| BP914827 |
| Clone id |
YMU001_000063_C12 |
| Library |
YMU01 |
| Length |
574 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000063_C12. |
| Accession |
BP914827 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
AGGGGAGTTAGTTAGTCGCCGTGTGCTGGACTTGAGACAAAGACAGATGCGAAACCTATT GCTTGCTCTCTGCGTCTCTCAAGGGGTTCCTATGATGACAATGGGTGATGAATATGCTCA TACAAAGGGAGGAAACAACAATACATATTGTCATGACAACTATATAAACTATTTCAGATG GGATAAGAAAGAGGCAGATACGACTGGGTTCTACCGCTTTACAAGACTATTGTTAAACTT TCGGAGGGATTGCGAGAGTCTTGGGTTGTCGGAATTCCCAACAGGGGACAGATTGCAATG GCATGGGAATTCCCCATACACTCCAGACTGGTCTAAAAAGAGCCGCTTTGTAGCATTCAC ATTAGTTGATTCTAGTTACAAGGAGCTTTATATTGCTTTCAATGCTGGTCATTTGGCCAA AATAGTGGCATTGCCTAAAAGACAGGGTTTCAAATGGCAGCCTTTGGTAGACACTAGCAA GTGTTGTCCTTATGATTTCCTATCAGAAGACCTGCCAGACAAGGATATAGCAATTGCTCA GTATGCCCACTTTGTGAAAAGCAATATCTATCGA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P45178 |
| Definition |
sp|P45178|GLGX_HAEIN Glycogen operon protein glgX homolog OS=Haemophilus influenzae |
| Align length |
143 |
| Score (bit) |
68.6 |
| E-value |
2.0e-11 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914827|Adiantum capillus-veneris mRNA, clone: YMU001_000063_C12. (574 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P45178|GLGX_HAEIN Glycogen operon protein glgX homolog OS=Hae... 69 2e-11 sp|Q8ZLG6|GLGX_SALTY Glycogen debranching enzyme OS=Salmonella t... 65 2e-10 sp|Q8Z234|GLGX_SALTI Glycogen debranching enzyme OS=Salmonella t... 65 2e-10 sp|A9MTV3|GLGX_SALPB Glycogen debranching enzyme OS=Salmonella p... 65 2e-10 sp|Q5PM07|GLGX_SALPA Glycogen debranching enzyme OS=Salmonella p... 65 2e-10 sp|Q57IT9|GLGX_SALCH Glycogen debranching enzyme OS=Salmonella c... 65 2e-10 sp|P0A4Y4|GLGX_MYCTU Glycogen operon protein glgX homolog OS=Myc... 65 2e-10 sp|P0A4Y5|GLGX_MYCBO Glycogen operon protein glgX homolog OS=Myc... 65 2e-10 sp|Q83J89|GLGX_SHIFL Glycogen debranching enzyme OS=Shigella fle... 65 3e-10 sp|Q0SZN3|GLGX_SHIF8 Glycogen debranching enzyme OS=Shigella fle... 65 3e-10 sp|Q3YW94|GLGX_SHISS Glycogen debranching enzyme OS=Shigella son... 62 2e-09 sp|Q32AV4|GLGX_SHIDS Glycogen debranching enzyme OS=Shigella dys... 62 2e-09 sp|Q31VJ2|GLGX_SHIBS Glycogen debranching enzyme OS=Shigella boy... 62 2e-09 sp|Q1R5J5|GLGX_ECOUT Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|P15067|GLGX_ECOLI Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|B1IP33|GLGX_ECOLC Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|Q8FCR8|GLGX_ECOL6 Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|Q0TC28|GLGX_ECOL5 Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|A1AGW4|GLGX_ECOK1 Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|A8A5P1|GLGX_ECOHS Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|Q8X6X8|GLGX_ECO57 Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|A7ZSW4|GLGX_ECO24 Glycogen debranching enzyme OS=Escherichia ... 62 2e-09 sp|A8AQY2|GLGX_CITK8 Glycogen debranching enzyme OS=Citrobacter ... 62 2e-09 sp|P26501|ISOA_PSEUM Isoamylase OS=Pseudomonas sp. (strain SMP1)... 60 6e-09 sp|P10342|ISOA_PSEAY Isoamylase OS=Pseudomonas amyloderamosa GN=... 60 6e-09 sp|A1JSI8|GLGX_YERE8 Glycogen debranching enzyme OS=Yersinia ent... 59 1e-08 sp|Q8KR69|GLGX_ERWCH Glycogen debranching enzyme OS=Erwinia chry... 59 2e-08 sp|Q664I3|GLGX_YERPS Glycogen debranching enzyme OS=Yersinia pse... 57 9e-08 sp|A4TQV1|GLGX_YERPP Glycogen debranching enzyme OS=Yersinia pes... 57 9e-08 sp|Q1CDL4|GLGX_YERPN Glycogen debranching enzyme OS=Yersinia pes... 57 9e-08
>sp|P45178|GLGX_HAEIN Glycogen operon protein glgX homolog OS=Haemophilus influenzae GN=glgX PE=3 SV=1 Length = 659
Score = 68.6 bits (166), Expect = 2e-11 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Frame = +2
Query: 56 LLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWDKKEADTTGFYRFTRLLL 235 LL++L ++ G PM+ GDE+ +T+ GNNN YC DN I + +W + + T+ + Sbjct: 503 LLMSLLLANGTPMLLAGDEFGNTQYGNNNAYCQDNEITWLKWANFNEE---LFELTKQTI 559
Query: 236 NFRRDCESLGLSEFPTGDRLQW---HGNSPYTPDWSKKSRFVAFTLVDSSYKELYIAFNA 406 R+ SL ++ + + +QW G DW + ++D+ + + NA Sbjct: 560 ALRKQIGSLNKDQWWSDENVQWLNIVGEPMTVEDWQNQQTKALQVVLDNRW---LLLINA 616
Query: 407 GHLAKIVALPKRQGFKWQPLVDT 475 ++ LP R KW+P + T Sbjct: 617 KAEGQMFHLPNR---KWKPQIGT 636
>sp|Q8ZLG6|GLGX_SALTY Glycogen debranching enzyme OS=Salmonella typhimurium GN=glgX PE=3 SV=1 Length = 658
Score = 65.1 bits (157), Expect = 2e-10 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Frame = +2
Query: 26 LDLRQRQ---MRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWDKKEA 196 LDL +R+ + LL L +SQG PM+ GDE+ H++ GNNN YC DN + + W + Sbjct: 486 LDLMERRRDSIHALLATLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWQQA-- 543
Query: 197 DTTGFYRFTRLLLNFRRDCESL-GLSEFPTGD-RLQWHGNS--PYTPD-WSKKSRFVAFT 361 G FT L+ R+ +L G S + GD ++W + P + D W + + Sbjct: 544 -NRGLTTFTAALIRLRQQIPALTGNSWWEEGDGNVRWLNKNAQPLSADEWQNGPKLMQIL 602
Query: 362 LVDSSYKELYIAFNAGHLAKIVALPK 439 L D IA NA + LP+ Sbjct: 603 LSD----RFLIAINATLEVTDIVLPE 624
>sp|Q8Z234|GLGX_SALTI Glycogen debranching enzyme OS=Salmonella typhi GN=glgX PE=3 SV=1 Length = 654
Score = 65.1 bits (157), Expect = 2e-10 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Frame = +2
Query: 26 LDLRQRQ---MRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWDKKEA 196 LDL +R+ + LL L +SQG PM+ GDE+ H++ GNNN YC DN + + W + Sbjct: 486 LDLMERRRDSIHALLATLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWQQA-- 543
Query: 197 DTTGFYRFTRLLLNFRRDCESL-GLSEFPTGD-RLQWHGNS--PYTPD-WSKKSRFVAFT 361 G FT L+ R+ +L G S + GD ++W + P + D W + + Sbjct: 544 -NRGLTTFTAALIRLRQQIPALTGNSWWEEGDGNVRWLNKNAQPLSADEWQNGPKLMQIL 602
Query: 362 LVDSSYKELYIAFNAGHLAKIVALPK 439 L D IA NA + LP+ Sbjct: 603 LSD----RFLIAINATLEVTDIVLPE 624
>sp|A9MTV3|GLGX_SALPB Glycogen debranching enzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glgX PE=3 SV=1 Length = 658
Score = 65.1 bits (157), Expect = 2e-10 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Frame = +2
Query: 26 LDLRQRQ---MRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWDKKEA 196 LDL +R+ + LL L +SQG PM+ GDE+ H++ GNNN YC DN + + W + Sbjct: 486 LDLMERRRDSIHALLATLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWQQA-- 543
Query: 197 DTTGFYRFTRLLLNFRRDCESL-GLSEFPTGD-RLQWHGNS--PYTPD-WSKKSRFVAFT 361 G FT L+ R+ +L G S + GD ++W + P + D W + + Sbjct: 544 -NRGLTTFTAALIRLRQQIPALTGNSWWEEGDGNVRWLNKNAQPLSADEWQNGPKLMQIL 602
Query: 362 LVDSSYKELYIAFNAGHLAKIVALPK 439 L D IA NA + LP+ Sbjct: 603 LSD----RFLIAINATLEVTDIVLPE 624
>sp|Q5PM07|GLGX_SALPA Glycogen debranching enzyme OS=Salmonella paratyphi A GN=glgX PE=3 SV=1 Length = 658
Score = 65.1 bits (157), Expect = 2e-10 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Frame = +2
Query: 26 LDLRQRQ---MRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWDKKEA 196 LDL +R+ + LL L +SQG PM+ GDE+ H++ GNNN YC DN + + W + Sbjct: 486 LDLMERRRDSIHALLATLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWQQA-- 543
Query: 197 DTTGFYRFTRLLLNFRRDCESL-GLSEFPTGD-RLQWHGNS--PYTPD-WSKKSRFVAFT 361 G FT L+ R+ +L G S + GD ++W + P + D W + + Sbjct: 544 -NRGLTTFTAALIRLRQQIPALTGNSWWEEGDGNVRWLNKNAQPLSADEWQNGPKLMQIL 602
Query: 362 LVDSSYKELYIAFNAGHLAKIVALPK 439 L D IA NA + LP+ Sbjct: 603 LSD----RFLIAINATLEVTDIVLPE 624
>sp|Q57IT9|GLGX_SALCH Glycogen debranching enzyme OS=Salmonella choleraesuis GN=glgX PE=3 SV=1 Length = 658
Score = 65.1 bits (157), Expect = 2e-10 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Frame = +2
Query: 26 LDLRQRQ---MRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWDKKEA 196 LDL +R+ + LL L +SQG PM+ GDE+ H++ GNNN YC DN + + W + Sbjct: 486 LDLMERRRDSIHALLATLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWQQA-- 543
Query: 197 DTTGFYRFTRLLLNFRRDCESL-GLSEFPTGD-RLQWHGNS--PYTPD-WSKKSRFVAFT 361 G FT L+ R+ +L G S + GD ++W + P + D W + + Sbjct: 544 -NRGLTTFTAALIRLRQQIPALTGNSWWEEGDGNVRWLNKNAQPLSADEWQNGPKLMQIL 602
Query: 362 LVDSSYKELYIAFNAGHLAKIVALPK 439 L D IA NA + LP+ Sbjct: 603 LSD----RFLIAINATLEVTDIVLPE 624
>sp|P0A4Y4|GLGX_MYCTU Glycogen operon protein glgX homolog OS=Mycobacterium tuberculosis GN=glgX PE=3 SV=1 Length = 721
Score = 65.1 bits (157), Expect = 2e-10 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Frame = +2
Query: 23 VLDLRQRQMRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWD--KKEA 196 +L LR RQMRN+ L VSQG PM+ GDE T+ GNNN YC D+ +++ W K A Sbjct: 515 ILALRARQMRNMWATLMVSQGTPMIAHGDEIGRTQYGNNNVYCQDSELSWMDWSLVDKNA 574
Query: 197 DTTGFYR 217 D F R Sbjct: 575 DLLAFAR 581
>sp|P0A4Y5|GLGX_MYCBO Glycogen operon protein glgX homolog OS=Mycobacterium bovis GN=glgX PE=3 SV=1 Length = 721
Score = 65.1 bits (157), Expect = 2e-10 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Frame = +2
Query: 23 VLDLRQRQMRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWD--KKEA 196 +L LR RQMRN+ L VSQG PM+ GDE T+ GNNN YC D+ +++ W K A Sbjct: 515 ILALRARQMRNMWATLMVSQGTPMIAHGDEIGRTQYGNNNVYCQDSELSWMDWSLVDKNA 574
Query: 197 DTTGFYR 217 D F R Sbjct: 575 DLLAFAR 581
>sp|Q83J89|GLGX_SHIFL Glycogen debranching enzyme OS=Shigella flexneri GN=glgX PE=3 SV=1 Length = 657
Score = 64.7 bits (156), Expect = 3e-10 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%) Frame = +2
Query: 23 VLDLRQRQMRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWDKKEADT 202 +++ R+ + LL L +SQG PM+ GDE+ H++ GNNN YC DN +N+ W + + Sbjct: 488 LVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLNWLDWSQA---S 544
Query: 203 TGFYRFTRLLLNFRRDCESLGLSE-FPTGD-RLQW---HGNSPYTPDWSKKSRFVAFTLV 367 +G FT L++ R+ +L + + GD ++W + T +W + + L Sbjct: 545 SGLTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLS 604
Query: 368 DSSYKELYIAFNAGHLAKIVALP 436 D IA NA + LP Sbjct: 605 D----RFLIAINATLEVTEIVLP 623
>sp|Q0SZN3|GLGX_SHIF8 Glycogen debranching enzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=glgX PE=3 SV=1 Length = 657
Score = 64.7 bits (156), Expect = 3e-10 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%) Frame = +2
Query: 23 VLDLRQRQMRNLLLALCVSQGVPMMTMGDEYAHTKGGNNNTYCHDNYINYFRWDKKEADT 202 +++ R+ + LL L +SQG PM+ GDE+ H++ GNNN YC DN +N+ W + + Sbjct: 488 LVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLNWLDWSQA---S 544
Query: 203 TGFYRFTRLLLNFRRDCESLGLSE-FPTGD-RLQW---HGNSPYTPDWSKKSRFVAFTLV 367 +G FT L++ R+ +L + + GD ++W + T +W + + L Sbjct: 545 SGLTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLS 604
Query: 368 DSSYKELYIAFNAGHLAKIVALP 436 D IA NA + LP Sbjct: 605 D----RFLIAINATLEVTEIVLP 623
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A4PIS8 |
| Definition |
tr|A4PIS8|A4PIS8_PHAVU Isoamylase-type starch-debranching enzyme 1 OS=Phaseolus vulgaris |
| Align length |
190 |
| Score (bit) |
274.0 |
| E-value |
2.0e-72 |
| Report |
 |