%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH------SKSAQ 122
GMLLE+DN+ELL +L+S ++L SKVEEA VL H KSAQ
Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENAQKSAQ 625


>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B
OS=Xenopus laevis GN=epabp-B PE=2 SV=1
Length = 629

Score = 44.3 bits (103), Expect = 2e-04
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107
GMLLE+DN+ELL +L+S ++L SKVEEA VL H
Sbjct: 580 GMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAH 614


>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus
laevis GN=pabpc1-B PE=2 SV=1
Length = 633

Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107
GMLLE+DN+ELL +L+S ++L SKV+EA VL H
Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 615


>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus
laevis GN=pabpc1-A PE=1 SV=3
Length = 633

Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107
GMLLE+DN+ELL +L+S ++L SKV+EA VL H
Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 615


>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo
sapiens GN=PABPC4 PE=1 SV=1
Length = 644

Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107
GMLLE+DN+ELL +L+S ++L SKV+EA VL H
Sbjct: 592 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626


tr_hit_id O64985
Definition tr|O64985|O64985_CHLRE Poly(A) binding protein RB47 OS=Chlamydomonas reinhardtii
Align length 41
Score (bit) 52.0
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914826|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_C11.
(138 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|O64985|O64985_CHLRE Poly(A) binding protein RB47 OS=Chlamydom... 52 1e-05
tr|A8HME6|A8HME6_CHLRE Polyadenylate-binding protein RB47 OS=Chl... 52 1e-05
tr|B0XND2|B0XND2_ASPFC Polyadenylate-binding protein OS=Aspergil... 48 2e-04
tr|A7QJ95|A7QJ95_VITVI Chromosome chr8 scaffold_106, whole genom... 48 3e-04
tr|B6PQ81|B6PQ81_BRAFL Putative uncharacterized protein OS=Branc... 47 4e-04
tr|A3KLJ7|A3KLJ7_STRPU PolyA-binding protein OS=Strongylocentrot... 46 8e-04
tr|Q4Z2X5|Q4Z2X5_PLABE Polyadenylate-binding protein, putative O... 46 0.001
tr|O57336|O57336_PETMA Polyadenylate binding protein OS=Petromyz... 45 0.001
tr|B7GDQ3|B7GDQ3_PHATR Predicted protein OS=Phaeodactylum tricor... 45 0.001
tr|Q8QGJ7|Q8QGJ7_FUGRU PolyA-binding protein OS=Fugu rubripes GN... 45 0.002
tr|Q7T3G5|Q7T3G5_DANRE Poly(A) binding protein, cytoplasmic 4 (I... 45 0.002
tr|Q4RNX8|Q4RNX8_TETNG Chromosome 10 SCAF15009, whole genome sho... 45 0.002
tr|Q2VIP2|Q2VIP2_PANTR PABP3 (Fragment) OS=Pan troglodytes PE=4 ... 45 0.002
tr|Q6E7B9|Q6E7B9_OIKDI Polyadenylate binding protein OS=Oikopleu... 45 0.002
tr|Q5VX58|Q5VX58_HUMAN Poly(A) binding protein, cytoplasmic 3 OS... 45 0.002
tr|Q3ZCS4|Q3ZCS4_HUMAN Poly(A) binding protein, cytoplasmic 3 OS... 45 0.002
tr|Q2VIP3|Q2VIP3_HUMAN PABP3 (Fragment) OS=Homo sapiens PE=4 SV=1 45 0.002
tr|Q6GNR8|Q6GNR8_XENLA MGC80927 protein OS=Xenopus laevis GN=pab... 45 0.002
tr|Q2VIN9|Q2VIN9_HYLLA PABP3 (Fragment) OS=Hylobates lar PE=4 SV=1 45 0.002
tr|Q7QH99|Q7QH99_ANOGA AGAP011092-PA OS=Anopheles gambiae GN=AGA... 45 0.002
tr|B6H844|B6H844_PENCH Pc16g09030 protein OS=Penicillium chrysog... 45 0.002
tr|A8NF86|A8NF86_COPC7 Putative uncharacterized protein OS=Copri... 45 0.002
tr|Q2VIP1|Q2VIP1_9PRIM PABP3 (Fragment) OS=Gorilla gorilla PE=4 ... 44 0.003
tr|Q4XNT8|Q4XNT8_PLACH Putative uncharacterized protein OS=Plasm... 44 0.003
tr|B6NQU3|B6NQU3_BRAFL Putative uncharacterized protein OS=Branc... 44 0.003
tr|B3S125|B3S125_TRIAD Putative uncharacterized protein OS=Trich... 44 0.003
tr|Q2VIP0|Q2VIP0_PONPY PABP3 (Fragment) OS=Pongo pygmaeus PE=4 SV=1 44 0.004
tr|Q2VIN7|Q2VIN7_AOTTR PABP3 (Fragment) OS=Aotus trivirgatus PE=... 44 0.004
tr|Q53GL4|Q53GL4_HUMAN PABPC4 protein variant (Fragment) OS=Homo... 44 0.004
tr|Q6P3L1|Q6P3L1_DANRE Poly A binding protein, cytoplasmic 1 b O... 44 0.005

>tr|O64985|O64985_CHLRE Poly(A) binding protein RB47
OS=Chlamydomonas reinhardtii GN=PABP PE=2 SV=1
Length = 623

Score = 52.0 bits (123), Expect = 1e-05
Identities = 27/41 (65%), Positives = 32/41 (78%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQE 125
GMLLEMDN ELL LL+S +AL SKV+EA VL QH+ A+E
Sbjct: 580 GMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHNVIAEE 620


>tr|A8HME6|A8HME6_CHLRE Polyadenylate-binding protein RB47
OS=Chlamydomonas reinhardtii GN=RB47 PE=4 SV=1
Length = 636

Score = 52.0 bits (123), Expect = 1e-05
Identities = 27/41 (65%), Positives = 32/41 (78%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQE 125
GMLLEMDN ELL LL+S +AL SKV+EA VL QH+ A+E
Sbjct: 593 GMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHNVIAEE 633


>tr|B0XND2|B0XND2_ASPFC Polyadenylate-binding protein OS=Aspergillus
fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=AFUB_004530 PE=4 SV=1
Length = 753

Score = 48.1 bits (113), Expect = 2e-04
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128
GMLLEMDNNELL LL+ E+AL +KV+EA V ++ K+ EG
Sbjct: 689 GMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEG 730


>tr|A7QJ95|A7QJ95_VITVI Chromosome chr8 scaffold_106, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00000555001
PE=4 SV=1
Length = 606

Score = 47.8 bits (112), Expect = 3e-04
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSKSAQEG 128
GMLLEMDN+ELL LL+S ++LA+KVEEA + +L+ SKS G
Sbjct: 550 GMLLEMDNSELLLLLESPESLAAKVEEA-VQVLKLSKSKPSG 590


>tr|B6PQ81|B6PQ81_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_109665 PE=4 SV=1
Length = 149

Score = 47.4 bits (111), Expect = 4e-04
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107
GMLLE+DN ELL +L+S D+L +KVEEA VLL H
Sbjct: 102 GMLLELDNTELLDMLESRDSLRAKVEEAVAVLLSH 136


>tr|A3KLJ7|A3KLJ7_STRPU PolyA-binding protein OS=Strongylocentrotus
purpuratus GN=pabp PE=2 SV=1
Length = 640

Score = 46.2 bits (108), Expect = 8e-04
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSK 113
GMLLE+DN+ELL +L+ ++AL KVEEA VL+ H K
Sbjct: 590 GMLLEIDNSELLHMLEVQEALEKKVEEAVQVLMNHQK 626


>tr|Q4Z2X5|Q4Z2X5_PLABE Polyadenylate-binding protein, putative
OS=Plasmodium berghei GN=PB001286.00.0 PE=4 SV=1
Length = 833

Score = 45.8 bits (107), Expect = 0.001
Identities = 22/37 (59%), Positives = 32/37 (86%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQHSK 113
GM+LEMDN+ELL LL++ED L K++EA +V+LQ++K
Sbjct: 798 GMMLEMDNSELLILLENEDQLKKKIDEA-LVVLQNAK 833


>tr|O57336|O57336_PETMA Polyadenylate binding protein OS=Petromyzon
marinus GN=PABP PE=2 SV=1
Length = 630

Score = 45.4 bits (106), Expect = 0.001
Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH--SKSAQEG*VG 137
GMLLE+DN+ELL +L+S ++L +KVEEA VL H ++AQ+ VG
Sbjct: 582 GMLLEIDNSELLHMLESPESLRAKVEEAVAVLQAHQAKEAAQKAAVG 628


>tr|B7GDQ3|B7GDQ3_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_23959 PE=4 SV=1
Length = 605

Score = 45.4 bits (106), Expect = 0.001
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107
GMLLEMDN+ELL LL+S DAL SK+ EA VL H
Sbjct: 566 GMLLEMDNSELLHLLESPDALNSKISEALQVLEAH 600


>tr|Q8QGJ7|Q8QGJ7_FUGRU PolyA-binding protein OS=Fugu rubripes
GN=PABP PE=4 SV=1
Length = 623

Score = 45.1 bits (105), Expect = 0.002
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3

Query: 3 GMLLEMDNNELLFLLDSEDALASKVEEAEIVLLQH 107
GMLLE+DN+ELL +L+S ++L SKVEEA VL H
Sbjct: 567 GMLLEIDNSELLHMLESHESLRSKVEEAVAVLQAH 601