BP914834 |
Clone id |
YMU001_000063_D07 |
Library |
YMU01 |
Length |
528 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000063_D07. |
Accession |
BP914834 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTCCCACAACTTGTGGCTCAAATCCCATGTCGATCATTCGATCAGCTTCATCCAGAACAA CATAATTGCATTGATTTAGCACTGCATATCTTCTCTCAAGGCAATCAAGCAAGCGTCCTG GTGTTGCTATGACAATTTCACACCCCTGCCGAAGTTTGAAGCCCTGCTCTTCAATTGATT GTCCTCCAACCACAGAAACAACTCGAATATCCAGGTAGTGCGCAAATTTCACAGTTTCTT CTTCAATCTGTTGAGCCAACTCCCTTGTAGGAGCCATGACAACTGCGTATGGTCCTTCTG CCTCGTTCTCCTCCGTCATTGGTGGCAATTTGGATATATATGTCAACATGGGCAACACAA AAGCAGCGGTCTTACCAGACCCTGTCTCTGCAATACCAATCACATCTCTTTGTTGAAGTC CCAGTGGGATTGCAGCCATCTGAATGGGAGACGGCCTCTTGTAGCCAGCTTTATAAACTG CTTTAAGTAACTCAGAACTAAGAGCACCTTCTTCCCAGTTCCGCATTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P93008 |
Definition |
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana |
Align length |
175 |
Score (bit) |
315.0 |
E-value |
1.0e-85 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SGH2 |
Definition |
tr|A9SGH2|A9SGH2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
175 |
Score (bit) |
327.0 |
E-value |
3.0e-88 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914834|Adiantum capillus-veneris mRNA, clone: YMU001_000063_D07. (528 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SGH2|A9SGH2_PHYPA Predicted protein OS=Physcomitrella paten... 327 3e-88 tr|A7P7U2|A7P7U2_VITVI Chromosome chr3 scaffold_8, whole genome ... 317 2e-85 tr|A7Q4K4|A7Q4K4_VITVI Chromosome chr9 scaffold_49, whole genome... 315 9e-85 tr|B7EG14|B7EG14_ORYSJ cDNA clone:J023008E04, full insert sequen... 313 4e-84 tr|B6UFH0|B6UFH0_MAIZE ATP-dependent RNA helicase DDX23 OS=Zea m... 313 4e-84 tr|A2XL76|A2XL76_ORYSI Putative uncharacterized protein OS=Oryza... 313 4e-84 tr|B6SW59|B6SW59_MAIZE ATP-dependent RNA helicase DDX23 OS=Zea m... 312 8e-84 tr|A8IWA5|A8IWA5_CHLRE Pre-mRNA-splicing ATP-dependent RNA helic... 292 6e-78 tr|A9RII2|A9RII2_PHYPA Predicted protein (Fragment) OS=Physcomit... 288 9e-77 tr|A5BA90|A5BA90_VITVI Putative uncharacterized protein OS=Vitis... 272 9e-72 tr|A4S3S5|A4S3S5_OSTLU Predicted protein OS=Ostreococcus lucimar... 256 4e-67 tr|Q00ZY0|Q00ZY0_OSTTA ATP-dependent RNA helicase (ISS) OS=Ostre... 253 4e-66 tr|B3L682|B3L682_PLAKH Snrnp protein, putative OS=Plasmodium kno... 241 2e-62 tr|Q8I0W7|Q8I0W7_PLAF7 Snrnp protein, putative OS=Plasmodium fal... 240 4e-62 tr|Q4Z1B8|Q4Z1B8_PLABE Snrnp protein, putative (Fragment) OS=Pla... 240 4e-62 tr|Q4Y8N2|Q4Y8N2_PLACH Snrnp protein, putative OS=Plasmodium cha... 240 4e-62 tr|Q7RHD8|Q7RHD8_PLAYO U5 snRNP 100 kD protein OS=Plasmodium yoe... 239 8e-62 tr|A5K9H3|A5K9H3_PLAVI Pre-mRNA splicing factor RNA helicase PRP... 238 2e-61 tr|B6KTP6|B6KTP6_TOXGO DEAD-box ATP-dependent RNA helicase, puta... 236 7e-61 tr|A7ATM2|A7ATM2_BABBO DEAD box RNA helicase, putative OS=Babesi... 236 7e-61 tr|Q6P9Z2|Q6P9Z2_DANRE DEAD (Asp-Glu-Ala-Asp) box polypeptide 23... 235 9e-61 tr|A9V7D0|A9V7D0_MONBE Predicted protein OS=Monosiga brevicollis... 235 9e-61 tr|A8PF59|A8PF59_BRUMA CG10333-PA, putative OS=Brugia malayi GN=... 235 9e-61 tr|Q29MP0|Q29MP0_DROPS GA10248 OS=Drosophila pseudoobscura pseud... 235 1e-60 tr|B4G8Z3|B4G8Z3_DROPE GL19380 (Fragment) OS=Drosophila persimil... 235 1e-60 tr|Q4UA43|Q4UA43_THEAN DEAD-family helicase, putative OS=Theiler... 234 2e-60 tr|Q4N2T1|Q4N2T1_THEPA Small nuclear ribonucleoprotein, putative... 234 2e-60 tr|Q9VJ74|Q9VJ74_DROME CG10333 OS=Drosophila melanogaster GN=CG1... 234 2e-60 tr|Q95SF2|Q95SF2_DROME GM01081p OS=Drosophila melanogaster GN=CG... 234 2e-60 tr|B4Q8V5|B4Q8V5_DROSI GD24145 OS=Drosophila simulans GN=GD24145... 234 2e-60
>tr|A9SGH2|A9SGH2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_212087 PE=3 SV=1 Length = 535
Score = 327 bits (837), Expect = 3e-88 Identities = 162/175 (92%), Positives = 169/175 (96%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MRNW EGALS ELLKAV K GY +PSPIQMAAIP+GLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 113 MRNWAEGALSPELLKAVQKVGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPM 172
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 LTYISKLPPMTEE EAEGPYAVVMAPTRELAQQIE+ETVKFAH+LDIRVVS+VGGQSIEE Sbjct: 173 LTYISKLPPMTEEIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLDIRVVSIVGGQSIEE 232
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 2 QGFKLRQGCE+VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV+G Sbjct: 233 QGFKLRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMG 287
>tr|A7P7U2|A7P7U2_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035915001 PE=3 SV=1 Length = 406
Score = 317 bits (813), Expect = 2e-85 Identities = 156/174 (89%), Positives = 168/174 (96%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MR+W E LS+ELLKAV +AGYK PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 1 MRSWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 60
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 LTYIS+LPPM+EENEAEGPYAVVMAPTRELAQQIE+ETVKFAHYL I+VVS+VGGQSIEE Sbjct: 61 LTYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEE 120
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV 5 QGF++RQGCE+VIATPGRL+DCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV Sbjct: 121 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV 174
>tr|A7Q4K4|A7Q4K4_VITVI Chromosome chr9 scaffold_49, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029727001 PE=3 SV=1 Length = 406
Score = 315 bits (807), Expect = 9e-85 Identities = 155/174 (89%), Positives = 167/174 (95%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MR+W E LS ELLKAV +AGYK PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 1 MRSWVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 60
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 LTYIS+LPP++EENEAEGPYAVVMAPTRELAQQIE+ETVKFAHYL I+VVS+VGGQSIEE Sbjct: 61 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEE 120
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV 5 QGF++RQGCE+VIATPGRL+DCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV Sbjct: 121 QGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVV 174
>tr|B7EG14|B7EG14_ORYSJ cDNA clone:J023008E04, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 736
Score = 313 bits (801), Expect = 4e-84 Identities = 154/175 (88%), Positives = 166/175 (94%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MR W E L +ELL+AV KAGYK PSPIQMA+IPLGLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 314 MRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPM 373
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 L+YI++LPP++EENEAEGPYAVVMAPTRELAQQIEEETVKFA YL I+VVS+VGGQSIEE Sbjct: 374 LSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEE 433
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 2 QGFK+RQGCE+VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG Sbjct: 434 QGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 488
>tr|B6UFH0|B6UFH0_MAIZE ATP-dependent RNA helicase DDX23 OS=Zea mays PE=2 SV=1 Length = 758
Score = 313 bits (801), Expect = 4e-84 Identities = 154/175 (88%), Positives = 167/175 (95%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MR W E L +ELL+A+ KAGY++PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 336 MRKWSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 395
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 L+YI++LPP++EENEAEGPYAVVMAPTRELAQQIEEETVKFA YL I+VVS+VGGQSIEE Sbjct: 396 LSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEE 455
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 2 QGFK+RQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG Sbjct: 456 QGFKIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 510
>tr|A2XL76|A2XL76_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13221 PE=3 SV=1 Length = 736
Score = 313 bits (801), Expect = 4e-84 Identities = 154/175 (88%), Positives = 166/175 (94%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MR W E L +ELL+AV KAGYK PSPIQMA+IPLGLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 314 MRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPM 373
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 L+YI++LPP++EENEAEGPYAVVMAPTRELAQQIEEETVKFA YL I+VVS+VGGQSIEE Sbjct: 374 LSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEE 433
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 2 QGFK+RQGCE+VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG Sbjct: 434 QGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 488
>tr|B6SW59|B6SW59_MAIZE ATP-dependent RNA helicase DDX23 OS=Zea mays PE=2 SV=1 Length = 736
Score = 312 bits (799), Expect = 8e-84 Identities = 153/175 (87%), Positives = 167/175 (95%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MR W E L +ELL+A+ KAGY++PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 314 MRKWSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 373
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 L+YI++LPP++EENEAEGPYAVVMAPTRELAQQIEEETVKFA YL ++VVS+VGGQSIEE Sbjct: 374 LSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEE 433
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 2 QGFK+RQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG Sbjct: 434 QGFKIRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 488
>tr|A8IWA5|A8IWA5_CHLRE Pre-mRNA-splicing ATP-dependent RNA helicase OS=Chlamydomonas reinhardtii GN=PRP28 PE=3 SV=1 Length = 571
Score = 292 bits (748), Expect = 6e-78 Identities = 144/175 (82%), Positives = 156/175 (89%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 +R WEE L S LLKA+ K GYK+PSPIQMAAIPLGL+QRDVIGIAETGSGKTAAFVLPM Sbjct: 151 IRKWEESGLPSLLLKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPM 210
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 L YI + PPM EENEA+GPYAVV+APTRELAQQIEEET K AHY RV SVVGGQSIEE Sbjct: 211 LAYIMRQPPMNEENEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEE 270
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 2 QG KLR+GCEIVIATPGRLLDC++R YAVLNQCNYVVLDEADRMID+GFEPQV+G Sbjct: 271 QGTKLRKGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIG 325
>tr|A9RII2|A9RII2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_114798 PE=3 SV=1 Length = 454
Score = 288 bits (738), Expect = 9e-77 Identities = 148/177 (83%), Positives = 157/177 (88%), Gaps = 2/177 (1%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MRNW E GY +PSPIQMAAIP+GLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 211 MRNWAE-------------VGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPM 257
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 LTYISKLPPMT++ EAEGPYAVVMAPTRELAQQIE+ETVKFAH+LDIRVVS+VGGQSIEE Sbjct: 258 LTYISKLPPMTDDIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLDIRVVSIVGGQSIEE 317
Query: 166 QGFKLRQ--GCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 2 QGFKLRQ GCEIVIA PGRLLDCLERRYAVLNQCNYVVLDEADRMID+GFEPQV+G Sbjct: 318 QGFKLRQAGGCEIVIAFPGRLLDCLERRYAVLNQCNYVVLDEADRMIDLGFEPQVMG 374
>tr|A5BA90|A5BA90_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005473 PE=3 SV=1 Length = 661
Score = 272 bits (695), Expect = 9e-72 Identities = 141/175 (80%), Positives = 150/175 (85%) Frame = -3
Query: 526 MRNWEEGALSSELLKAVYKAGYKRPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 347 MR+W E LS ELLKAV +AGYK PSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM Sbjct: 258 MRSWVESKLSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 317
Query: 346 LTYISKLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIRVVSVVGGQSIEE 167 LTYIS+LPP++EENEAEGPYAVVMAPTRELAQQIE+ETVKFAHYL I+VVS+V Sbjct: 318 LTYISRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIV------- 370
Query: 166 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 2 VIATPGRL+DCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG Sbjct: 371 -----------VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVG 414
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