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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914849
Clone id YMU001_000063_E10
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTACTCCTGGGATTCATTGTTGACCCTCCAAGACGACGACCTCCTACAATTTGTTGGCGG
CTTCTGTTGTGAAGATTTCTTAGTATCCTCATCCTTGAGGATGAAGCAGTAGGTCTTGCT
GCTGGGGACCTGATGGTTGGGAGGACTCTTTGCATCTCCCTCCTAGCGAGCCTGCATTAT
TGACGCATTCGCTACTTGAGATGCTGGCTCAACTCTTTGTTGTGTGTATCTTGCATTCTC
CTCTTCCTGATAACATCCGCGCCAAGTGTGCATCATCCAGAGCAAAATTTCCTTCATCAG
CTTCCAGACCATAATCCTCCTGTAGAAACTTTGCCAGCATTTCATCTTCTTCAATCTGCC
TAGCCCTGTTAGCAGCAGCAGACACAATTCTCTCAGCAGTTGCGCTGCTGCTTGGACACT
CCAAACTATCTACATCGATAGGCCGTTCCATTCCTCCAAATGATGACCCACTTGTACTAC
CATCTCTGACCCTGCGGGGAGGCTTATACCTGTGACGGCTTGTACCTGCATCTGCC
■■Homology search results ■■ -
sp_hit_id Q29CW2
Definition sp|Q29CW2|DAN_DROPS Protein distal antenna OS=Drosophila pseudoobscura pseudoobscura
Align length 136
Score (bit) 37.4
E-value 0.046
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914849|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_E10.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q29CW2|DAN_DROPS Protein distal antenna OS=Drosophila pseudoo...    37   0.046
sp|Q1H153|RNH2_METFK Ribonuclease HII OS=Methylobacillus flagell...    34   0.51 
sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Dro...    30   5.7  
sp|Q0KK55|VKIND_MOUSE Protein very KIND OS=Mus musculus GN=Kndc1...    30   7.4  
sp|Q8LCT3|TRXL6_ARATH Thioredoxin-like 6, chloroplastic OS=Arabi...    30   7.4  
sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12...    30   9.7  
sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=A...    30   9.7  
sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=FER1L3 PE=1 SV=1     30   9.7  
sp|Q59N20|MSS11_CANAL Transcription activator MSS11 OS=Candida a...    30   9.7  

>sp|Q29CW2|DAN_DROPS Protein distal antenna OS=Drosophila
           pseudoobscura pseudoobscura GN=dan PE=3 SV=2
          Length = 683

 Score = 37.4 bits (85), Expect = 0.046
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
 Frame = -2

Query: 529 AGTSRHRYKPPRRVRDGSTSGSSFGGMERPIDVDSLECPSSSATAERIVSAAANRARQIE 350
           A + +H+++P   V DG+    +  G    I    L   S + +   + S   N+  QIE
Sbjct: 404 ANSLQHQHQPISAVSDGTDIADTSKGPFDNILYSHLTKESETPSVRSLSSNEHNQLDQIE 463

Query: 349 EDEMLAKFLQEDYGLEADEGNFALDDAHLARMLSGRGEC------KIHTTKS*ASISS-- 194
            DE+    L  D  +E D      D +  A+ ++           + HTT+  A  S+  
Sbjct: 464 GDEVTDPDL--DAEIEGDVPGKPEDLSASAKRITPSQSPIASLVPESHTTEPCAKTSTTP 521

Query: 193 SECVNNAGSLGGRCKE 146
           S+C++  GS+GG CK+
Sbjct: 522 SDCISRPGSVGGDCKK 537


>sp|Q1H153|RNH2_METFK Ribonuclease HII OS=Methylobacillus
           flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rnhB
           PE=3 SV=1
          Length = 193

 Score = 33.9 bits (76), Expect = 0.51
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
 Frame = -2

Query: 451 MERPIDVDSLECPSSSATAERIV------------SAAANRARQIEEDEMLAKFLQEDYG 308
           M   + VD L CP  +  A+ IV            S  A  AR  E  EM A++ Q D+ 
Sbjct: 97  MPTQVLVDGLHCPGIAIPAQGIVKGDSKVQEIAAASILAKTARDHEMVEMHARYPQYDFA 156

Query: 307 LEADEGNFALDDAHLARMLSGRGECKIH 224
                       AH  R+L+  G C+IH
Sbjct: 157 KHK-----GYPTAHHLRLLAEHGACEIH 179


>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire
           OS=Drosophila melanogaster GN=hay PE=2 SV=2
          Length = 798

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
 Frame = -2

Query: 502 PPRRVRDGSTSGSSFGGMERPIDV---------DSLECPSSSATAERIVSAAANRARQIE 350
           PP++ R   + G  FG   R  D          DSL+   S          A     QI 
Sbjct: 3   PPKKSRKDRSGGDKFGKKRRAEDEAFTQLVDDNDSLDATESEGIPGAASKNAETNDEQIN 62

Query: 349 EDEMLAKFLQEDYGLEADEGN 287
            DE  AK  +    L  D GN
Sbjct: 63  TDEYGAKDYRSQMQLRPDHGN 83


>sp|Q0KK55|VKIND_MOUSE Protein very KIND OS=Mus musculus GN=Kndc1 PE=1
            SV=2
          Length = 1742

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
 Frame = -2

Query: 520  SRHRYKPPRRVRDGSTSG--SSFGGMERPIDVDSLECPSSSATAERIVSAAA----NRAR 359
            SRH  KPPR     S S    S G  E+P   D   CPSS  T+      A        R
Sbjct: 826  SRHPCKPPRGKAAASPSSPRGSDGHPEKPRPADRKLCPSSVDTSSPPKMTACPSLQEAMR 885

Query: 358  QIEEDEMLAKFLQEDYGLEA---DEGNFALDDAHLA 260
             I+E+     ++  D GLEA    E  +AL D   A
Sbjct: 886  LIQEEFAFDGYM--DNGLEALIMGEYIYALKDLTFA 919


>sp|Q8LCT3|TRXL6_ARATH Thioredoxin-like 6, chloroplastic
           OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2
          Length = 236

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
 Frame = +1

Query: 223 CVSCILLFLITSAPSVHHPEQNFLHQLPDHNPP------VETLPAFHLLQSA 360
           C SC  LF      +V HP+  FL    D N P      V  LP FH  + A
Sbjct: 135 CASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGA 186


>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c
           OS=Schizosaccharomyces pombe GN=SPCC4G3.12c PE=2 SV=1
          Length = 821

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -2

Query: 511 RYKPPRRVRDGSTSGSSFGGMERPIDVDSLECPSSS--ATAERIVSAAANRARQIEEDEM 338
           RY  P    DGS         E   D  S   P+SS    +E +V+++A+ + Q  +DE 
Sbjct: 35  RYTTPLSTEDGSREAHFAVPSENYADTPSRNTPNSSNGFPSETLVTSSAHCSTQPHKDEA 94

Query: 337 LAKFLQEDYGLEADEGNFALDDAHLAR 257
                   Y         ALDD+ LA+
Sbjct: 95  --------YSHHGYSSTMALDDSSLAQ 113


>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19
           OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
          Length = 1895

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -2

Query: 517 RHRYKPPRRVRDGST---SGSSFGGMERPIDVDSLECPSSSATAERIVSAAANRARQIEE 347
           RH ++PP + +DGST   SGSS            + C SS  TA    S  ++   +IE+
Sbjct: 520 RHNHEPPNQGKDGSTTYLSGSS----------THINCMSSELTA----SQFSSNKTKIEQ 565

Query: 346 DEMLAKFLQEDYGLEADE 293
            E  +     +Y  EA +
Sbjct: 566 QEAASLATTIEYMSEASD 583


>sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=FER1L3 PE=1 SV=1
          Length = 2061

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 273  MHTWRGCYQEEENARYTQQRVEPASQVANASIMQAR*EGDAKSPPN 136
            M  W  CY E++ AR    +VE   ++ N      R  G  +  PN
Sbjct: 1946 MKGWWPCYAEKDGARVMAGKVEMTLEILNEKEADERPAGKGRDEPN 1991


>sp|Q59N20|MSS11_CANAL Transcription activator MSS11 OS=Candida
           albicans GN=MSS11 PE=3 SV=1
          Length = 640

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = -3

Query: 249 QEEENARYTQQRVEPASQVANASIMQAR*EGDAKSPPNHQVPSSKTYCFILKDEDTKKSS 70
           Q+  N++  QQ+ +  SQ   +S  Q         PP  Q  +S T          +KSS
Sbjct: 366 QQTRNSQQQQQQQQSQSQSQQSSPFQ---------PPAQQPKNSTTTSTNTTTSRAQKSS 416

Query: 69  QQKPPTNCRRSS 34
           +++ P N RR S
Sbjct: 417 RKQQPKNSRRQS 428
tr_hit_id A5B191
Definition tr|A5B191|A5B191_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 85
Score (bit) 38.1
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914849|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_E10.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B191|A5B191_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|A9TPP1|A9TPP1_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.4  
tr|A1TN29|A1TN29_ACIAC Prophage tail length tape measure OS=Acid...    35   3.2  
tr|B4GE13|B4GE13_DROPE GL21909 OS=Drosophila persimilis GN=GL219...    35   3.2  
tr|Q1LVF9|Q1LVF9_DANRE Novel kinase domain containing protein (F...    34   5.5  
tr|Q4P860|Q4P860_USTMA Putative uncharacterized protein OS=Ustil...    34   5.5  
tr|A1TMM7|A1TMM7_ACIAC Prophage tail length tape measure OS=Acid...    33   7.2  
tr|Q7YYC2|Q7YYC2_CRYPV Splicing factor, possible OS=Cryptosporid...    33   9.3  
tr|Q5CX28|Q5CX28_CRYPV RRM domain containing protein; T22E16.120...    33   9.3  
tr|Q5CM26|Q5CM26_CRYHO Splicing factor OS=Cryptosporidium homini...    33   9.3  

>tr|A5B191|A5B191_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037878 PE=4 SV=1
          Length = 625

 Score = 38.1 bits (87), Expect = 0.29
 Identities = 33/85 (38%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
 Frame = -2

Query: 481 GSTSGSSFGG---MERPIDVDSLECPSSSATAERIVSAAAN-----RARQIEEDEMLAKF 326
           GST   S  G   ME  I++D  + P     A R   +  N     RARQIE DE+LA+ 
Sbjct: 487 GSTRSQSHHGQGVMEPVIEIDE-QSPEIRHVASRNGGSMNNDDSDARARQIEADEILARE 545

Query: 325 LQEDYGLEADEGNFALDDAHLARML 251
           LQE    E         DAH+A+ML
Sbjct: 546 LQEQLYHEMPVDGGVGIDAHIAQML 570


>tr|A9TPP1|A9TPP1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171239 PE=4 SV=1
          Length = 693

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = -2

Query: 373 ANRARQIEEDEMLAKFLQEDYGLEADEGNFALDDAHLARML 251
           A RARQ+ EDE +A+ LQE + LE   G+    D   ARML
Sbjct: 426 AERARQLSEDERVARELQEAFALEDMGGSQPPTDEMFARML 466


>tr|A1TN29|A1TN29_ACIAC Prophage tail length tape measure
           OS=Acidovorax avenae subsp. citrulli (strain AAC00-1)
           GN=Aave_1782 PE=4 SV=1
          Length = 1835

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -2

Query: 397 AERIVSAAANRARQIEEDEMLAKFLQEDYGLEADEGNFALDDAHLARMLSGRG 239
           A+R       +A++IE +  ++K +Q+D+   ADE N +L DA L    SG+G
Sbjct: 772 AKRRARDTIEQAKRIEGEAAVSKVIQQDWDRTADEINKSLTDALLRGFESGKG 824


>tr|B4GE13|B4GE13_DROPE GL21909 OS=Drosophila persimilis GN=GL21909
           PE=4 SV=1
          Length = 684

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
 Frame = -2

Query: 529 AGTSRHRYKPPRRVRDGSTSGSSFGGMERPIDVDSLECPSSSATAERIVSAAANRARQIE 350
           A + +H+++P   V DG+    +  G    I    L   S + +   + S   N+  QIE
Sbjct: 405 ANSLQHQHQPISAVSDGTDIADTSKGPFDNILYSHLTKESETPSVRSLSSNEHNQMDQIE 464

Query: 349 EDEMLAKFLQEDYGLEADEGNFALDDAHLARMLSGRGEC------KIHTTK--S*ASISS 194
            DE+    L  D  +E D      D +  A+ ++           + HT++  +  S + 
Sbjct: 465 GDEVTDPDL--DAEIEGDVPGKPEDLSASAKRITPSQSPIASLVPESHTSEPCTKTSTTP 522

Query: 193 SECVNNAGSLGGRCKE 146
           S+C++  GS+GG CK+
Sbjct: 523 SDCISRPGSVGGDCKK 538


>tr|Q1LVF9|Q1LVF9_DANRE Novel kinase domain containing protein
           (Fragment) OS=Danio rerio GN=mylk4 PE=4 SV=1
          Length = 640

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -2

Query: 445 RPIDVDSLECPSSSATAERIVSAAANRARQIEEDEMLAKFLQEDYGLEADE 293
           R  +   L  P+SS   ++I++A   R  + EE+E   K  +E+ GLEA E
Sbjct: 287 RLTEESQLAAPTSSGQNDKIITATPERVEEEEEEEKELKEEEEEAGLEAAE 337


>tr|Q4P860|Q4P860_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM03703.1 PE=4 SV=1
          Length = 669

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -3

Query: 273 MHTWRGCYQEEENARYTQQRVEPASQVANASIMQAR*EGDAKSPPNHQVPSS 118
           +HT+R C++++++    +Q + P +   NAS++Q    G  +SP  H   S+
Sbjct: 42  IHTFRSCFEDDQDDN--EQMLTPKASDLNASLLQHEVAGTIRSPSRHSRSST 91


>tr|A1TMM7|A1TMM7_ACIAC Prophage tail length tape measure
           OS=Acidovorax avenae subsp. citrulli (strain AAC00-1)
           GN=Aave_1628 PE=4 SV=1
          Length = 1906

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -2

Query: 397 AERIVSAAANRARQIEEDEMLAKFLQEDYGLEADEGNFALDDAHLARMLSGRG 239
           A+R       +A++IE +  ++K +Q+D+    DE N +L DA L    SG+G
Sbjct: 839 AKRRARDTIEQAKRIEGEAAVSKVIQDDWSRTTDEINRSLTDALLRGFESGKG 891


>tr|Q7YYC2|Q7YYC2_CRYPV Splicing factor, possible OS=Cryptosporidium
           parvum GN=1MB.324 PE=4 SV=1
          Length = 330

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = -2

Query: 526 GTSRHRYKPPRRVRDGSTSGSSFGGMERPIDVDSLECPSSSATAERIVSAAANRARQIEE 347
           G SR R +   R+R  S S S FG       V      S + ++        N  R+IE 
Sbjct: 239 GRSRSRSRSRDRIRSRSRSMSEFGSRNVSCSVSRNRSTSLNQSSCENPERGRNNHRKIET 298

Query: 346 DEMLAKFLQEDYGLEADEGNFALDDA 269
            +  + F Q+++  E +E N+   D+
Sbjct: 299 PQNESNFFQKEFMNEHNEKNYDRSDS 324


>tr|Q5CX28|Q5CX28_CRYPV RRM domain containing protein; T22E16.120
           Sc35-like splicing factor (Fragment) OS=Cryptosporidium
           parvum Iowa II GN=cgd6_2740 PE=4 SV=1
          Length = 344

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = -2

Query: 526 GTSRHRYKPPRRVRDGSTSGSSFGGMERPIDVDSLECPSSSATAERIVSAAANRARQIEE 347
           G SR R +   R+R  S S S FG       V      S + ++        N  R+IE 
Sbjct: 253 GRSRSRSRSRDRIRSRSRSMSEFGSRNVSCSVSRNRSTSLNQSSCENPERGRNNHRKIET 312

Query: 346 DEMLAKFLQEDYGLEADEGNFALDDA 269
            +  + F Q+++  E +E N+   D+
Sbjct: 313 PQNESNFFQKEFMNEHNEKNYDRSDS 338


>tr|Q5CM26|Q5CM26_CRYHO Splicing factor OS=Cryptosporidium hominis
           GN=Chro.60316 PE=4 SV=1
          Length = 330

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 23/86 (26%), Positives = 36/86 (41%)
 Frame = -2

Query: 526 GTSRHRYKPPRRVRDGSTSGSSFGGMERPIDVDSLECPSSSATAERIVSAAANRARQIEE 347
           G SR R +   R+R  S S S FG       V      S + ++        N  R+IE 
Sbjct: 239 GRSRSRSRSRDRIRSRSRSMSEFGSRNVSCSVSRNRSTSLNQSSYENPEKGRNNHRKIET 298

Query: 346 DEMLAKFLQEDYGLEADEGNFALDDA 269
            +    F Q+++  E +E N+   D+
Sbjct: 299 PQNEPNFFQKEFMNEHNEKNYDRSDS 324