| BP914844 |
| Clone id |
YMU001_000063_E05 |
| Library |
YMU01 |
| Length |
433 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000063_E05. |
| Accession |
BP914844 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
GAATTCGCGGCTTTTAGATCCAATTTCTGTGTGTTTTCTTTGAAGAGTATGTTGTTTTTC
ATTCCCATCTGTGTGCCAAGGCTTCAGTTGAAACGGATACACAATTTTTATCTGAATACC
TTCTCTTAACCATCGTGGAGGTAACTCATCTTGTGAAAAGTCTTCGCCATCAAACGTACA
ATTGATATGAATTTCTTTCTTCCATCCCGTCCAATCCTTATTCCATTCGGAATTTTGACG
GAGTAAAATACGTCCGATATTTTTCAAGACTATAAGTACTGGTAGTTTAATAAACTTTCG
AAATCTGGATTGAAAAACTAGCATATATCCCCTTCCATTATGGATAGGGCCTATGTCTGA
TCTAGCTGCTATAGCTGAACGAGTAAGCTTCGATTCACCGATTAAACTCCTTTTCGCTGA
TAAAGAGATATCT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q85FG7 |
| Definition |
sp|Q85FG7|YCF1_ADICA Putative membrane protein ycf1 OS=Adiantum capillus-veneris |
| Align length |
143 |
| Score (bit) |
295.0 |
| E-value |
4.0e-80 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B0YPS3 |
| Definition |
tr|B0YPS3|B0YPS3_ANEMR Hypothetical chloroplast RF1 OS=Aneura mirabilis |
| Align length |
138 |
| Score (bit) |
134.0 |
| E-value |
2.0e-30 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914844|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_E05.
(433 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B0YPS3|B0YPS3_ANEMR Hypothetical chloroplast RF1 OS=Aneura mi... 134 2e-30
tr|A6H5Q0|A6H5Q0_CYCTA Putative uncharacterized protein ycf1 OS=... 133 4e-30
tr|B2LMP0|B2LMP0_GUIAB Hypothetical chloroplast RF19 OS=Guizotia... 117 4e-25
tr|A7QCV1|A7QCV1_VITVI Chromosome undetermined scaffold_79, whol... 113 4e-24
tr|A7Q483|A7Q483_VITVI Chromosome chr9 scaffold_49, whole genome... 113 4e-24
tr|B1A992|B1A992_CARPA Hypothetical chloroplast RF1 OS=Carica pa... 111 2e-23
tr|B1NWK7|B1NWK7_MANES Hypothetical chloroplast RF1 OS=Manihot e... 111 2e-23
tr|A7R927|A7R927_VITVI Chromosome undetermined scaffold_3241, wh... 109 6e-23
tr|B7ZI68|B7ZI68_GNEPA Putative uncharacterized protein ycf1 OS=... 106 5e-22
tr|A2Q584|A2Q584_MEDTR Hypothetical 214.8 kDa protein ycf1, rela... 106 7e-22
tr|B7ZIK4|B7ZIK4_EPHEU Putative uncharacterized protein ycf1 OS=... 104 2e-21
tr|B5LMR8|B5LMR8_CICAR Hypothetical chloroplast RF19 OS=Cicer ar... 104 2e-21
tr|B7ZIL6|B7ZIL6_KETDA Putative uncharacterized protein ycf1 OS=... 102 7e-21
tr|B7ZI01|B7ZI01_WELMI Putative uncharacterized protein ycf1 OS=... 91 3e-17
tr|B2Y207|B2Y207_WELMI Hypothetical chloroplast RF1 OS=Welwitsch... 91 3e-17
tr|B1NTT1|B1NTT1_TRACE Hypothetical chloroplast RF19 OS=Tracheli... 89 1e-16
tr|B1VKJ7|B1VKJ7_CRYJA Hypothetical chloroplast RF1 OS=Cryptomer... 88 2e-16
tr|B2XWI7|B2XWI7_FAGEA Hypothetical chloroplast RF1 OS=Fagopyrum... 88 2e-16
tr|B0Z5A1|B0Z5A1_OENGL Ycf1 protein OS=Oenothera glazioviana GN=... 74 5e-12
tr|B0Z517|B0Z517_OENBI Ycf1 protein OS=Oenothera biennis GN=ycf1... 74 5e-12
tr|B0Z5I5|B0Z5I5_OENPA Ycf1 protein OS=Oenothera parviflora GN=y... 72 1e-11
tr|B0Z4T3|B0Z4T3_OENAR Ycf1 protein OS=Oenothera argillicola GN=... 70 7e-11
tr|Q85WT8|Q85WT8_PINKO ORF56g OS=Pinus koraiensis PE=4 SV=1 35 2.4
tr|Q9HJP8|Q9HJP8_THEAC Putative uncharacterized protein Ta0919 O... 33 5.5
>tr|B0YPS3|B0YPS3_ANEMR Hypothetical chloroplast RF1 OS=Aneura
mirabilis GN=ycf1 PE=4 SV=1
Length = 1091
Score = 134 bits (338), Expect = 2e-30
Identities = 66/138 (47%), Positives = 88/138 (63%), Gaps = 8/138 (5%)
Frame = -2
Query: 423 LSAKRSLIGESKLTRSAIAARSDIGPIHNGRGYMLVFQSRFRKFIKLPVLIVLKNIGRIL 244
+S K + ++ R A A R D GR ++L+ QS RK++ LP +I+LKNI R L
Sbjct: 699 VSKKNTSCDKTGTDRLATANRWDFPLAQWGRSWLLMIQSHLRKYLALPAVIILKNISRFL 758
Query: 243 LRQNSEWNKDWTGWKKEIHINCTFDGEDFSQDELPPRWLREGIQIKIVYPFQLKPWHT-- 70
L QN EWNKDW W +EIHI CT+DG + S+ ELP +WLR+G+Q+KI+ PF LKPWH
Sbjct: 759 LFQNPEWNKDWFEWNREIHIRCTYDGTEISEKELPEQWLRDGLQVKIINPFHLKPWHKSE 818
Query: 69 --DG----NEKQHTLQRK 34
DG NE+ T +RK
Sbjct: 819 FGDGCFGKNEEDFTRKRK 836
>tr|A6H5Q0|A6H5Q0_CYCTA Putative uncharacterized protein ycf1 OS=Cycas
taitungensis GN=ycf1 PE=4 SV=1
Length = 1775
Score = 133 bits (335), Expect = 4e-30
Identities = 67/125 (53%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
Frame = -2
Query: 423 LSAKRSLIGE-SKLTRSAIAARSDIGPIHNGRGYMLVFQSRFRKFIKLPVLIVLKNIGRI 247
L + R+ GE SK+ R +IA + D RG++LV QS RK+I LP LI+ KNIGR+
Sbjct: 784 LKSGRTYSGERSKVDRLSIADKLDFSLNQKIRGFILVTQSILRKYIILPSLIIAKNIGRM 843
Query: 246 LLRQNSEWNKDWTGWKKEIHINCTFDGEDFSQDELPPRWLREGIQIKIVYPFQLKPWHTD 67
LL Q EW++DW W +EIHI CT+DG +FS+ E P RWLR+GIQIKI++PF+L+PWH
Sbjct: 844 LLFQVPEWDEDWGEWSREIHIKCTYDGIEFSETEFPDRWLRDGIQIKILFPFRLRPWH-- 901
Query: 66 GNEKQ 52
G+E Q
Sbjct: 902 GSELQ 906
>tr|B2LMP0|B2LMP0_GUIAB Hypothetical chloroplast RF19 OS=Guizotia
abyssinica GN=ycf1 PE=4 SV=1
Length = 1679
Score = 117 bits (292), Expect = 4e-25
Identities = 53/101 (52%), Positives = 71/101 (70%)
Frame = -2
Query: 375 AIAARSDIGPIHNGRGYMLVFQSRFRKFIKLPVLIVLKNIGRILLRQNSEWNKDWTGWKK 196
AI +I R +L+ QS FR++IKLP+LI+ KNIGRILLRQ+ EW +D+ W +
Sbjct: 703 AIEFWENIPYAQKSRSVLLLAQSIFRRYIKLPLLIIAKNIGRILLRQSPEWYEDFQDWNR 762
Query: 195 EIHINCTFDGEDFSQDELPPRWLREGIQIKIVYPFQLKPWH 73
EI++ C+++G FS+ E P WL EG QIKI+YPF LKPWH
Sbjct: 763 EIYLKCSYNGLQFSKTEFPENWLIEGFQIKILYPFHLKPWH 803
>tr|A7QCV1|A7QCV1_VITVI Chromosome undetermined scaffold_79, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00035572001 PE=4 SV=1
Length = 485
Score = 113 bits (283), Expect = 4e-24
Identities = 49/87 (56%), Positives = 66/87 (75%)
Frame = -2
Query: 333 RGYMLVFQSRFRKFIKLPVLIVLKNIGRILLRQNSEWNKDWTGWKKEIHINCTFDGEDFS 154
RG +L+ QS FRK+I LP LI+ KNIGR+LL Q+ EW++D W +E+H+ CT++G S
Sbjct: 156 RGSLLLTQSIFRKYIILPSLIIAKNIGRMLLFQSPEWSEDLKDWNREMHVKCTYNGVQLS 215
Query: 153 QDELPPRWLREGIQIKIVYPFQLKPWH 73
+ E P WLR+GIQIKI++PF LKPWH
Sbjct: 216 ETEFPQNWLRDGIQIKILFPFCLKPWH 242
>tr|A7Q483|A7Q483_VITVI Chromosome chr9 scaffold_49, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029581001
PE=4 SV=1
Length = 491
Score = 113 bits (283), Expect = 4e-24
Identities = 49/87 (56%), Positives = 66/87 (75%)
Frame = -2
Query: 333 RGYMLVFQSRFRKFIKLPVLIVLKNIGRILLRQNSEWNKDWTGWKKEIHINCTFDGEDFS 154
RG +L+ QS FRK+I LP LI+ KNIGR+LL Q+ EW++D W +E+H+ CT++G S
Sbjct: 274 RGCLLLTQSIFRKYIILPSLIIAKNIGRMLLFQSPEWSEDLKDWNREMHVKCTYNGVQLS 333
Query: 153 QDELPPRWLREGIQIKIVYPFQLKPWH 73
+ E P WLR+GIQIKI++PF LKPWH
Sbjct: 334 ETEFPQNWLRDGIQIKILFPFCLKPWH 360
>tr|B1A992|B1A992_CARPA Hypothetical chloroplast RF1 OS=Carica papaya
GN=ycf1 PE=4 SV=1
Length = 1859
Score = 111 bits (278), Expect = 2e-23
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = -2
Query: 333 RGYMLVFQSRFRKFIKLPVLIVLKNIGRILLRQNSEWNKDWTGWKKEIHINCTFDGEDFS 154
RG++LV QS RK+I LP LI++KNI R+LL Q SEW++D W +E+HI CT++G S
Sbjct: 801 RGFVLVTQSILRKYIILPSLIIVKNIARLLLFQFSEWSEDLKDWNREMHIKCTYNGVQLS 860
Query: 153 QDELPPRWLREGIQIKIVYPFQLKPWHTDGNEKQH 49
+ E P WL +GIQIKI++PF LKPWH H
Sbjct: 861 ETEFPKNWLTDGIQIKILFPFCLKPWHRSKLRSPH 895
>tr|B1NWK7|B1NWK7_MANES Hypothetical chloroplast RF1 OS=Manihot
esculenta GN=ycf1 PE=4 SV=1
Length = 1856
Score = 111 bits (277), Expect = 2e-23
Identities = 53/111 (47%), Positives = 73/111 (65%)
Frame = -2
Query: 333 RGYMLVFQSRFRKFIKLPVLIVLKNIGRILLRQNSEWNKDWTGWKKEIHINCTFDGEDFS 154
RG++LV QS FRK+I LP LI++KNI RIL + EW++D+ W +EIH+ CT++G S
Sbjct: 812 RGFILVTQSIFRKYILLPSLIIIKNIIRILFLKTPEWSEDFKDWSREIHVKCTYNGVQLS 871
Query: 153 QDELPPRWLREGIQIKIVYPFQLKPWHTDGNEKQHTLQRKHTEIGSKSREF 1
+ E P WL EGIQIKI++PF+LKP H + H Q K + K+ F
Sbjct: 872 EKEFPKNWLIEGIQIKILFPFRLKPSHKSKLKFSHKDQTKMKKKAQKNDYF 922
>tr|A7R927|A7R927_VITVI Chromosome undetermined scaffold_3241, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00012685001 PE=4 SV=1
Length = 601
Score = 109 bits (273), Expect = 6e-23
Identities = 48/87 (55%), Positives = 65/87 (74%)
Frame = -2
Query: 333 RGYMLVFQSRFRKFIKLPVLIVLKNIGRILLRQNSEWNKDWTGWKKEIHINCTFDGEDFS 154
RG +L+ QS FRK+I LP LI+ KNIGR+LL Q+ EW++D W +E+H+ CT++G S
Sbjct: 165 RGCLLLTQSIFRKYIILPSLIIAKNIGRMLLFQSPEWSEDLKDWNREMHVKCTYNGVQLS 224
Query: 153 QDELPPRWLREGIQIKIVYPFQLKPWH 73
+ E P WLR+GIQIKI++ F LKPWH
Sbjct: 225 ETEFPQNWLRDGIQIKILFLFCLKPWH 251
>tr|B7ZI68|B7ZI68_GNEPA Putative uncharacterized protein ycf1
OS=Gnetum parvifolium GN=ycf1 PE=4 SV=1
Length = 1540
Score = 106 bits (265), Expect = 5e-22
Identities = 50/98 (51%), Positives = 67/98 (68%)
Frame = -2
Query: 366 ARSDIGPIHNGRGYMLVFQSRFRKFIKLPVLIVLKNIGRILLRQNSEWNKDWTGWKKEIH 187
A+ D H RG +L+FQ+ FR+ + LP LI +KN+GRILL Q E +DW E++
Sbjct: 1039 AKLDHHIFHKIRGPILIFQAFFRQKVVLPFLIGIKNVGRILLLQTPEIIEDWKELSAEVY 1098
Query: 186 INCTFDGEDFSQDELPPRWLREGIQIKIVYPFQLKPWH 73
INCTFDG +FS+ + P RW +G QIKI+ PF+LKPWH
Sbjct: 1099 INCTFDGVEFSEQKRPERWWEDGFQIKILNPFRLKPWH 1136
>tr|A2Q584|A2Q584_MEDTR Hypothetical 214.8 kDa protein ycf1, related
OS=Medicago truncatula GN=MtrDRAFT_AC160516g46v2 PE=4
SV=1
Length = 366
Score = 106 bits (264), Expect = 7e-22
Identities = 52/108 (48%), Positives = 71/108 (65%)
Frame = -2
Query: 333 RGYMLVFQSRFRKFIKLPVLIVLKNIGRILLRQNSEWNKDWTGWKKEIHINCTFDGEDFS 154
R ++L+ QS FRK+I LP LI+ KNI RILL QN EW++D+ W +E+HI CT+ G S
Sbjct: 252 RSFVLLIQSFFRKYILLPSLIITKNIIRILLFQNPEWSEDFRDWSREVHIKCTYQGIPVS 311
Query: 153 QDELPPRWLREGIQIKIVYPFQLKPWHTDGNEKQHTLQRKHTEIGSKS 10
ELP W EGIQI+I+ PF LK WH ++ Q T ++K + K+
Sbjct: 312 DKELPKNWFDEGIQIRILNPFVLKAWHK--SKVQSTEKKKKKDPQKKN 357
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