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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914851
Clone id YMU001_000063_E12
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGTGCTGCGGCAGCAGCAGAACGTTTGTGGAGCCCAATAGGCTACACATCGAACAACCTT
GATGAAGTAGAAGGCAGACTGGAGCATTTCCGATGTCTGCTCAATCAGAGAAACATTCCA
GCAGCACCAGTGACAAATCCGCTGGCAAGAAGAGCCCCAACAGGCACTGGTTCTTGTTAC
TCTCAGTGAGTCATTCTAATTTGACAAATACCACTCAACAGCCAGCCGCACACACAAGCT
GTTTCATAATTTTTCGACAGATTTTGGTCTCTTTGTTTTAAAGCTTGTACATCATTGTAT
GCAGACATTTAAAACTTGTACATTAGCTCATGTACATGATCCCATAAGTTGATCAATGAT
GTCTGATGAGCATACTGGCACTAGAATCTGTGGACCCAAACATGCTTCTCTTAACTATAA
AAATTCAATCACGATAACCTCCTTTGAC
■■Homology search results ■■ -
sp_hit_id Q54K55
Definition sp|Q54K55|HEXB1_DICDI Beta-hexosaminidase subunit B1 OS=Dictyostelium discoideum
Align length 60
Score (bit) 49.7
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914851|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_E12.
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54K55|HEXB1_DICDI Beta-hexosaminidase subunit B1 OS=Dictyost...    50   6e-06
sp|Q54K56|HEXB2_DICDI Beta-hexosaminidase subunit B2 OS=Dictyost...    45   1e-04
sp|P29416|HEXA_MOUSE Beta-hexosaminidase subunit alpha OS=Mus mu...    41   0.002
sp|Q641X3|HEXA_RAT Beta-hexosaminidase subunit alpha OS=Rattus n...    41   0.003
sp|Q0V8R6|HEXA_BOVIN Beta-hexosaminidase subunit alpha OS=Bos ta...    40   0.006
sp|Q5RC84|HEXA_PONAB Beta-hexosaminidase subunit alpha OS=Pongo ...    37   0.050
sp|P06865|HEXA_HUMAN Beta-hexosaminidase subunit alpha OS=Homo s...    37   0.050
sp|Q22492|HEXA_CAEEL Beta-hexosaminidase A OS=Caenorhabditis ele...    36   0.086
sp|Q619W7|HEXA_CAEBR Beta-hexosaminidase A OS=Caenorhabditis bri...    35   0.15 
sp|Q6AXR4|HEXB_RAT Beta-hexosaminidase subunit beta OS=Rattus no...    34   0.33 
sp|P20060|HEXB_MOUSE Beta-hexosaminidase subunit beta OS=Mus mus...    33   0.43 
sp|P49614|HEXB_FELCA Beta-hexosaminidase subunit beta OS=Felis s...    33   0.56 
sp|P07686|HEXB_HUMAN Beta-hexosaminidase subunit beta OS=Homo sa...    32   0.95 
sp|P13723|HEXA1_DICDI Beta-hexosaminidase subunit A1 OS=Dictyost...    32   1.2  
sp|Q3ZZN2|AROD_DEHSC 3-dehydroquinate dehydratase OS=Dehalococco...    29   8.0  
sp|A5FRZ6|AROD_DEHSB 3-dehydroquinate dehydratase OS=Dehalococco...    29   8.0  

>sp|Q54K55|HEXB1_DICDI Beta-hexosaminidase subunit B1
           OS=Dictyostelium discoideum GN=hexb1 PE=3 SV=1
          Length = 560

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 28/60 (46%), Positives = 37/60 (61%)
 Frame = +1

Query: 4   AAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGSCYS 183
           ++A AERLWSPI YT  NL   + RL+ FRC L +R I +AP+ N     +P    SCY+
Sbjct: 506 SSAIAERLWSPIYYT--NLLNAKSRLQSFRCSLLKRGINSAPLNN----SSPLSAFSCYN 559


>sp|Q54K56|HEXB2_DICDI Beta-hexosaminidase subunit B2
           OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1
          Length = 564

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 28/61 (45%), Positives = 34/61 (55%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGSCY 180
           RA A AERLW  I   SN+    + RLE FRC L +R I AAP+ +     +P    SCY
Sbjct: 508 RAFATAERLWFSIE-NSNSTTFAKPRLERFRCFLLERGIGAAPLNS----TSPDDPNSCY 562

Query: 181 S 183
           S
Sbjct: 563 S 563


>sp|P29416|HEXA_MOUSE Beta-hexosaminidase subunit alpha OS=Mus
           musculus GN=Hexa PE=2 SV=1
          Length = 528

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVT 135
           RA A AERLWS     + N+D    RL HFRC L +R I A P++
Sbjct: 475 RAGAVAERLWS--SNLTTNIDFAFKRLSHFRCELVRRGIQAQPIS 517


>sp|Q641X3|HEXA_RAT Beta-hexosaminidase subunit alpha OS=Rattus
           norvegicus GN=Hexa PE=2 SV=1
          Length = 528

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVT 135
           RA A AERLWS     + N+D    RL HFRC L +R I A P++
Sbjct: 475 RAGAIAERLWS--SNLTTNMDFAFKRLSHFRCELLRRGIQAQPIS 517


>sp|Q0V8R6|HEXA_BOVIN Beta-hexosaminidase subunit alpha OS=Bos
           taurus GN=HEXA PE=2 SV=1
          Length = 529

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVT 135
           RA A AERLWS      +NLD    RL HFRC L +R + A P++
Sbjct: 476 RAGAVAERLWS--NKMVSNLDFAFKRLAHFRCELLRRGVQAQPLS 518


>sp|Q5RC84|HEXA_PONAB Beta-hexosaminidase subunit alpha OS=Pongo
           abelii GN=HEXA PE=3 SV=1
          Length = 529

 Score = 36.6 bits (83), Expect = 0.050
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPV 132
           RA A AERLWS     +++L     RL HFRC L +R + A P+
Sbjct: 476 RAGAVAERLWS--NKLTSDLTFAYERLSHFRCELLRRGVQAQPL 517


>sp|P06865|HEXA_HUMAN Beta-hexosaminidase subunit alpha OS=Homo
           sapiens GN=HEXA PE=1 SV=1
          Length = 529

 Score = 36.6 bits (83), Expect = 0.050
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPV 132
           RA A AERLWS     +++L     RL HFRC L +R + A P+
Sbjct: 476 RAGAVAERLWS--NKLTSDLTFAYERLSHFRCELLRRGVQAQPL 517


>sp|Q22492|HEXA_CAEEL Beta-hexosaminidase A OS=Caenorhabditis
           elegans GN=hex-1 PE=1 SV=1
          Length = 555

 Score = 35.8 bits (81), Expect = 0.086
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVTNP 141
           RA+AAAERLWSP   T    ++   R+   RC L  R     P  NP
Sbjct: 493 RASAAAERLWSPAEKT-QRAEDAWPRMHELRCRLVSRGYRIQPNNNP 538


>sp|Q619W7|HEXA_CAEBR Beta-hexosaminidase A OS=Caenorhabditis
           briggsae GN=hex-1 PE=3 SV=1
          Length = 557

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVTNP 141
           RA+AAAERLWSP   T    +    R+   RC L  R     P  NP
Sbjct: 495 RASAAAERLWSPAEKT-QKAENAWPRMHELRCRLVSRGYRIQPNNNP 540


>sp|Q6AXR4|HEXB_RAT Beta-hexosaminidase subunit beta OS=Rattus
           norvegicus GN=Hexb PE=2 SV=1
          Length = 537

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPV 132
           RA+A  ERLWSP   T  NL+    RL   RC +  R I A P+
Sbjct: 483 RASAVGERLWSPRIIT--NLENAYRRLAVHRCRMVSRGIAAQPL 524
tr_hit_id B8LLF7
Definition tr|B8LLF7|B8LLF7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 62
Score (bit) 80.1
E-value 5.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914851|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_E12.
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LLF7|B8LLF7_PICSI Putative uncharacterized protein OS=Picea...    80   5e-14
tr|A7QXR9|A7QXR9_VITVI Chromosome undetermined scaffold_229, who...    70   7e-11
tr|Q65XA2|Q65XA2_ORYSJ Os05g0115900 protein OS=Oryza sativa subs...    69   1e-10
tr|B8AXA8|B8AXA8_ORYSI Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|A9UXK6|A9UXK6_MONBE Predicted protein OS=Monosiga brevicollis...    69   2e-10
tr|B6ST04|B6ST04_MAIZE Beta-hexosaminidase beta chain OS=Zea may...    68   3e-10
tr|Q9M3C5|Q9M3C5_ARATH Beta-N-acetylhexosaminidase-like protein ...    67   3e-10
tr|Q8LFK0|Q8LFK0_ARATH Beta-N-acetylhexosaminidase-like protein ...    67   3e-10
tr|Q0WUA8|Q0WUA8_ARATH Beta-N-acetylhexosaminidase-like protein ...    67   3e-10
tr|A9SED9|A9SED9_PHYPA Predicted protein (Fragment) OS=Physcomit...    67   3e-10
tr|A7WM73|A7WM73_ARATH Beta-N-acetylhexosaminidase OS=Arabidopsi...    67   3e-10
tr|A7Q448|A7Q448_VITVI Chromosome chr13 scaffold_48, whole genom...    64   5e-09
tr|Q8L7S6|Q8L7S6_ARATH At1g65600/F5I14_13 OS=Arabidopsis thalian...    63   6e-09
tr|O04477|O04477_ARATH F5I14.13 protein OS=Arabidopsis thaliana ...    63   6e-09
tr|Q5JLX3|Q5JLX3_ORYSJ Putative beta-N-acetylhexosaminidase (Os0...    59   1e-07
tr|Q6AT83|Q6AT83_ORYSJ Putative beta-N-acetylhexosaminidase OS=O...    55   2e-06
tr|Q5WMR0|Q5WMR0_ORYSJ Os05g0415700 protein OS=Oryza sativa subs...    55   2e-06
tr|B8AYA3|B8AYA3_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|Q2L3V7|Q2L3V7_WHEAT Putative beta-N-acetylhexosaminidase (Fra...    47   6e-04
tr|Q7Q0Z2|Q7Q0Z2_ANOGA AGAP010056-PA OS=Anopheles gambiae GN=AGA...    46   0.001
tr|A9TBY7|A9TBY7_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q9GT47|Q9GT47_ANOGA Beta-hexosaminidase, beta chain (Fragment...    45   0.002
tr|Q91XG3|Q91XG3_MOUSE Hexosaminidase A OS=Mus musculus GN=Hexa ...    41   0.026
tr|Q8BNS6|Q8BNS6_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.026
tr|Q3U936|Q3U936_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.026
tr|Q3TXV7|Q3TXV7_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.026
tr|Q3TW10|Q3TW10_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.026
tr|Q3TVI2|Q3TVI2_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.026
tr|Q3TKF6|Q3TKF6_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.026
tr|Q3THQ0|Q3THQ0_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.026

>tr|B8LLF7|B8LLF7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 554

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 41/62 (66%), Positives = 43/62 (69%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGSCY 180
           RAAAAAERLWS    TSN L     RL +FRC+LNQR I AAPVTN LAR  P G GSCY
Sbjct: 493 RAAAAAERLWSTEDDTSNGLSTALPRLRNFRCVLNQRGIAAAPVTNELAREPPIGAGSCY 552

Query: 181 SQ 186
            Q
Sbjct: 553 MQ 554


>tr|A7QXR9|A7QXR9_VITVI Chromosome undetermined scaffold_229, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009334001 PE=4 SV=1
          Length = 204

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 36/62 (58%), Positives = 41/62 (66%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGSCY 180
           RAAAAAERLWS     + +  +V GRL HFRCLLNQR + AAP+  P  R AP   GSCY
Sbjct: 144 RAAAAAERLWSAYDNLAKDPSQVFGRLAHFRCLLNQRGVAAAPLVGP-GRVAPEEPGSCY 202

Query: 181 SQ 186
            Q
Sbjct: 203 KQ 204


>tr|Q65XA2|Q65XA2_ORYSJ Os05g0115900 protein OS=Oryza sativa subsp.
           japonica GN=OJ1654_B10.16 PE=2 SV=1
          Length = 541

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1   RAAAAAERLWSPI-GYTSNNLDE-VEGRLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGS 174
           RAAAAAER+WS +   ++ +L+  V  RL +FRCLLN R I AAPVTN  ARR P G GS
Sbjct: 478 RAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLLNHRGIAAAPVTNSYARRPPIGPGS 537

Query: 175 CYSQ 186
           C+ Q
Sbjct: 538 CFIQ 541


>tr|B8AXA8|B8AXA8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18203 PE=4 SV=1
          Length = 541

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1   RAAAAAERLWSPI-GYTSNNLDE-VEGRLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGS 174
           RAAAAAER+WS +   ++ +L+  V  RL +FRCLLN R I AAPVTN  ARR P G GS
Sbjct: 478 RAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLLNHRGIAAAPVTNSYARRPPIGPGS 537

Query: 175 CYSQ 186
           C+ Q
Sbjct: 538 CFIQ 541


>tr|A9UXK6|A9UXK6_MONBE Predicted protein OS=Monosiga brevicollis
           GN=18960 PE=4 SV=1
          Length = 401

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 37/62 (59%), Positives = 40/62 (64%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGSCY 180
           R AA AERLWSP   T  N D+   RL  +RCLLN R I AAP TN  AR AP+G GSCY
Sbjct: 342 RMAAVAERLWSPRELT--NADDASTRLVAYRCLLNHRAIAAAPSTNSGARTAPSGPGSCY 399

Query: 181 SQ 186
            Q
Sbjct: 400 DQ 401


>tr|B6ST04|B6ST04_MAIZE Beta-hexosaminidase beta chain OS=Zea mays
           PE=2 SV=1
          Length = 545

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 38/64 (59%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDE--VEGRLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGS 174
           RAAAAAERLWS +   S    E  V  RL  FRCLLN R + AAPVTN  ARR P G GS
Sbjct: 482 RAAAAAERLWSQLEAISAQDVETTVLSRLHRFRCLLNHRGVAAAPVTNYYARRPPVGPGS 541

Query: 175 CYSQ 186
           C+ Q
Sbjct: 542 CFVQ 545


>tr|Q9M3C5|Q9M3C5_ARATH Beta-N-acetylhexosaminidase-like protein
           OS=Arabidopsis thaliana GN=T26I12.140 PE=4 SV=1
          Length = 557

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 36/64 (56%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEG--RLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGS 174
           RAAAAAER+WS     S     +    RL +FRCLLN R +PAAPV N  ARR P G GS
Sbjct: 494 RAAAAAERMWSTREAVSKGNITLTALPRLHYFRCLLNNRGVPAAPVDNFYARRPPLGPGS 553

Query: 175 CYSQ 186
           CY+Q
Sbjct: 554 CYAQ 557


>tr|Q8LFK0|Q8LFK0_ARATH Beta-N-acetylhexosaminidase-like protein
           OS=Arabidopsis thaliana GN=At3g55260 PE=2 SV=1
          Length = 445

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 36/64 (56%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEG--RLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGS 174
           RAAAAAER+WS     S     +    RL +FRCLLN R +PAAPV N  ARR P G GS
Sbjct: 382 RAAAAAERMWSTREAVSKGNITLTALPRLHYFRCLLNNRGVPAAPVDNFYARRPPLGPGS 441

Query: 175 CYSQ 186
           CY+Q
Sbjct: 442 CYAQ 445


>tr|Q0WUA8|Q0WUA8_ARATH Beta-N-acetylhexosaminidase-like protein
           OS=Arabidopsis thaliana GN=At3g55260 PE=2 SV=1
          Length = 541

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 36/64 (56%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEG--RLEHFRCLLNQRNIPAAPVTNPLARRAPTGTGS 174
           RAAAAAER+WS     S     +    RL +FRCLLN R +PAAPV N  ARR P G GS
Sbjct: 478 RAAAAAERMWSTREAVSKGNITLTALPRLHYFRCLLNNRGVPAAPVDNFYARRPPLGPGS 537

Query: 175 CYSQ 186
           CY+Q
Sbjct: 538 CYAQ 541


>tr|A9SED9|A9SED9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128384 PE=4 SV=1
          Length = 426

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
 Frame = +1

Query: 1   RAAAAAERLWSPIGYTSNNLDEVEGRLEHFRCLLNQRNIPAAPV----TNPLARRAPTGT 168
           RAAAAAERLWS + YT     +   R +HFRCLLN+R IPAAP+         R +P G 
Sbjct: 361 RAAAAAERLWSTLEYTKVGHTQAVSRFQHFRCLLNRREIPAAPIFYGSRFAYGRSSPYGP 420

Query: 169 GSCYSQ 186
           GSC+ Q
Sbjct: 421 GSCFKQ 426