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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914845
Clone id YMU001_000063_E06
Library
Length 567
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATACATCGAAATAACTTTCTTAGAGATACAACTCAAGCCTTTCAGAGGCCACCAACAAA
CCACCTTGCTTCTTTAACTGCATTTGCAAACTATTCACATCAACTATACACATATGCACT
CGTGACTCTAGACTTATCACTTCTCCTTATAAAAATAAGCCCTGTACATACCCAGATTGG
GTATGGCTTGCCATAATTCTTACACTTTCAGCAAGATAAGAAATCCTGCCAATGCACGTG
AAGGATACATATCATATGCAGAACCTTTCACACCAGACAACCTCTGAATACTATGTACAG
TGCTCAATCATTCACTCTGGAAAGCCAGGTATGTCCAAAGGTTAACCTTTCTTTTCCCGG
TGCCAGTCGTAACACTCGTGCAAAACAAACTGCAAATCTTTCTTTAACCCATGTCCACCT
CCGGCGCAAATAGATTGGCCATATAACCATCGAACCCAGCCTGTCTTCCATCCAGAATAA
GAGCTTGGTTAAATGCCTGGCTTCCAAAATATGTGTCACCACTCTTTGAGCAAGCATCCA
TAACAGTTCGCCACACCACCATATCTG
■■Homology search results ■■ -
sp_hit_id Q9SVA5
Definition sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana
Align length 45
Score (bit) 35.0
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914845|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_E06.
         (567 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protei...    35   0.26 
sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protei...    34   0.58 
sp|Q9XIE2|PDR8_ARATH Pleiotropic drug resistance protein 8 OS=Ar...    32   1.7  
sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protei...    32   2.2  
sp|P75472|Y308_MYCPN Uncharacterized protein MPN_308 OS=Mycoplas...    32   2.2  
sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protei...    32   2.9  
sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protei...    32   2.9  
sp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containi...    32   2.9  
sp|Q97JE0|ARAA2_CLOAB L-arabinose isomerase 2 OS=Clostridium ace...    32   2.9  
sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protei...    31   4.9  
sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protei...    30   6.4  
sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protei...    30   6.4  
sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containi...    30   8.3  
sp|P27668|UHPB_SALTY Sensor protein uhpB OS=Salmonella typhimuri...    30   8.4  

>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein
           At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
          Length = 834

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -3

Query: 559 VVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
           +VWR+++  C+K+G+      A   A++ D + +G    ++N++A
Sbjct: 724 IVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYA 768


>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein
           At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
          Length = 595

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPE 419
           ++V+WRT++ AC+  GD+     A  Q L L+   +G    ++N++A E
Sbjct: 391 NVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASE 439


>sp|Q9XIE2|PDR8_ARATH Pleiotropic drug resistance protein 8
           OS=Arabidopsis thaliana GN=PDR8 PE=1 SV=1
          Length = 1469

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -1

Query: 561 WWCGELLWMLAQRVVTHILEARHLTKLLFWMED-RLGSMVI--WPIYLRRRWTWVKERFA 391
           +W   L +     VV  +   R + K+       +LG+MV+  W +Y ++ W W+     
Sbjct: 718 YWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGAL 777

Query: 390 VCFARVLRL 364
           +CF  +  +
Sbjct: 778 LCFTALFNI 786


>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein
           At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
          Length = 591

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAG 455
           D  +WRT++ AC   GD   G +  +  + L   +AG
Sbjct: 386 DSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAG 422


>sp|P75472|Y308_MYCPN Uncharacterized protein MPN_308 OS=Mycoplasma
           pneumoniae GN=MPN_308 PE=4 SV=1
          Length = 565

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 181 VWLAIILTLSAR*EILPMHVKDTYHMQNLSHQTTSEYYVQCSIIHS 318
           V L ++L   A    LP++V+D YH +        + YVQ  + HS
Sbjct: 516 VMLIVVLVFFAIISFLPVYVEDQYHKRKFGSLANYQQYVQQHLAHS 561


>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic OS=Arabidopsis thaliana
           GN=EMB2261 PE=2 SV=1
          Length = 850

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
           D++VWRT + AC    +T  G  A  + L LD  +      ++N++A
Sbjct: 642 DVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYA 688


>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H44 PE=2 SV=1
          Length = 630

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
           D V WRT++ AC    +      A  + + LD   AG    ++N++A
Sbjct: 426 DAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYA 472


>sp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containing
           protein At1g74400 OS=Arabidopsis thaliana GN=PCMP-E68
           PE=3 SV=1
          Length = 462

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 559 VVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
           V+WRT++ ACS  G+   G +   +   LD    G    ++N++A
Sbjct: 345 VIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYA 389


>sp|Q97JE0|ARAA2_CLOAB L-arabinose isomerase 2 OS=Clostridium
           acetobutylicum GN=araA2 PE=3 SV=1
          Length = 488

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 506 WKPGI*PSSYSGWKTGWVRWLYGQSICAGGGHGLKKDLQFVLHECYDWHR 357
           WKP   P+   G K+    W+Y     AGGGH     L+  + + YDW R
Sbjct: 426 WKPE--PNFIEGVKS----WIY-----AGGGHHTVVSLELTVEQVYDWSR 464


>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E86 PE=2 SV=1
          Length = 768

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILD 470
           D+VVW+T++ AC   G+ +   +A    L +D
Sbjct: 641 DVVVWKTLLSACKTQGNVHLAQKAAENILKID 672
tr_hit_id A7R0U6
Definition tr|A7R0U6|A7R0U6_VITVI Chromosome undetermined scaffold_324, whole genome shotgun sequence (Fragment) OS=Vitis vinifera
Align length 47
Score (bit) 36.2
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914845|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_E06.
         (567 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R0U6|A7R0U6_VITVI Chromosome undetermined scaffold_324, who...    36   1.3  
tr|A7PRP0|A7PRP0_VITVI Chromosome chr14 scaffold_27, whole genom...    36   1.3  
tr|B6WHW9|B6WHW9_9BACE Putative uncharacterized protein OS=Bacte...    36   1.7  
tr|A7M184|A7M184_BACOV Putative uncharacterized protein OS=Bacte...    36   1.7  
tr|Q6YWL6|Q6YWL6_ORYSJ Os08g0434000 protein OS=Oryza sativa subs...    35   2.9  
tr|Q6F382|Q6F382_ORYSJ Os03g0795200 protein OS=Oryza sativa subs...    35   2.9  
tr|B4F908|B4F908_MAIZE Putative uncharacterized protein OS=Zea m...    35   2.9  
tr|A7QI70|A7QI70_VITVI Chromosome chr17 scaffold_101, whole geno...    35   2.9  
tr|A5B7G0|A5B7G0_VITVI Putative uncharacterized protein OS=Vitis...    35   2.9  
tr|A3BTF4|A3BTF4_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.9  
tr|A3ANL0|A3ANL0_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.9  
tr|A2XMV7|A2XMV7_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.9  
tr|A7QEK5|A7QEK5_VITVI Chromosome chr17 scaffold_85, whole genom...    35   3.7  
tr|A7Q1A2|A7Q1A2_VITVI Chromosome chr10 scaffold_43, whole genom...    35   3.7  
tr|A5AT77|A5AT77_VITVI Putative uncharacterized protein OS=Vitis...    35   3.7  
tr|A7QUP3|A7QUP3_VITVI Chromosome chr10 scaffold_179, whole geno...    34   4.9  
tr|A7QT27|A7QT27_VITVI Chromosome undetermined scaffold_165, who...    34   4.9  
tr|A5C5V0|A5C5V0_VITVI Putative uncharacterized protein OS=Vitis...    34   4.9  
tr|A5AUW9|A5AUW9_VITVI Putative uncharacterized protein OS=Vitis...    34   4.9  
tr|O49549|O49549_ARATH Putative uncharacterized protein F7J7.10 ...    34   6.4  
tr|A7PL13|A7PL13_VITVI Chromosome chr7 scaffold_20, whole genome...    34   6.4  
tr|A5AZY0|A5AZY0_VITVI Putative uncharacterized protein OS=Vitis...    34   6.4  
tr|Q1G366|Q1G366_ARATH Putative uncharacterized protein OS=Arabi...    33   8.3  
tr|B4FZF5|B4FZF5_MAIZE Putative uncharacterized protein OS=Zea m...    33   8.3  
tr|A5AF05|A5AF05_VITVI Putative uncharacterized protein OS=Vitis...    33   8.3  
tr|A0ME49|A0ME49_ARATH Putative uncharacterized protein (Fragmen...    33   8.3  
tr|Q2SQ23|Q2SQ23_HAHCH Predicted membrane protein OS=Hahella che...    33   8.5  

>tr|A7R0U6|A7R0U6_VITVI Chromosome undetermined scaffold_324, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011626001 PE=4 SV=1
          Length = 718

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
           D+V+WRT++ AC   GD     +  N+ + L     G    ++NL+A
Sbjct: 513 DVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYA 559


>tr|A7PRP0|A7PRP0_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022577001
           PE=4 SV=1
          Length = 745

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPEVD 413
           D+  W  ++ AC K GDT  G +   + + L     GF   ++N+FA + D
Sbjct: 541 DVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGD 591


>tr|B6WHW9|B6WHW9_9BACE Putative uncharacterized protein
           OS=Bacteroides finegoldii DSM 17565 GN=BACFIN_02107 PE=4
           SV=1
          Length = 230

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -3

Query: 553 WRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANL--FAPEVDMG*RKICSLFC 380
           WR  ++A     DT F  +A  Q +++   +   D  M  +  F P +D     +C +FC
Sbjct: 54  WRIFIEAT----DTKFYEEAMLQGMVIGRSKTALDEQMKYVKRFVPRIDNW--AVCDIFC 107

Query: 379 TSVTTGTGKRKVNLWTYL 326
           + + T   K K  +W ++
Sbjct: 108 SELKTAVKKGKETVWQFI 125


>tr|A7M184|A7M184_BACOV Putative uncharacterized protein
           OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_03865 PE=4
           SV=1
          Length = 260

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -3

Query: 553 WRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYM--ANLFAPEVDMG*RKICSLFC 380
           WRT ++    S DT +  +   Q +I+   +   +  M    +F P +D     +C +FC
Sbjct: 84  WRTFVE----STDTIYYEETMLQGMIIGLAKMELEEQMKYVTMFIPRIDNW--AVCDIFC 137

Query: 379 TSVTTGTGKRKVNLWTYL 326
           + + T   K K N+W ++
Sbjct: 138 SELKTSVKKGKENVWQFI 155


>tr|Q6YWL6|Q6YWL6_ORYSJ Os08g0434000 protein OS=Oryza sativa subsp.
           japonica GN=P0413H11.3 PE=4 SV=1
          Length = 601

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPEVDMG 407
           D  +WRT++ AC   G    G +  N  + L  +QAG    + N +A   D G
Sbjct: 397 DATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWG 449


>tr|Q6F382|Q6F382_ORYSJ Os03g0795200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0021G19.15 PE=4 SV=1
          Length = 611

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 559 VVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
           ++WRT++ AC+  GD   G + F + L LD    G     +NL A
Sbjct: 408 ILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCA 452


>tr|B4F908|B4F908_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 606

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 559 VVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
           ++WRT++ AC   GD   G + F + L LD    G     +NL A
Sbjct: 403 ILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCA 447


>tr|A7QI70|A7QI70_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000117001
           PE=4 SV=1
          Length = 592

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPEVD 413
           DM+VWRT++ AC   G+    +Q  N    L  +++     ++NLFA   +
Sbjct: 513 DMIVWRTLLGACHTQGNISLANQVMNYLCELGPKKSEDYVLLSNLFASNAE 563


>tr|A5B7G0|A5B7G0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011618 PE=4 SV=1
          Length = 529

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPEVD 413
           DM+VWRT++ AC   G+    +Q  N    L  +++     ++NLFA   +
Sbjct: 450 DMIVWRTLLGACXXQGNISLANQVMNXLCELGPKKSEDYVLLSNLFASNAE 500


>tr|A3BTF4|A3BTF4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_026326 PE=4 SV=1
          Length = 416

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 565 DMVVWRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPEVDMG 407
           D  +WRT++ AC   G    G +  N  + L  +QAG    + N +A   D G
Sbjct: 212 DATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWG 264