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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914854
Clone id YMU001_000063_F03
Library
Length 282
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TATAACAAAGGACAATAAATATATGCTCTGCTAGCCTCTGGGCTTCGCTGACAAACCAGT
CTCAATTTTCTTCACTTCAAAAATAAGCATTCTCCACAACTTCATCACAAACATCTCTGC
TTCATCATCAAGAATGGTTGTTAAAAGAGCAAGCATTTCGGCAGCACCAGTATGTTTCCT
CGTATTTGAGACAATGAACTCAACAAGCATCTCTTCTTCCTCACCAAGAAACTCCAAAAT
CTTTTTCTGAATCCAGGCTTTCATCCTGTCGTGCAATTGATG
■■Homology search results ■■ -
sp_hit_id P49756
Definition sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 OS=Homo sapiens
Align length 72
Score (bit) 53.5
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914854|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_F03.
         (282 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 OS=Homo sa...    54   3e-07
sp|Q8WZK0|YHRA_SCHPO Uncharacterized RNA-binding protein C839.10...    37   0.023
sp|P14267|FIB1_ADE41 Fiber protein 1 OS=Human adenovirus F serot...    30   4.9  

>sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 OS=Homo
           sapiens GN=RBM25 PE=1 SV=2
          Length = 784

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = -1

Query: 267 RMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVMKLWRM 88
           R++ WI KKI            +F+ S    H+    +L  +  +LD+EAE+F++K+WR+
Sbjct: 711 RIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRL 770

Query: 87  LIFEVKKIETGL 52
           LI+E +  + GL
Sbjct: 771 LIYETEAKKIGL 782


>sp|Q8WZK0|YHRA_SCHPO Uncharacterized RNA-binding protein C839.10
           OS=Schizosaccharomyces pombe GN=SPBC839.10 PE=2 SV=1
          Length = 695

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = -1

Query: 276 LHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVMKL 97
           L + M+A++ KKI             F + + R+H GA ++++ L   L ++A  FV K+
Sbjct: 622 LKEEMQAFVTKKIIEYIGIQEDSLITFTIDHIRQHKGAEQLVSELDLALAEDAPEFVSKV 681

Query: 96  WRML 85
           +R L
Sbjct: 682 YRYL 685


>sp|P14267|FIB1_ADE41 Fiber protein 1 OS=Human adenovirus F serotype
           41 PE=4 SV=1
          Length = 562

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 35  PLGFADKPVSIFFTSKISILHNFIT-----NISASSSRMVVKRAS 154
           PLG  DK + + F+S + + +NF+T      ++ SSSR V  + S
Sbjct: 163 PLGLVDKTLKVLFSSPLYLDNNFLTLAIERPLALSSSRAVTLKYS 207
tr_hit_id A9TUK5
Definition tr|A9TUK5|A9TUK5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 78
Score (bit) 98.2
E-value 2.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914854|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_F03.
         (282 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TUK5|A9TUK5_PHYPA Predicted protein (Fragment) OS=Physcomit...    98   2e-19
tr|A7Q2D0|A7Q2D0_VITVI Chromosome chr1 scaffold_46, whole genome...    98   2e-19
tr|Q8VY15|Q8VY15_ARATH Putative uncharacterized protein At1g6021...    95   2e-18
tr|O80743|O80743_ARATH T13D8.9 protein OS=Arabidopsis thaliana G...    95   2e-18
tr|A9PG93|A9PG93_POPTR Putative uncharacterized protein OS=Popul...    95   2e-18
tr|Q6ZA70|Q6ZA70_ORYSJ Putative RNA-binding region RNP-1 and Spl...    92   1e-17
tr|B8BAT0|B8BAT0_ORYSI Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|Q8L647|Q8L647_DESAN Putative uncharacterized protein (Fragmen...    91   4e-17
tr|A9SI15|A9SI15_PHYPA Predicted protein OS=Physcomitrella paten...    87   3e-16
tr|A3BT53|A3BT53_ORYSJ Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A8QEJ3|A8QEJ3_BRUMA PWI domain containing protein OS=Brugia m...    60   5e-08
tr|Q5DBM1|Q5DBM1_SCHJA SJCHGC09527 protein OS=Schistosoma japoni...    59   2e-07
tr|B3SAD4|B3SAD4_TRIAD Putative uncharacterized protein OS=Trich...    59   2e-07
tr|A9V1V4|A9V1V4_MONBE Predicted protein OS=Monosiga brevicollis...    56   1e-06
tr|B7PYM9|B7PYM9_IXOSC Ensconsin, putative OS=Ixodes scapularis ...    54   4e-06
tr|Q6NVT1|Q6NVT1_XENTR RNA binding motif protein 25 OS=Xenopus t...    54   5e-06
tr|Q4S740|Q4S740_TETNG Chromosome 14 SCAF14723, whole genome sho...    54   5e-06
tr|Q9CT49|Q9CT49_MOUSE Putative uncharacterized protein OS=Mus m...    54   5e-06
tr|Q8BVT8|Q8BVT8_MOUSE Putative uncharacterized protein (Fragmen...    54   5e-06
tr|Q8BU35|Q8BU35_MOUSE Putative uncharacterized protein OS=Mus m...    54   5e-06
tr|Q6NWW2|Q6NWW2_MOUSE Rbm25 protein OS=Mus musculus GN=Rbm25 PE...    54   5e-06
tr|Q3UQU7|Q3UQU7_MOUSE Putative uncharacterized protein OS=Mus m...    54   5e-06
tr|B2RY56|B2RY56_MOUSE Rbm25 protein OS=Mus musculus GN=Rbm25 PE...    54   5e-06
tr|B3KT03|B3KT03_HUMAN cDNA FLJ37378 fis, clone BRAMY2025230, hi...    54   5e-06
tr|B2RNA8|B2RNA8_HUMAN RBM25 protein OS=Homo sapiens GN=RBM25 PE...    54   5e-06
tr|A0PJL9|A0PJL9_HUMAN RBM25 protein (Fragment) OS=Homo sapiens ...    54   5e-06
tr|B6N3N9|B6N3N9_BRAFL Putative uncharacterized protein OS=Branc...    53   7e-06
tr|B6L3W2|B6L3W2_BRAFL Putative uncharacterized protein (Fragmen...    53   7e-06
tr|Q4T2V2|Q4T2V2_TETNG Chromosome 10 SCAF10171, whole genome sho...    52   1e-05
tr|A8DZA0|A8DZA0_DANRE Novel protein similar to human RNA bindin...    52   1e-05

>tr|A9TUK5|A9TUK5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_36811 PE=4 SV=1
          Length = 182

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 47/78 (60%), Positives = 57/78 (73%)
 Frame = -1

Query: 282 HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
           H LH+RM+ WI KKI            +FIVS+TRKH  AA ML LL  ILDDEAEMFV+
Sbjct: 105 HDLHERMRPWISKKITEFLGEEENTLVDFIVSSTRKHVSAATMLELLEAILDDEAEMFVL 164

Query: 102 KLWRMLIFEVKKIETGLS 49
           K+WRMLIFEV+++ETGL+
Sbjct: 165 KMWRMLIFEVRRVETGLA 182


>tr|A7Q2D0|A7Q2D0_VITVI Chromosome chr1 scaffold_46, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028834001
           PE=4 SV=1
          Length = 744

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 45/82 (54%), Positives = 62/82 (75%)
 Frame = -1

Query: 282 HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
           H+LH+RM+ WI KKI            ++IVS+T++H  A++ML LL +ILDDEAEMFV+
Sbjct: 662 HELHERMRPWISKKITEFLGEEEATLVDYIVSSTQEHVKASQMLELLQSILDDEAEMFVL 721

Query: 102 KLWRMLIFEVKKIETGLSAKPR 37
           K+WRMLIFE+KK+ETGLS + +
Sbjct: 722 KMWRMLIFEIKKVETGLSLRSK 743


>tr|Q8VY15|Q8VY15_ARATH Putative uncharacterized protein At1g60210
            OS=Arabidopsis thaliana GN=At1g60200 PE=2 SV=1
          Length = 899

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 43/82 (52%), Positives = 60/82 (73%)
 Frame = -1

Query: 282  HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
            HQ+H+RM+ WI KKI            +FIVSNT++H  A++ML LL +ILD+EAEMFV+
Sbjct: 817  HQVHERMRPWISKKIMEFLGEEEATLVDFIVSNTQQHVQASQMLELLQSILDEEAEMFVL 876

Query: 102  KLWRMLIFEVKKIETGLSAKPR 37
            K+WRMLIFE+K++E G+  K +
Sbjct: 877  KMWRMLIFEIKRVEAGVPVKSK 898


>tr|O80743|O80743_ARATH T13D8.9 protein OS=Arabidopsis thaliana
           GN=T13D8.9 PE=4 SV=1
          Length = 781

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 43/82 (52%), Positives = 60/82 (73%)
 Frame = -1

Query: 282 HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
           HQ+H+RM+ WI KKI            +FIVSNT++H  A++ML LL +ILD+EAEMFV+
Sbjct: 699 HQVHERMRPWISKKIMEFLGEEEATLVDFIVSNTQQHVQASQMLELLQSILDEEAEMFVL 758

Query: 102 KLWRMLIFEVKKIETGLSAKPR 37
           K+WRMLIFE+K++E G+  K +
Sbjct: 759 KMWRMLIFEIKRVEAGVPVKSK 780


>tr|A9PG93|A9PG93_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 358

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 43/82 (52%), Positives = 60/82 (73%)
 Frame = -1

Query: 282 HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
           H+LH+RM+ WI KKI            ++IVS+T+ H  A++ML +L  ILDDEAE+FV+
Sbjct: 276 HELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEMLQAILDDEAEIFVL 335

Query: 102 KLWRMLIFEVKKIETGLSAKPR 37
           K+WRMLIFE+KK+ETGLS + +
Sbjct: 336 KMWRMLIFEIKKVETGLSLRSK 357


>tr|Q6ZA70|Q6ZA70_ORYSJ Putative RNA-binding region RNP-1 and Splicing
            factor PWI family member protein OS=Oryza sativa subsp.
            japonica GN=P0433E10.19 PE=4 SV=1
          Length = 919

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 44/82 (53%), Positives = 59/82 (71%)
 Frame = -1

Query: 282  HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
            H+LH+RM+ WI KKI            ++IVS T+ H  A++ML LL +ILD EAEMFV+
Sbjct: 837  HELHERMRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLELLQSILDVEAEMFVL 896

Query: 102  KLWRMLIFEVKKIETGLSAKPR 37
            K+WRMLIFE+KK+ETGLS + +
Sbjct: 897  KMWRMLIFEIKKVETGLSGRAK 918


>tr|B8BAT0|B8BAT0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_29243 PE=4 SV=1
          Length = 1138

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 44/82 (53%), Positives = 59/82 (71%)
 Frame = -1

Query: 282  HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
            H+LH+RM+ WI KKI            ++IVS T+ H  A++ML LL +ILD EAEMFV+
Sbjct: 1056 HELHERMRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLELLQSILDVEAEMFVL 1115

Query: 102  KLWRMLIFEVKKIETGLSAKPR 37
            K+WRMLIFE+KK+ETGLS + +
Sbjct: 1116 KMWRMLIFEIKKVETGLSGRAK 1137


>tr|Q8L647|Q8L647_DESAN Putative uncharacterized protein (Fragment)
           OS=Deschampsia antarctica PE=2 SV=1
          Length = 192

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 44/80 (55%), Positives = 57/80 (71%)
 Frame = -1

Query: 282 HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
           H+LH+RM+ WI KKI            E+IVS T+ H  A++ML LL +ILD EAEMFV+
Sbjct: 110 HELHERMRPWISKKIIEFLGEEESTLVEYIVSCTKDHVHASKMLELLQSILDVEAEMFVL 169

Query: 102 KLWRMLIFEVKKIETGLSAK 43
           K+WRMLIFE+KK+E GLS +
Sbjct: 170 KMWRMLIFEIKKVEAGLSGR 189


>tr|A9SI15|A9SI15_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_212644 PE=4 SV=1
          Length = 78

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 43/71 (60%), Positives = 51/71 (71%)
 Frame = -1

Query: 264 MKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVMKLWRML 85
           M+ WI KKI            +FIVS+TRKH  AA ML LL  ILDDEAEMFV+K+WRML
Sbjct: 1   MRPWISKKITEFLGEEETTLVDFIVSSTRKHVSAATMLELLEAILDDEAEMFVLKMWRML 60

Query: 84  IFEVKKIETGL 52
           IFEV+++ETGL
Sbjct: 61  IFEVRRVETGL 71


>tr|A3BT53|A3BT53_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_026225 PE=4 SV=1
          Length = 1089

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/72 (54%), Positives = 51/72 (70%)
 Frame = -1

Query: 282  HQLHDRMKAWIQKKIXXXXXXXXXXXXEFIVSNTRKHTGAAEMLALLTTILDDEAEMFVM 103
            H+LH+RM+ WI KKI            ++IVS T+ H  A++ML LL +ILD EAEMFV+
Sbjct: 837  HELHERMRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLELLQSILDVEAEMFVL 896

Query: 102  KLWRMLIFEVKK 67
            K+WRMLIFE+KK
Sbjct: 897  KMWRMLIFEIKK 908